Lsi02G000110 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G000110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Location	chr02 : 140230 .. 148151 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATCGTTATGCAGTGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCTTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTTCTCCTCCCTATCATTTCTCCCCCGAAAACGACCCGAAGACTGGTGGGTACTATTTTATCGTCTTCAGCATTCTTAGTAACTTTCATTTCTTAAATTTGTTGGATTCTCCTCAATTATAATTTAACCTTAAAACGTGCATAGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGGTTAATTTGCCTACTTCTTCAATTTATGCTTGTGAGAATTAATTTTTTTCTATGCTCACTTTGGCTCTTGTGAAAGTGTGTGTATGAGTGTGTGTGTATATATATATTTATGAGATGGGATAATGGAACCTCGACCCCTTTATGCCCGTTTATCTATGCTCATTTTAGCGCTCTTGTGAAAGTTAATGACACTGCACTATACAGTAGTAGAATCCTTATGACGATATTACAGGGATTTACTTTCAAGCATTTATTTTGAATGGCTATATATGCTTAGTGTTAAATTACTCTTATAGTTATATCCAACGTCTTAAACCGATGCATTGTTGTTGGTTGCATTGGTAAGATTTTAGCTTCGTGCATTAATAATACTATGGTAACATACTGTCCAAAAAAAGAAAAAAACCATTGGTAGTAAAACACTGCTGGAGGAAGTTTTTTATAAGTATTAATTTCCTCTTATATCCAAAGTCTGAAACTTATGCATTACGACATTGCAAGGATTTGAATTTCTCATGCATTAGTAATAGCATGGTAATTTTTTTTTCCTAATTATTAATTAGAAGTCATGAATGATGAATCACAAAAGACTTCCTGTGAGGAAATTTTACTTGTAGAGAGGAAATGGCCAGTTTAAAATCAAAGGGGTAAACATTAGGTAGGAGCGAGTGGGGGCAATTAACCTGGCGAGAAATGTCAACAAATTTTCATATTTTATTCAAATCAGACTTTCTCTTTCATTTGTGACATTGGTTTTTATATTGTATTAGCAATCATATATGGTATGTACTATGTAGGGACAGGAGAGTTGGATTTGAAACTTTGGCATAAGGAATGGAATAGGGGTCTCCTCAACTGTTAAGTTATGCTCATGTTAGCGAAAAACGTACATAGTAGGCCAAATTTTCTCAACTGTAATTAGATGTGGTTTGCAATAGATGCCTCCTCAACTGGTAAGTTATGCTCATGTTGGCAACCATCACCATTAGATGTTGTAAGTGGTGTAATACCAATCTCTAATTTGAATGAATATGAATCTCTACCCTAAATGAGGGGATATGGGCTTTATTTGTAGGGAAAATGTGATTACAAGTTTGTAAAGAATGCTAACAAATCAAAATAACAAACAAACTTATTATCAACTAACTATCTAACTAACTAACTATCCCAACCAACTCTCAACTAGTTACAACAATAAAGCCTCACACTACACCATTAAGGTTTCTCCATTCTTTTGGCAAAGGATATACCAATTAGGCGAAGTGGAAATCCACATAGCTCTCCTCTGTAAGGCATCAATTGTGTTTATGCAGCCATGGCTGATTTCCCAAATGAAGAATTTTATCTCTTTTTTGGATAAGACATCTTTAGTAATGGTTTGTATAAGGAGCTGTGACCTGTGAGATAAGGGGTCACGGGATGGGAGGTTGCAGCCTAAGTATTTGGATGAGAAGGTGCCTTATGTGTCTATCTTCCACCTCCAATAGTCTTCATGATCTGCCACTAGGAAAGGATATGCTTGGCCATTCAACAAACTCCTCTTCATTTAAGTTTCTCCTCAAAACACAAGATCCAACAGGCATCAGTACGGTTCCCATGGTTAGATTGAGAATTCCTTTCCTTTGTAGACTAATGGTTGATTGAGAATTCCTTCCCTCTGCCCGATTAGTGGTTGGCCTAGTCATGGATTTAACCAAAAACATAAAGGGCTGAAACTTGTCTTAAAGTAATGGAGTCAGTCCATCTTTGGTAACAATATGTCACAGAGAACAACCCTCCTCACAGAATTGGATTATATTGACAATGAAGGAGATGTTAATATCGTCACAGAGGCTCTCAATAATAGAAGAACTGATATGAAAACCCTAGTGAATTGGAATTAGAAACCTTTTGGGATGCAAACCTCTAATTCTCAATCACTAAAACCGCCAAATCAACTCGATCTCAACCCTAAAGATTGGGTTAGACACGGATTGCCTTAAGATCAAATATCTTGAGACAAAGAACAAATTCTTAACCTAAGATTGGAACACTCCACAAGATAGGATGATAAATCCCACTTGAATGTTCTTGGCATGCAACTCAACACATGAATTGCAAAATTCAAGAAGCTCTCCTGGCTAATCTTGAAAGAAGCACAAAGGCCAAATTTGATTCATCGTAAAAACTTCTCAAAACAACCTAAAGGCAAGGCTTTAATAGCCTTCCAAAGAAAACCCTAATGACACATCATAATTCATAGTAAAATGTCTAAAATAACCTTACTTAAAATGTCATAAGAAGGATAAATTTGGAAAGTAATAAAATTACATCAAAATTATTAAATAAAATATAAACAATAATATGATGCCTTGGATGGTTCATATCAAGAACAAAGATTAAAGAAATGCTTTTATCCATTGTTTCTGATGAAAAGATTAGATGGTGTCAGAAATACAAAGCCAAATGTAGGGGTGATCATCGGTCGGTTGTAGTCGGTCTCGACTTGTTTTTGGGAGGTTGGTGACGCTGGCCGATTGTCCATGCAATCAATTGGTCGATTTTGGTCAGTTTTATGTCTTCAACGAACTAAAAAAGAAAAGGAATAAACAAGAAGATAAAGTAATGGAGAAGAAAGGAGAAAAGGAAAAAAATAATAATAAGAAAGGAAAAAGAAACTGAGAAGAAAGAACTCAAAGAAAGCAAAAAATATATATATATAGCAGCAGCCAATGGCGGTGATGGCCGGTAGAGGTGACGGTAGCTGGTGGAGGAGGGGAGAGAAGAGAGAGAAGGGAAAGGAGTGGGAGAACCATATGAGAGGTGAGAATGAGGACTAAGGAGAGAGAGAAATTAGAAAAAGAAGATTTTTGGAAATACAGGTGGAGGGAGGGATGAAGATATTTTTTTAATATTTAAAACAAGGAGTGGTTTTTTAAAAACCATGTGAGCTCACATTTTTTTGACAAGTCAAATGGTCATTAGTTGTGCTGAAGAGTGAAAATTGAAGGACACCCTTTTTTCTAAATAATAATAAGCTATTAAATTTGGTTGGTCGGTCAGTAGGTTTTCTCCTCCTTTATTTTTACTCCGACTGACTGACTTTGGTTTGGTCGGTTTTGCTCGGTTGGATCGGTTTTTGACTCACCCTTAGCTAGTAGATAGCTCTTGGAAGGGGATGAGAATACCACTCTTTTCCACAGATATGTGGCTGCTTGGAAACGTAAAAGTGCCGCAACTCAAATCCTTAACTCACATAATGAAAGTTTGCTCTTAGATAGTGAGATCGAGGTTGCCTTTTTGGATTTCTGCAAGCATCTCTTCACCAAAAAATGGGGCAGAAGACTTCTCCCTCAAAATCTTGATTGGGATCTCATCAATCTTGAACAAGCAACCAGCTTAGAAGCTCCTTTCCAGAAGATGAAATTTGGATGGCAGTAAAGGCTCTAGGCAGCAACAAGACCCCGGACCAGATGGTTTCACAACATAATTCTTTAAAAAGTCTTGGAACATTTTCAAGCTCGACCTAATTAAAGTGTTTCATAAAGATTTTCAAAAATGAATTGTCAACTGAAATGTGAATGAAACGTATATTTGCCTTATTCCAAAGACATTGGATGCTAGAAAACTTGAAGACTATAGACCCATTAGTCTCACCACTTGCCTCTACAAGATCATTGCCCGTGGACTTTCCGATTGTCTCAAAAACGCCCTTCAACTATCATGGATTATTAATTGGCCTTTGTGGAGGTTAGACAAATTTTGGATGCTTTGATCATTGCCAGTGAGATCTTAGAACAGTGGTATATGAAGAAAACTCAAGGTGTTGTCATCAAGCTTGTTGTGGAAAAAACTTTTTATAAAGTGGATTGGGAATACCTTGATGACATTTTGAAACCGAAAGGATTTGGTATCAAATGGAGACTCTAGATCAAAGGTTGCATCTCATCAACCAATTTCTCCATCATCATCAATGAAAAATCGAGAGGTAAATTCAAAGCTACTAGAGGCCTTTGGCAAGGAGATCCATTGTCCCCCTTTCTATTTATTATTGTGATGGACTCCATAAGTCGTATCCTCACAAAGGCAGCTGGAATTGGCTCCATCAAAGGCTTCTCTCTCTTTAAAGACATGCCTCAAATCAACCATCTCCTATTTGCCAATGATACCTCACCAACAAAGAAGATGATACCGACATCCTTTTTAACCTCATTGATTATTTATTTATTTATTTTTATTATTTTTTTTAAAGAAGGCATCGGGTCTCAAAAATTTGAATTTTTGGGCATTAGTTGTGAAGATGATTGGGTGGATTTTATAGCCAGCAAGCATGATTAAAAAGTGGGTTTGGTCGGCTGAATATTTGGGCCTTCCATTATATGGTAAACCATCATTATTAACCTTTTGGCAGCCTATTATTGAGAAAATTGATAAAAGACTTCACTCATGGCATCACAGCAACCTATCCAAGGGAGGTAGACTAACTTTGTTAAATGCTACATTATCCAACCTCCCCATCTACTATCTCTGTTTCAAGCCCCATCTGCTGTGATTGAACAAATTGAAAGGAGTTCCAGGAATTTTCTTTGGGATGGAAACCGGGTCAGAAAAACACCTCACCTCTTTCATTGGGACAGACTCAAGCTCCCTTTGGAAGGAGGGCTCGGCATTGTGGACATTAGATTTCGAAACAAAGGTTTGTTAGCCTAGATAGGAAAAAAATGCCTTATGGAGAAAATTAATGAAGGTTAAGTTTGGCTCTAGACACTTTGATAAAAAACCAGCTTTGAAGCTCCATGTATCTTAACGAAGTCCCTAGCTCCACACTAGCAAACAGATGGACATGATTCATGGAAATATTCGATGCTCTGTTGGAAATGGACAATCCACATCCTTTTGGCTTGGCCAATGGAAGGGGACCGAAGCTCTCCACAAGGATTTTCCCAAGTTATTTTGCTGAGTCTAAAAAAGCCTCCATTGCTGATGTTTGGAGTATTGATTACTCTTCTTGGATGTTGAACTTTAGAAGGAACTTGGACGATGAAATTGCCGAATGGGCCTCCTTTTCTCAATTCATCCGCACTCACAATCTCACACAGAGGGATGACATATGGATTATGAAATTGGATATAACAGTGGTCAGTGGCCTTTTTTCTGTCAAGTCCTTAATTTCACACCTTGCCTCGGATACAATTTCATCCACTAAGGACCTCGACAAACAATTGTAGAAATTTCCTTGTCCAAAGAGAGTCAAGTTTCTTCTTTAGGAAATAGTCCACTCCTGCCTTAACACATTTGATAGGCTGCAAAAATGGATAATGAATCCCAAAATCACATCTTCTTCCATTGTTTATTTGCTGCTGGAATCTGGGCTGATTTATTTGATGCTTTTGGTTGGCAAATTGTTGCTCCTTTGGACACTAGTGCCTGGTTCAGAGTGTTGTTCATTGATCACCCTTTTACGGCAACAAAAGGGCATCTATGAGCCAGTATAATCAGAGCCATCCTTTGGAAGATATGGGAAGAGAGAAAGTCCAGGATTTTTTAAGGAAAAGAAAGATCCCCTTGGGATGTTTATGAATCATCTATTTTTAATGCTCTTTTTTGATGTAAAAATATACAATCCCTCAATAGTTACAACTTAAATTTCCTTGTTTCTTACAAATAAAAGAAAGAACTCTCCATGTTATATTTCACAATACATTGTAAATTTAGTAATTTATTTGTATTTGAAACTAGAATGGCTAGCATTACTTTTGACGACATTGTACTATTGTTTCAATTTTATGATGGTTTATAGAAAACTTTATATATTTTCCGTTGTTGATTTATGACTATGTTGTAGTTGTCGATTTCTGAACTAATTAATGAGATGTGTGCGATTAGGCACACTTGATGGTGGAGTTGGAGTGTGAAACAAATTCTTTGGGAGTGTATTTTCTTTTCAGGTGTGGTTTATCTGATTTTTAAGAGTAACTCTGCCAAGTTCTATTTTATTTTATTATTTTATGGATTTTGTTTCAAGAAAGCTTTTGCTTACTACCTATTGTTTTCAAAAGAGTTTAGCTTTTATAAGTTTGACAATAGATTCCATAGGTTGAGATCTTTAGTTGACATAACACGTCCTTGGTTTGGTTGAGGTAACTTGAGGTGGAGTGACATTTGCTTTAAAAAAATACCCATACCGAGGCCTTCTTTATATGTGAGGAGTGACGTAGCCTTCTAATTTACAAGAATGTTGTCATTCTATCACTCCCTTCAGAGGCTCCTCTCCAAAAGAAACCCCTCATGGACCTCTCGAAACTCTGTATAACCTTTCAAGACGCTTGAAATTCGGAGGTAATAGATTGGGATGCCAGAGAGAACCATGTCGAGTGTGAATCTCCCACCTCTAGAACATTAAAAAAAGAAAAGAAAAAAAAACAATGCTTTTATTTGCTTTTGTCAAGATTTATCCCCGAAATAGTAGTTTTCTGCCGGTTGATTTTGAGCCTTGAAACTAGCTCAACGATCTCTAAATCCTAGGAACAATAAGGTGTTGTCAGTGAATTGTTGATGACTTGTACGTTTTATTGCAACATAAGCTTGTGTTGTTTGGTGTTCAATGTATGTTCATGTTCCTGCATACTTCTGATATTACTCATTTATCAAGTGGGCTGCTTTCTGCTCAAGTCTGATGACAATTATGCAATAATTGAGCAGATTTGAACACCCGTGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGGTTTGGCTTTCTTGAGTTTTTTTCTTTAACTATCTGTTTGTGCCGATGGATTTTTATGGAATTTCTTTTCATGATAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAGCAGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAAGACAGTAAAGATACTCTAGAGTCATGGAATCTGCACGTCGCATCTTCGCTATTCAAGTGTAATTTTATGAAGAAAATTGTGTGAGAGCAAATCTTTCTAGTACTTTTTTTTAACACAAGAGTAGGATGGAAGAATAAATATTAATTACTATAGTTATATTCACTTTGATACATTTTTTTTTTTCTTGTTCTTTGAATCCTAAGTGGGAAAAGAAAAACTGTGATATATAGCAACTTTTAGATTGCCGGTTGGAAAAAAGACAAAATTCAGGTTTCTTTCAAAGAAAGGTAAGCACTCTACAGTGCACATTGGTTGTATTTTCGATGATAATTGAATTGGCCTCGATGGTCCTACAACAGATGTTCAAAATATGGTGCAAGTATATTTCACATGGTCAAATAACTATATTTCATATGAATTTACTAA

mRNA sequence

ATGAAGTATCGTTATGCAGTGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCTTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTTCTCCTCCCTATCATTTCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGTGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAGCAGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAAGACAGTAAAGATACTCTAGAGTCATGGAATCTGCACGTCGCATCTTCGCTATTCAAGTGTAATTTTATGAAGAAAATTGTGTGAGAGCAAATCTTTCTAGTACTTTTTTTTAACACAAGAGTAGGATGGAAGAATAAATATTAATTACTATAGTTATATTCACTTTGATACATTTTTTTTTTTCTTGTTCTTTGAATCCTAAGTGGGAAAAGAAAAACTGTGATATATAGCAACTTTTAGATTGCCGGTTGGAAAAAAGACAAAATTCAGGTTTCTTTCAAAGAAAGGTAAGCACTCTACAGTGCACATTGGTTGTATTTTCGATGATAATTGAATTGGCCTCGATGGTCCTACAACAGATGTTCAAAATATGGTGCAAGTATATTTCACATGGTCAAATAACTATATTTCATATGAATTTACTAA

Coding sequence (CDS)

ATGAAGTATCGTTATGCAGTGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCTTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTTCTCCTCCCTATCATTTCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGTGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAGCAGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

Protein sequence

MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQRRKLLYSISFY

Homology

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BLAST of Lsi02G000110 vs. Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-50
Identity = 103/210 (49.05%), Postives = 140/210 (66.67%), Query Frame = 1


Query: 4   RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGF 123
           DL RKD EL                    Y +NGIL ML RN  +K  P+R+Q N  D  
Sbjct: 67  DLLRKDKEL--------------------YTQNGILHMLDRNKRIKPRPERFQ-NCTD-L 126

Query: 124 FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER 183
           FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ 
Sbjct: 127 FDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQH 186

Query: 184 TESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 187 TEDMENEIDELLQEFEEKSGRAFLHTVCFY 194

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BLAST of Lsi02G000110 vs. Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.8e-50
Identity = 103/210 (49.05%), Postives = 140/210 (66.67%), Query Frame = 1


Query: 4   RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGF 123
           DL RKD EL                    Y +NGIL ML RN  +K  P+R+Q N  D  
Sbjct: 67  DLLRKDKEL--------------------YTQNGILHMLDRNKRIKPRPERFQ-NCKD-L 126

Query: 124 FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER 183
           FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ 
Sbjct: 127 FDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQH 186

Query: 184 TESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 187 TEDMENEIDELLQEFEEKSGRTFLHTVCFY 194

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BLAST of Lsi02G000110 vs. Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.8e-50
Identity = 103/210 (49.05%), Postives = 140/210 (66.67%), Query Frame = 1


Query: 4   RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGF 123
           DL RKD EL                    Y +NGIL ML RN  +K  P+R+Q N  D  
Sbjct: 67  DLLRKDKEL--------------------YTQNGILHMLDRNKRIKPRPERFQ-NCKD-L 126

Query: 124 FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER 183
           FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ 
Sbjct: 127 FDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQH 186

Query: 184 TESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 187 TEDMENEIDELLQEFEEKSGRAFLHTVCFY 194

[Close]

BLAST of Lsi02G000110 vs. Swiss-Prot
Match: SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.2e-50
Identity = 102/210 (48.57%), Postives = 140/210 (66.67%), Query Frame = 1


Query: 4   RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGF 123
           DL RKD EL                    Y +NGIL ML RN  +K  P+R+Q N  D  
Sbjct: 67  DLLRKDKEL--------------------YTQNGILHMLDRNKRIKPRPERFQ-NCKD-L 126

Query: 124 FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER 183
           FD++ T EE+V+D V+EDLN+R+    + V ++N++++DNHEEA +GA L  +LCQ I+ 
Sbjct: 127 FDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQH 186

Query: 184 TESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 187 TEDMENEIDELLQEFEEKSGRTFLHTVCFY 194

[Close]

BLAST of Lsi02G000110 vs. Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.1e-50
Identity = 102/210 (48.57%), Postives = 140/210 (66.67%), Query Frame = 1


Query: 4   RYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R AVVCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGF 123
           DL RKD EL                    Y +NGIL ML RN  +K  P+R+Q N  D  
Sbjct: 67  DLLRKDKEL--------------------YTQNGILHMLDRNKRIKPRPERFQ-NCKD-V 126

Query: 124 FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER 183
           FD++ T EE+V+D V+EDLN+R+    + V ++N++++DNHEEA +GA L  +LCQ I+ 
Sbjct: 127 FDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQH 186

Query: 184 TESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 187 TEDMENEIDELLQEFEEKSGRTFLHTVCFY 194

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BLAST of Lsi02G000110 vs. TrEMBL
Match: D7T1F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.7e-91
Identity = 168/213 (78.87%), Postives = 183/213 (85.92%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDP+LY                    KRNGILPMLKRN++VKTAPQRWQDNAA
Sbjct: 61  MFDDLRRKDPDLY--------------------KRNGILPMLKRNSSVKTAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVVFTFEEKVFDMV+EDL+ RDH LMKTVL++NLEVKDNHEEAAIGARL  DLCQE
Sbjct: 121 DGPFDVVFTFEEKVFDMVVEDLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE TESWEDS+DD+V  FEKQ RRKLLYSISFY
Sbjct: 181 IEATESWEDSVDDVVSGFEKQHRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. TrEMBL
Match: M5WAQ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.1e-89
Identity = 168/213 (78.87%), Postives = 177/213 (83.10%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDPELY                    KRNGILPMLKRN+ VK APQRWQDNAA
Sbjct: 61  MFDDLRRKDPELY--------------------KRNGILPMLKRNSTVKLAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVVFTFEEKVFDMV+EDLN RDH L K  LI+NLEVKDNHEEAA+GARL  DLCQE
Sbjct: 121 DGSFDVVFTFEEKVFDMVLEDLNNRDHVLKKCALIINLEVKDNHEEAAVGARLALDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE  ESWEDSIDDIV  FEKQQRRKLLYSISFY
Sbjct: 181 IEAAESWEDSIDDIVNGFEKQQRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. TrEMBL
Match: A0A0B0NIE4_GOSAR (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gossypium arboreum GN=F383_13107 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-87
Identity = 159/213 (74.65%), Postives = 180/213 (84.51%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDPELY                    KRNGILPMLKRN +VK APQRWQDNAA
Sbjct: 61  MFDDLRRKDPELY--------------------KRNGILPMLKRNLSVKLAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FD+VFTFEEKVFDMV+EDL+ RD  L+K+VL++NLEVKDNHEEAAIGAR+  DLC++
Sbjct: 121 DGCFDIVFTFEEKVFDMVLEDLHNRDQVLLKSVLVINLEVKDNHEEAAIGARIALDLCEQ 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE  ESWEDSIDDI+++FE + RRKLLYSISFY
Sbjct: 181 IEAVESWEDSIDDIMVSFENKHRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. TrEMBL
Match: A0A0D2TUD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-87
Identity = 159/213 (74.65%), Postives = 180/213 (84.51%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDPELY                    KRNGILPMLKRN +VK APQRWQDNAA
Sbjct: 61  MFDDLRRKDPELY--------------------KRNGILPMLKRNLSVKLAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FD+VFTFEEKVFDMV+EDL+ RD  L+K+VL++NLEVKDNHEEAAIGAR+  DLC++
Sbjct: 121 DGCFDIVFTFEEKVFDMVLEDLHNRDQVLLKSVLVINLEVKDNHEEAAIGARIALDLCEQ 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE  ESWEDSIDDI+++FE + RRKLLYSISFY
Sbjct: 181 IEAVESWEDSIDDIMVSFENKHRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. TrEMBL
Match: A0A067DWF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029458mg PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.4e-87
Identity = 162/213 (76.06%), Postives = 174/213 (81.69%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYA+VCSSNQNRSMEAH +LK  GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYK 
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDPELY                    KRNGILPMLKRN  VK APQRWQDNA 
Sbjct: 61  MFDDLRRKDPELY--------------------KRNGILPMLKRNIGVKAAPQRWQDNAL 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FD+VFTFEEKVFD V+EDLNTR+   MKTVL++NLEVKDNHEEAAIG RLTFDLCQE
Sbjct: 121 DGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE  ESWE+SIDDI+  FEK+ RRKLLYSISFY
Sbjct: 181 IEAAESWEESIDDIIAAFEKRHRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. TAIR10
Match: AT1G73820.1 (AT1G73820.1 Ssu72-like family protein)

HSP 1 Score: 308.5 bits (789), Expect = 3.1e-84
Identity = 150/213 (70.42%), Postives = 172/213 (80.75%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M++RYA+VCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFD+LRRKDPELY                    KRNGIL M+KRN +VK APQRWQDNA 
Sbjct: 61  MFDELRRKDPELY--------------------KRNGILQMIKRNLSVKLAPQRWQDNAG 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVV TFEEKVFD V+EDLN R+ +L KT+L++NLEVKDNHEEAAIG RL  +LCQE
Sbjct: 121 DGVFDVVMTFEEKVFDSVLEDLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE  E+WED+IDDIV  FEKQ RRKL+YSISFY
Sbjct: 181 IEGNETWEDTIDDIVAGFEKQHRRKLVYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. NCBI nr
Match: gi|659066237|ref|XP_008446784.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 1.0e-100
Identity = 190/213 (89.20%), Postives = 191/213 (89.67%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDPELY                    KRNGILPMLKRNAAVKTAPQRWQDNAA
Sbjct: 61  MFDDLRRKDPELY--------------------KRNGILPMLKRNAAVKTAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE
Sbjct: 121 DGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IERTESWEDSIDDIVITFEKQ RRKLLYSISFY
Sbjct: 181 IERTESWEDSIDDIVITFEKQLRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. NCBI nr
Match: gi|449439211|ref|XP_004137380.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 372.1 bits (954), Expect = 6.6e-100
Identity = 188/213 (88.26%), Postives = 190/213 (89.20%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYA+VCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDPELY                    KRNGILPMLKRNAAVKTAPQRWQDNAA
Sbjct: 61  MFDDLRRKDPELY--------------------KRNGILPMLKRNAAVKTAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVVFTFEEKVFDMVIEDLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTFDLCQE
Sbjct: 121 DGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IERTESWEDSIDDIVI FEKQ RRKLLYSISFY
Sbjct: 181 IERTESWEDSIDDIVINFEKQLRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. NCBI nr
Match: gi|225435973|ref|XP_002271255.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera])

HSP 1 Score: 343.6 bits (880), Expect = 2.5e-91
Identity = 168/213 (78.87%), Postives = 183/213 (85.92%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDP+LY                    KRNGILPMLKRN++VKTAPQRWQDNAA
Sbjct: 61  MFDDLRRKDPDLY--------------------KRNGILPMLKRNSSVKTAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVVFTFEEKVFDMV+EDL+ RDH LMKTVL++NLEVKDNHEEAAIGARL  DLCQE
Sbjct: 121 DGPFDVVFTFEEKVFDMVVEDLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE TESWEDS+DD+V  FEKQ RRKLLYSISFY
Sbjct: 181 IEATESWEDSVDDVVSGFEKQHRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. NCBI nr
Match: gi|595848953|ref|XP_007209633.1| (hypothetical protein PRUPE_ppa011857mg [Prunus persica])

HSP 1 Score: 336.7 bits (862), Expect = 3.1e-89
Identity = 168/213 (78.87%), Postives = 177/213 (83.10%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYA+VCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           MFDDLRRKDPELY                    KRNGILPMLKRN+ VK APQRWQDNAA
Sbjct: 61  MFDDLRRKDPELY--------------------KRNGILPMLKRNSTVKLAPQRWQDNAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVVFTFEEKVFDMV+EDLN RDH L K  LI+NLEVKDNHEEAA+GARL  DLCQE
Sbjct: 121 DGSFDVVFTFEEKVFDMVLEDLNNRDHVLKKCALIINLEVKDNHEEAAVGARLALDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE  ESWEDSIDDIV  FEKQQRRKLLYSISFY
Sbjct: 181 IEAAESWEDSIDDIVNGFEKQQRRKLLYSISFY 193

[Close]

BLAST of Lsi02G000110 vs. NCBI nr
Match: gi|502164958|ref|XP_004513347.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cicer arietinum])

HSP 1 Score: 333.6 bits (854), Expect = 2.6e-88
Identity = 164/213 (77.00%), Postives = 179/213 (84.04%), Query Frame = 1


Query: 1   MKYRYAVVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYA+VCSSNQNRSMEAHS+ K +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLFKRQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYPFSSPPYHFSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAA 120
           M D+LRRKDPELY                    KRNGILPMLKRN+ VK APQRWQ+NAA
Sbjct: 61  MLDELRRKDPELY--------------------KRNGILPMLKRNSGVKLAPQRWQENAA 120

Query: 121 DGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 180
           DG FDVV TFEEKVFDMVIEDL+ RDH L+KTVL+VNLEVKDNHEEAAIGARLT DLCQE
Sbjct: 121 DGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQE 180

Query: 181 IERTESWEDSIDDIVITFEKQQRRKLLYSISFY 214
           IE  ESWE+SIDDI++ FEKQ RRKLLYSISFY
Sbjct: 181 IEAVESWEESIDDIIVGFEKQHRRKLLYSISFY 193

The following BLAST results are available for this feature:

BLAST of Lsi02G000110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSU72_MOUSE	3.6e-50	49.05	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
SSU72_HUMAN	4.8e-50	49.05	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]
SSU72_RAT	4.8e-50	49.05	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg...	[more]
SSU72_BOVIN	6.2e-50	48.57	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN...	[more]
SSU72_CHICK	8.1e-50	48.57	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus...	[more]

BLAST of Lsi02G000110 vs. TrEMBL


Match Name	E-value	Identity	Description
D7T1F4_VITVI	1.7e-91	78.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=...	[more]
M5WAQ3_PRUPE	2.1e-89	78.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1	[more]
A0A0B0NIE4_GOSAR	2.0e-87	74.65	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gossypium arb...	[more]
A0A0D2TUD6_GOSRA	2.0e-87	74.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1	[more]
A0A067DWF9_CITSI	3.4e-87	76.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029458mg PE=4 SV=1	[more]

BLAST of Lsi02G000110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73820.1	3.1e-84	70.42	Ssu72-like family protein	[more]

BLAST of Lsi02G000110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066237\|ref\|XP_008446784.1\|	1.0e-100	89.20	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|449439211\|ref\|XP_004137380.1\|	6.6e-100	88.26	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|225435973\|ref\|XP_002271255.1\|	2.5e-91	78.87	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Viti...	[more]
gi\|595848953\|ref\|XP_007209633.1\|	3.1e-89	78.87	hypothetical protein PRUPE_ppa011857mg [Prunus persica]	[more]
gi\|502164958\|ref\|XP_004513347.1\|	2.6e-88	77.00	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cice...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0042967	acyl-carrier-protein biosynthetic process
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006369	termination of RNA polymerase II transcription
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0008420	CTD phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G000110.1	Lsi02G000110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 1..72 score: 3.1E-120coord: 93..213 score: 3.1E
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 4..73 score: 4.7E-32coord: 92..213 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G000110	Csa1G030640	Cucumber (Chinese Long) v2	culsiB022
Lsi02G000110	CSPI01G04960	Wild cucumber (PI 183967)	cpilsiB037
Lsi02G000110	Cucsa.112130	Cucumber (Gy14) v1	cgylsiB151
Lsi02G000110	CmaCh01G007470	Cucurbita maxima (Rimu)	cmalsiB410
Lsi02G000110	CmoCh01G007820	Cucurbita moschata (Rifu)	cmolsiB396
Lsi02G000110	Cla018666	Watermelon (97103) v1	lsiwmB212
Lsi02G000110	MELO3C001923	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G000110	ClCG04G012830	Watermelon (Charleston Gray)	lsiwcgB192
Lsi02G000110	MELO3C001923.2	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G000110	Cla97C04G079860	Watermelon (97103) v2	lsiwmbB184
Lsi02G000110	Bhi08G001588	Wax gourd	lsiwgoB241
Lsi02G000110	Cp4.1LG02g09880	Cucurbita pepo (Zucchini)	cpelsiB446
Lsi02G000110	CsGy1G004810	Cucumber (Gy14) v2	cgyblsiB033
Lsi02G000110	Carg06995	Silver-seed gourd	carlsiB474
Lsi02G000110	CsaV3_1G004910	Cucumber (Chinese Long) v3	cuclsiB037

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G000110	Cucumber (Gy14) v1	cgylsiB148
Lsi02G000110	Cucurbita maxima (Rimu)	cmalsiB211
Lsi02G000110	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G000110	Cucumber (Chinese Long) v2	culsiB036
Lsi02G000110	Cucurbita moschata (Rifu)	cmolsiB202