CsGy1G004810 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G004810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Location	Chr1 : 3194730 .. 3201490 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGCTTACTAGACTCCTCTTTGGCTTTGCTAAAGAGCCTTGGGCATCCATTTAACAAAGATTTCGAGAACATATTTGTAGGACGTTATGACAACCAGCTCAGCTCAATAGCTGAATTAAGGGTGAAATAACTTTCTTGTCAGAATTAATATTTGCCATTTACCTTAGTTTCCCTTACTAGTAGCGCAGCGGAGTGTTCCAAATTGTATCTTGGTGGCTACTCCCCTATTACTCGTAGCAACATCGAAAATTCACCATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTGTATCCTTTTTCTCCCCCAAAAACGACTCGAAGACTGGTGGGTACTATTTTTTCGTCTTTAGCGTTCTTAGTAACTTTCACTTTCTTAAATTTGTTGGATTCTCCTCTATTATAATTCAACCTTAAAACGTACATAGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGGTTAAGTTGCCTACTTCTTCAATTTATGCTAGTGAGAGTTATGCCCGTTTATCCATGCTCATTTTGGTGCTCTTGTGAAAGTTAATGGCACTGTACAATAGTAGAACTAGAACCCGTGTGATGATATTACAGCGATTTACTTTCAAGCATTTATTTTGAATGGCTATGCTTAGTGTTAAATTACTCTTATAGTTATATCCAAAGTCTTAAACTGATGGTGTCGTTGTTGGCTGCATTGCAAATTTTGAGCTTCGTGCATTAATAATACTATGGTAACATATCCTCCCCCCCAAAGAAATTGCATGGTGATTTATTTTATAATTTTTTCTATTTATTAATTGGAAGTCATGAATGGACGAATCCTTGATGAAAGACTTCCTGTGAGGAAATTTTATTTGTAGAGAGGAAATGCCCAGTTTAAAATCAAGGGGGTATACATTAGGTAGGAATAGAACTCCTCAACTGTTAAGTTATGCTCTTGTTGGCAACAAACACAAATAGTAATTCGAATTTTTTCAACTGTTATTAGCTGTCATTTGCAATAGGTGCCTTCTCAACTGGTAAGTTATTCTCATGTTGGCAATTACCACTGTTTGATGTTATAAGGTTTTTCCATTCTTTCGACAAAGGATATACCTATTAGGTTAAGTGGAAATCCACAAAGGCTCTCCTCTGTGGGGATCATTGGTGTTTATGCAGCCATGCCTGAGTTCGCAAATGAAGAATTTTATCTCTTTTTTGGATAAGATATCCTCCGTAGAGGTATGCATAAGGACCTGTTACCTGTGAGATAGGGGGCCGGGAGATGGGAGGTTGCACACGAAGGATTCAGATGAGAAGGTGCCTTCTGTCTCTTTCTTCCACTTCCAATAGTCTTCTTAAACTGCCACTAGGAAAGTATATGCTTGGCAAGTCAACAAACTGCTCTTCTTTTAAGTTTCTCCTCAGAACACAAGATCCAACAGGCATCACTACGGTTCCCATGGTTAGAAATAGTGCCTTCTTTCCTGAAAAATAAGAAGAAAAGCCTAGGAGAGGTTCCCTTGAAGGGGAAGATCCAATCCATAAATTGGACAAAAAGCTAGTGGATTTACCATCGTCTACCACGTTGAAAATATTGCTATAAATCAGCCCTTTTCGTAACAATGTATTTTCAAGGGCCTTTGGCAAAACTGAGAGAAATAGTGGCTGGTTTAAGGCTGAGGTGGAAAGTGCCATATTTTTCAGCAACAATACTTCTCCATGCAACTGTTTTTTCTATGTAGAATCTCCAAATTCATTTGGCTTTGTGTTTAGGGGTTAGATCCATAATCCCCAACCAAAAATGGAGACCTACACTGTTCAAATTGGAGAACAGGTGGTCCAATTACAGAGGATTCCTTCCCTTCGTAGAGTAATGGTACAATATAGTAGAAGAAAGAAGAGAGATAGTGCACGTGTTATTGAGGGTGAGGGCACACTACGTGATTAGTGTAGGGGAAGTTACAGTTAGTTAGAAGATAGGAGCGGTTAAGTAGGAAGGGAGTGGGAAAGGGAAAGGGGCAATCAGTTTGTGGGTAGTTTTTCTGCACTCTTCCTTGAGAGAGAGGATAGGCAGGAGGGTAATGTTTTTAACTTTGTGTTCTTAGTTTTCTGTATGTTTGAATCCAGAATTGTTTGTTCAACAATTCTACTTTGTAATTTTTGAAGTGTTTTTAATCAAATTAGAAAACAACTACTTGGTGTTCTATCACCTTCCCTCTGTAGGGCAATGGTGGAGCAAAACCCTGATTAGTGGCTGGCCTGGTTGATTTAATCAAAAGCTCAAAGGGCTGAGACTTGTCCTAAAGATATGGAATCAGTCCATCTCTGTTAACAATGTGTCATATCACAGAGAACACCTCACAGAACTGAATCAACAATGAATGGAAGGTTAATATAGTCACGTAGGCTCTTAATAATAGAAACACAGAGATCAAATAAATGCTTTTATCCATTGCTGCTGATGAAAAGATTAGATGGTGTCAGAAATGCAAAGTCAAATGGGAAGGGGATAGTAATACCACCTTTTTTCACAGTTATGAGGCTGCTTGAAAATGTAGAAGGCCATAACAGATGTTTTTAACACACAGAATGAAAGTTTGCTCTTAGATGGTGAGATCGAGGCTGCCCTTTTGAATTTCTACAAGCATCTCTTTACCAAGAAACTGGGCAGAAGACTTCTCCATCAAAATCTTGATTGAGATCATATTAATCTTGAACAAGCAACCAGCTTAGAGGCTTTTTCCCAGAAGATGGAATATGGGTGGCAGCGAAGGCTCTAGGCACCAACAACACCTCAGACAGGATGGTTTTACAACATAATTCTTTTTAAAATCTTGGAATATTCTCAACCCCGACCTAATTAAAGTGTTTCAAGACTTTCCTCTTCAAGATCATTGCTTGTGTACTTTTCAAACGTGTCAAAAAGTCGTCTCAACTGTCGTGGATTACTAATCCGCTTTTGTGGAGGTTAGACAAATTTTGGATGCTTTGATCATTGCTGGTGAGATCATAGAACAATGCTATAAGGAGAAAACTCAAGGTGTTATCATCAAGCTTTTTATGAAAAAAGCTTTTGATAAAGTGGATCGAGAATGCATTGATGATATTTTGAAAGTGAAAGGATTTGGTTTCAAATAGGGACTCTGGATCAAAGTTTTAGGACACCAATTGTGCATCAGTATAGGAGGAGGGGTAGGGGTAATTCAGGCACAAGAATTTTAAGGGGTGGGAACCACGTAGGAGAGTAGTATATATACTCTCTGTATGTGCTGAAAGCAAGGGGGTTAGTCTGGGGATAGCTTTTCGAGAGTGGAAGATAGGGAGTTAGGGACAATCATTTGTGATTGTGCCCTAGAATTTGTATTTGTCGATCATTTGCTTCTTCAATAAAGATTGATACCTTTCATATCGGTATCAAAGCAATCAAACCTCGGGAAAATATAAAAAATATGGCAATTCGTGGAGATTCAGAAACTACTGAAGATGGAGGAATCCATGAAGTCTTTGTCGAAAAGTGTGTAATGGTTGAATGTGCAAGGGATAGTCAACAACAAAGTTCGGAAGAGATGAAGAAGTTGTTGACGGATCTATTGATTGAGATTGCGCAAGTGCGATCTAATACAATTTCAAATACAGACAGAGGAGAGTCAAATGGAAGTAAGAATGTGAAATAAATGATAGAAGGAACATCCACGATGAATGAAGCAAGGGAGTAGGAGATGCAGGTGATCATTGGTTGGTCGGAGTCAGTTTTTCGACCAAACCGACACTGAACCGCCTATGGTCGGTTTAGTAAATGTTCAAATAGACCTCGATCATCAATGAGTAAATGTCGGTATGTTGATTTTTTGTTGGTCGGTTTAACTCTTTGAAATTTCTCAATTTGGAACTTTCCCAAACCAACACCGACCAACTTCGGTTTGGTCAGTCTGGTCGGTTTTTCAATCTATCATGTTCACCCCTTATAGGAGATCAGGGAGCAGATTTTAGGTAGAGTGTAGGTTTCTGCAAGGAAGCTACACTAGAGAGGAAGGAGATTAGGGATTCTTGGTAGAGTGCAGATCTTTGCAAGGAATGGAGTCTTTGCAGGGATTCATGAAGTCTTGGAAGCAATATTTCAATCCAACTGAAGCTTTGACAAAAGTCTTACTGAAGTACGATGATGTATTTGATTTGCAGAAGAATTGCCTTCGAGCTGGGGAGTAGACCATCACACTCATTTTAAAGAAGGAGAGGGCCCATTTAATTTGATGCCGTATAGATATGCCCATAGTTAGAAGTTTGAGATGGAGAAAATGGTAGTTTACATGCTTAGTCCTTATTCTACTCCAATGTTATTGGTTAAAAAAGACAGATGATGGAGGTTTTACATGGATTATAGGGTGTTGAACAACGTTACTGTTGTAGATAAATTCCCATTACCTATAGTAGATGAGTTGTTCAATGAATTAAATGGGGCAGTGTGGTTTTCTAAAATTGATTTGAAGTCCTGATATCATCAGATTAGGATGCATCCTGCTGATATGGAGAACCCTGCTTTTCATACATATGAGGGTCATTACAAATTCTTGGTAATGTCTTTCGCATTGATCAATGCACCATTTACATTTCAAGCTTTGATGAATCAAATTTTTAAATCATACTTGAGGAAGTTTGTTTTGGTATTTTTTATGCTATTTTGGTATACAGTAAGAGTACGTAAGAGCATCTAGAGCATTTGGAGATAGTGTTGGCTGTGTTGGTGGACAGTGAATTATATGCTAAATTCTGCGTGGAAGATCAGAGTATTTGGGGCATATTATTTCTAGTGAAGGAGTAGAAGTGACCCCAACAAGATACGAGCCGTGTTGGATTGGCCGGCTACTACATGTATTCGAGAGGTGTGGAGTTTTCTAGGTTTAACTGGATACTATTGAAGCTTTGTTCAGAATTATGGAAGTATGGCTGCATCACTTATGCAACTGTTATAAAAAGGAGCTTATCAATGGTTGGCTGAAGCAAATGAAGCGTTTGAAGGATTGAAGAACGCCATGGTGACTTTACCTGTGTTGGTGAGGGCAAAGAAGGAAGTGGAACATAGGCTTAAACTATTAAAAAAAATTATTCTTTTATGGATTTTGTTTTAAGAAAGCTTTCACTAAGCCACCTATTGTTTTGAAAGGAGTATAACTTTTATTAGTTTGACAATGTATTTCATAGTTAAGTTGGGATACGTTCTTAACACGACACAACATGGTGCTTGGTGTGGCATTTTCCTTAAAAGATACTCATATCGAGACATTCTACACATGGGAGGAGTGATGTGGCGTCATGGCCTTCCAACTTACAAAAATGGTGTCGCTCCATCACTTTTTCTAGAGACTCCTCTCCAAAAGAAACCTTGTATGGATCTCTCCAAACTCTTTATAACCTTTCAAGATGCTCGAAAATTTGGAGATAATAGATTGGGATGCCATAGAGAACCACGTTGAGTGAATCTCCCACCTCTAGAACATAAAATAGAGAAGAAAAAAAGTACCCCAATGCCTTTATTTGCTTGTCAATAGTTTTCCCCGAAATATTAGTTTGGTGCCGTTGATTTTGAGCCTTGAAACTAGCTCAATGGTCTCTAAATCCTAAAACCAAAAAGATGCTGTCAGTTGATTTGTTGATTACTTGTAGTTTGTATTGCAACATAAGCTTGTGTTGTTGGTGTTTAATATGTTCATGCTCCTGCATACTTCTGATATTATTCACTTATTAAGTGGGCCTCCTTCTGGTCAAATGTTTGTTGACAATTATGCAATAATTGGGCAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCGCGACTTACTTTTGATCTTTGCCAGGAGGTCTGGCTCTCTAACTCTCTTGATTTTATTTTATTCATTATCCGTTTGTGTCGATGGAGTTTTATGGAATATCTTTTCATGATAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAGGACAATATCCGGGAGTACATGGAGTCTGCGTACATCGAATCTTCCGTATTCAAGTGTGATTTTATGAAAATTTTGAGTGAACAAGTCTCTTCTTAGTACTTTTATATTAACATGACAATACAAAGATTTGACTTTCAACTTGAGAGAAAGAATAAAGGGCAATTACTACGTAGTTTTATTCAATGATTTCGTTCTGCGTATTTTGAGTGGAAAATTGATATTCGAAGGGGGGGTATATTTGGTAAATTTTTGGAAATTTTTTAGTAAAAAAAAATATATGTTTTTTAGAACAAATCTCTTCTTAGTACTTTTATATGCATGTTATGATGTAACTATAAATAATTAGATATGACTTGTTTTTGTTCTTGAATAAAGATTTTT

mRNA sequence

GGGGCTTACTAGACTCCTCTTTGGCTTTGCTAAAGAGCCTTGGGCATCCATTTAACAAAGATTTCGAGAACATATTTGTAGGACGTTATGACAACCAGCTCAGCTCAATAGCTGAATTAAGGGTGAAATAACTTTCTTGTCAGAATTAATATTTGCCATTTACCTTAGTTTCCCTTACTAGTAGCGCAGCGGAGTGTTCCAAATTGTATCTTGGTGGCTACTCCCCTATTACTCGTAGCAACATCGAAAATTCACCATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCGCGACTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAGGACAATATCCGGGAGTACATGGAGTCTGCGTACATCGAATCTTCCGTATTCAAGTGTGATTTTATGAAAATTTTGAGTGAACAAGTCTCTTCTTAGTACTTTTATATTAACATGACAATACAAAGATTTGACTTTCAACTTGAGAGAAAGAATAAAGGGCAATTACTACGTAGTTTTATTCAATGATTTCGTTCTGCGTATTTTGAGTGGAAAATTGATATTCGAAGGGGGGGTATATTTGGTAAATTTTTGGAAATTTTTTAGTAAAAAAAAATATATGTTTTTTAGAACAAATCTCTTCTTAGTACTTTTATATGCATGTTATGATGTAACTATAAATAATTAGATATGACTTGTTTTTGTTCTTGAATAAAGATTTTT

Coding sequence (CDS)

ATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCGCGACTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

Protein sequence

MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY

Homology

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BLAST of CsGy1G004810 vs. NCBI nr
Match: XP_004137380.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 6.3e-106
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK
Sbjct: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180

Query: 181 QLRRKLLYSISFY 194
           QLRRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. NCBI nr
Match: XP_008446784.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 389.4 bits (999), Expect = 7.0e-105
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 QLRRKLLYSISFY 194
           QLRRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. NCBI nr
Match: XP_022137335.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Momordica charantia])

HSP 1 Score: 377.5 bits (968), Expect = 2.7e-101
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNA VKTAPQRWQDNAADGSFDVVF+FEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNATVKTAPQRWQDNAADGSFDVVFSFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDH +MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWE +IDDIVI FEK
Sbjct: 121 DLNTRDHGLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEGTIDDIVIAFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. NCBI nr
Match: XP_022948646.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_022948647.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_023523675.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo] >XP_023523676.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.5 bits (968), Expect = 2.7e-101
Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDH +MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 QLRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. NCBI nr
Match: XP_022997876.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima] >XP_022997877.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima])

HSP 1 Score: 377.1 bits (967), Expect = 3.6e-101
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 QLRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. TAIR10
Match: AT1G73820.1 (Ssu72-like family protein)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-87
Identity = 150/193 (77.72%), Postives = 172/193 (89.12%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLN R+ ++ KT+L++NLEVKDNHEEAAIG RL  +LCQEIE  E+WED+IDDIV  FEK
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKL+YSISFY
Sbjct: 181 QHRRKLVYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. Swiss-Prot
Match: sp|Q6PC19|SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio OX=7955 GN=ssu72 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.5e-53
Identity = 98/190 (51.58%), Postives = 141/190 (74.21%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN
Sbjct: 67  DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+ T+  E+ +D+++  FE++  
Sbjct: 127 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSH 186

Query: 184 RKLLYSISFY 194
           R  L+S+ FY
Sbjct: 187 RPFLHSVCFY 194

[Close]

BLAST of CsGy1G004810 vs. Swiss-Prot
Match: sp|Q9CY97|SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus OX=10090 GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.5e-53
Identity = 102/190 (53.68%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

[Close]

BLAST of CsGy1G004810 vs. Swiss-Prot
Match: sp|Q9NP77|SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens OX=9606 GN=SSU72 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-53
Identity = 102/190 (53.68%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]

BLAST of CsGy1G004810 vs. Swiss-Prot
Match: sp|Q4KLK9|SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus OX=10116 GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-53
Identity = 102/190 (53.68%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

[Close]

BLAST of CsGy1G004810 vs. Swiss-Prot
Match: sp|Q17QI2|SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX=9913 GN=SSU72 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.4e-53
Identity = 101/190 (53.16%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]

BLAST of CsGy1G004810 vs. TrEMBL
Match: tr|A0A1S3BFX9|A0A1S3BFX9_CUCME (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cucumis melo OX=3656 GN=LOC103489144 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 4.6e-105
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 QLRRKLLYSISFY 194
           QLRRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. TrEMBL
Match: tr|A0A2P5FAG2|A0A2P5FAG2_9ROSA (RNA polymerase II subunit A OS=Trema orientalis OX=63057 GN=TorRG33x02_092930 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.5e-95
Identity = 170/193 (88.08%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 21  MKYRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 80

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VKTAPQRWQDNAADG+FDVVFTFEEKVFDMVIE
Sbjct: 81  MFDDLRRKDPELYKRNGILPMLKRNSTVKTAPQRWQDNAADGTFDVVFTFEEKVFDMVIE 140

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+TR+H +MK+VL++NLEVKDNHEEAA+GARL  DLCQEIE TE WEDSIDD+V  FEK
Sbjct: 141 DLHTREHVLMKSVLVINLEVKDNHEEAAVGARLALDLCQEIEETEMWEDSIDDVVAAFEK 200

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 201 QHRRKLLYSISFY 213

[Close]

BLAST of CsGy1G004810 vs. TrEMBL
Match: tr|A0A2N9GAG4|A0A2N9GAG4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24026 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.5e-95
Identity = 171/193 (88.60%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+AVK APQRWQ+NAADGSFDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSAVKLAPQRWQENAADGSFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+ RDH +MKTVL++NLEVKDNHEEAAIGARLT DLCQEIE TESWEDSIDDI+  FEK
Sbjct: 121 DLHNRDHTLMKTVLVINLEVKDNHEEAAIGARLTLDLCQEIEATESWEDSIDDIIAAFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. TrEMBL
Match: tr|D7T1F4|D7T1F4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 4.3e-95
Identity = 168/193 (87.05%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+ RDH +MKTVL++NLEVKDNHEEAAIGARL  DLCQEIE TESWEDS+DD+V  FEK
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEIEATESWEDSVDDVVSGFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]

BLAST of CsGy1G004810 vs. TrEMBL
Match: tr|A0A2I4DHJ6|A0A2I4DHJ6_9ROSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Juglans regia OX=51240 GN=LOC108980210 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 5.3e-93
Identity = 167/193 (86.53%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKREGFEVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           M++DLRRKD ELYKRNGILPMLKRN+ VK APQRWQDNAADGSFDVVFTFEEKVFD+V+E
Sbjct: 61  MYEDLRRKDSELYKRNGILPMLKRNSTVKLAPQRWQDNAADGSFDVVFTFEEKVFDIVVE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+ RDH ++KTVL++NLEVKDNHEEAAIGARLT DLCQEIE +ESWEDSIDDIV NFEK
Sbjct: 121 DLHNRDHVLLKTVLVINLEVKDNHEEAAIGARLTLDLCQEIEVSESWEDSIDDIVANFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

The following BLAST results are available for this feature:

BLAST of CsGy1G004810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137380.1	6.3e-106	100.00	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
XP_008446784.1	7.0e-105	98.96	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
XP_022137335.1	2.7e-101	95.85	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Momordica chara...	[more]
XP_022948646.1	2.7e-101	95.85	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita mosch...	[more]
XP_022997876.1	3.6e-101	95.85	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxim...	[more]

BLAST of CsGy1G004810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73820.1	1.2e-87	77.72	Ssu72-like family protein	[more]

BLAST of CsGy1G004810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6PC19\|SSU72_DANRE	5.5e-53	51.58	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio O...	[more]
sp\|Q9CY97\|SSU72_MOUSE	5.5e-53	53.68	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
sp\|Q9NP77\|SSU72_HUMAN	7.2e-53	53.68	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]
sp\|Q4KLK9\|SSU72_RAT	7.2e-53	53.68	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg...	[more]
sp\|Q17QI2\|SSU72_BOVIN	9.4e-53	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX...	[more]

BLAST of CsGy1G004810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFX9\|A0A1S3BFX9_CUCME	4.6e-105	98.96	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cucumis melo ...	[more]
tr\|A0A2P5FAG2\|A0A2P5FAG2_9ROSA	1.5e-95	88.08	RNA polymerase II subunit A OS=Trema orientalis OX=63057 GN=TorRG33x02_092930 PE...	[more]
tr\|A0A2N9GAG4\|A0A2N9GAG4_FAGSY	2.5e-95	88.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24026 PE=4 SV=1	[more]
tr\|D7T1F4\|D7T1F4_VITVI	4.3e-95	87.05	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g01900 PE=4 SV=...	[more]
tr\|A0A2I4DHJ6\|A0A2I4DHJ6_9ROSI	5.3e-93	86.53	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Juglans regia...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006369	termination of RNA polymerase II transcription
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006470	protein dephosphorylation
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008420	CTD phosphatase activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G004810.1	CsGy1G004810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 1..74 e-value: 5.2E-16 score: 60.6
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 75..193 e-value: 1.1E-37 score: 130.9
None	No IPR available	PANTHER	PTHR20383:SF9	RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72	coord: 1..193
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 4..193 e-value: 1.3E-80 score: 269.4
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 1..193

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G004810	Cla018666	Watermelon (97103) v1	cgybwmB062
CsGy1G004810	Csa1G030640	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G004810	MELO3C001923	Melon (DHL92) v3.5.1	cgybmeB018
CsGy1G004810	ClCG04G012830	Watermelon (Charleston Gray)	cgybwcgB051
CsGy1G004810	CSPI01G04960	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G004810	CmaCh01G007470	Cucurbita maxima (Rimu)	cgybcmaB105
CsGy1G004810	Lsi02G000110	Bottle gourd (USVL1VR-Ls)	cgyblsiB033
CsGy1G004810	Cp4.1LG02g09880	Cucurbita pepo (Zucchini)	cgybcpeB093
CsGy1G004810	MELO3C001923.2	Melon (DHL92) v3.6.1	cgybmedB016
CsGy1G004810	CsaV3_1G004910	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G004810	Cla97C04G079860	Watermelon (97103) v2	cgybwmbB051
CsGy1G004810	Bhi08G001588	Wax gourd	cgybwgoB055
CsGy1G004810	Carg06995	Silver-seed gourd	carcgybB0522

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G004810	Watermelon (97103) v2	cgybwmbB053
CsGy1G004810	Wax gourd	cgybwgoB031
CsGy1G004810	Cucurbita maxima (Rimu)	cgybcmaB111
CsGy1G004810	Cucurbita moschata (Rifu)	cgybcmoB099
CsGy1G004810	Cucurbita moschata (Rifu)	cgybcmoB106
CsGy1G004810	Cucurbita pepo (Zucchini)	cgybcpeB098
CsGy1G004810	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G004810	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G004810	Watermelon (97103) v1	cgybwmB064
CsGy1G004810	Silver-seed gourd	carcgybB0526