CmaCh01G007470 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G007470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Location	Cma_Chr01 : 4004860 .. 4009538 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCAAGGCCCAAACAACCCTTCTGAGAGCACTCCTAAAAAGAATTATCTTTGTCCTTTCTTTATGGGTAAAATGAAGGCTATAAGAGTACTCAAATTCCCGACGAAATTCAACTGTGATCAACCGTAATCGTGCTGCTCCCACGCCGGTTTCTCATCGGAGATTCGCCATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAATGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACTCCCTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCCGGTGGTACTAATTTCTTGTCTTAAGCATTTGTTTTACTTAACTTCCGAGTTGGACTGTTCTAGATCTCAGTAATGGTTTAACCTTAAAACTTGCATAGATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAACGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGGTTAGTTTGCCATCTTGAATTTATGCTTGTGAAAGTTAATGGCTCTGCAACGTACGATAGTAGAATTCTTGGATTCTTTTGCGAGCTCTAACGATGCTTTTTTTCAAGTTTACTTCCAGCAGTTCTGTGCTATATATATAAGATTTATTGTGACTATATTGCCATTGGGACTTGGTTGTGATGGATTGCTGTTGGACCAAGAAGTTGTTAGGTGCTTATAAGTAGTTTGATGATCAATCCCTAGCATTTATATAAACAGTGATTACATATTCTATATCAGCTTCTGGAGGTTTTTTTCTTTGTGTTTTTTAATTATTAATTAGAAGTCATGAATCCTTGACGAAAGACTTTGTGTGAGGAAATTTTACTTGTAGAGAGGAAATGGCCAGTGTGCCAGTGTAAGATCAGGGTAAGCATTAAGCGGGAGAACAGTTGAGTCATCGGTAAGAAATCGAGCTTTCATTGAGAAAAATGAAAGAATATACAAGGGCAATAAAAAAAAAAAACAAGCCCAATAAAACAAAACAAACATCCCTAAAAGCTACAGAAAGGGACTCCATTGTAACAAAATCACGCCAAGACCATAATTATAGAAAGGCTTAGTGACTGATGCCCACAAAGAGGCATTAAACCTAACCACCATCTAGACCTCATCCACAAGGCTGCTTTAACTCTCTCAAATTTTGATTGTTTCTTTCAACCCAAACTCCCCCAAAACAGTAAAGAAACTAGCATGCCACAAAATAGTCCCACTCTCACGAAAAGGTGACCCCATAAGCGCCTTATCGATTGAAGCAAAACAATCATCATTCCACACCCAAATTAAATCAAAGAAGGAGCACCTACCCAAAGGGACTGACTACAAAGGATAAAATAGGCGTTTTTAACTCCTAAGCTATGCTCATGTTGGTTGCAATCATAGATGGTATAGTAGTGATATTTAGGCTCGGGAAGAATTATGTTTGTGTCAGATGCATGTGTCACTGTCATGTTGGTTTTTAGGTAAATTTAGTAATATAATTCATAATGGCTTGGATAAAAAATGTTATTTTTCCCTTAGAAATAGGATTTTCTTCCCTGTTGCAAACCACATCTAATAATCCAATATGATTTTTCTCATGTTATTTGACGTTGAATAAAGACAAACAATTATGAAGTAGAATGAATGGGATACATCTGAAAACTAGGGAAAAGACAGCCTAAGAGCTCCAATTTGAGAAAGTTAAAAGCAGTATACTTAGTTTTATTCCCAAAGGCCCGTTATAATGGTATTCATGCAAAGAATTCGAATATTTGCCAATTTTTTAGGTTGTGCTCAGGTAAGCACTATTCTATTCCATGGTTTCTTTAACTGATGATGGGAGGCTTCAAGAGATGCTGAAATTGTTGATGATGTATTTCCATAGAGAGTTTTTGTATTTACTGTGAAGAAAAAGATAACTTGTTTCTTCCCTATGCCCTCTCTACAAAGGATATGCCAGTTTTTTGGAGACAATTTTGATGCCTAATTTGAAATCACTCCTTGCTGTTAAGTTCTTCAATGGAAAGCTGCCAGAAAGTTATTTAAACCTTCTTACGGATATTACTTCTCCAGATGCATTTTGTCATGTGATTACAGATGGCCAATTGACAAATCCTCGATCTGATTTTACTAGCAAATGAGGTTGTGGAAGTTTATAGAGCTAAAAAGAAGCGAGGATGGATTCTGAAATTAGACATTGAAAAAGCTTTTATTTGTGTTGATTTTCACCATTGTCAAGATTAATTTTATACAATTTCTCTGCTATACAACAAGTCTTATAGATGGATTTCCAGTCCCCTTGGTTGGGCGGGTGGCCTTTCTAATTTGGAACCGCTCCTCCTTCGCTAGCGATTACTTCTTTCCATAGGGCAGCTGGCCCTTTCATAAATCTCCATCCCCATTTTGCAAGTAAGCTGATGCTCTACCTTTAAGTTTTTTCATAACAAGGTTTTCTCTAAATGTAGGGAGTGATGTGGTCTTCCAATTTACAAGAATGCCACCACTCTCTCTAGAGGCTCCTCTCCAGAAGAAATCATATATAGACGTCTCCAGACTCTGTAAAACCTTCCCAAAGCACTAAAAATTTAGAGGTAATAGATTGGGATGCTAGAAAGAACTGCATTAGCAAGTGTGTGTTGAATCTCTTGAACATAAAAGATTACCCTAATTTGAGAGCTTAGAGGCTATCTTCTCCTCAACTGGAGTCCAAAACATTTGAAACTTAGGGTTGCTCCAATGACACTCTTAACTCCTAAGTTAGGCAGAAGCCAGTTCCCAACATTGCAATTCCATCTTTCAGCAGCATTCTTTTCTTTGCTTTCATCTAGATTTGTGACCGAAATGGTAATCTTCTACCAATTGATTTTAAGCCCTAAAACTAGCTAAAAAATGTCGACAATCTCCTTTGACTTTAACTTATCTTCACTATATTCTAAGAACAAGACTCACGTGAATTTGATATCTACCCACCAAGAAGCCATTTACGCTTCCTCTTTCATAAGCCTTCTCCAGCATTCATCACATCAGCTACAATCACAAAGAGAACAGGGCTAAGGGGTCTCTTGCCTCAAGCCCCTAGATTCTTAAATAAGGTCTCTTGGCCATCTAAAACAAAGATTGGAAAAAAGGTGTTAGTAATATAACTTCTATCCATCCCACACACCTTTCTCCAAAGCCTTTGTTTTGAAGGACATCAAGCAAGAAATCCCAATCCACGACTTCCTAAGCTTTTTCAAAGTCAAGCTTGATGACTCAACCTTTCTTCTTCTTGTATTTATACTCACCAACTAGCTCATTCGCCACGAGGATTAAATCAAGGGTCCGTCTTCCAAAATGAACATCAAGTGGATAAGAGAGATGATAAGTGGCAACACATCCTAAGCTTTTTCGACATCAAGCTTGATCACTTAACCTTTCTTCTTCTTGCATTTATACTCACCCAATTAGCTCATTTGTCACAAGGAATAAATCAAGGGTCCGTCTTCAAAAATGAACATCAAATGGCTATAAGAGATGATAAGAGGGAACACTTTCCTTAGCCTATTAGCAAGAACTTTAGCCACAACTTTATTAACACTAGTTACAAGGCTAATGGACCTATAATCAGCCACCTTTGGCAATCCTGTTCTTTTCAGGATGAGGCATAAGTAGGTTTTGTTCATGCTCTTGTTTAGGACACCTTTTGTCTCTTACCAAAAAAAAAAAAAAAAAGAAGATACCCCTATATTATCTGATATTATGTCAAGGAACTATTGTTTAGTCTGATTATTGCATCATAAGCTTACGTTCTTGGCGTTCAATGTGTGCTTATGTTCATATATACTTTTTATATTACTCATTTATCAAGGTGACCGCTTCTGAAATATTTTTCCTACTCAACCGTCTGATGATAATTATGCAATAATTGAGCAGATCTCAACACACGTGATCATGCACTGATGAAAACTGTACTGATTGTGAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTAATCTTTGCCAGGAGGTCCAGCTCTCTTGAATTTTATTCTTTTCATTATTCGTTTGTGTGGATTTGTTATGATTTTTTTTTTTTGTTGCTTTTTACGATAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAGCATCAAAGAAGAAAGCTGTTGTATAGCATTTCCTTTTACTGAAAGACACCATGATCCTACTGGAGTACGGAATATGTGCTGCTGCAACTGTAAGCATATTGGTCATTTTATTCGGTTGCTCCCTTTTGTAGTACTTCTTTTCAAGAAACCAAAAACTAAAGTAGGAAAATAGCTTGTTGGCGGAGTCTGCTTACATCAACTCTTTGTGATTCAGTTCATACTCTAATACACTTTTTGGACCCTAAAAGTATCTATTGGTCCTTGAAGATTCAAAATTAGCATTTTAGTCCATGAATTTTATAAAATAGTTATATAATTGACCACTTGTGGAA

mRNA sequence

CCGCAAGGCCCAAACAACCCTTCTGAGAGCACTCCTAAAAAGAATTATCTTTGTCCTTTCTTTATGGGTAAAATGAAGGCTATAAGAGTACTCAAATTCCCGACGAAATTCAACTGTGATCAACCGTAATCGTGCTGCTCCCACGCCGGTTTCTCATCGGAGATTCGCCATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAATGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACTCCCTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAACGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATCTCAACACACGTGATCATGCACTGATGAAAACTGTACTGATTGTGAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTAATCTTTGCCAGGAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAGCATCAAAGAAGAAAGCTGTTGTATAGCATTTCCTTTTACTGAAAGACACCATGATCCTACTGGAGTACGGAATATGTGCTGCTGCAACTGTAAGCATATTGGTCATTTTATTCGGTTGCTCCCTTTTGTAGTACTTCTTTTCAAGAAACCAAAAACTAAAGTAGGAAAATAGCTTGTTGGCGGAGTCTGCTTACATCAACTCTTTGTGATTCAGTTCATACTCTAATACACTTTTTGGACCCTAAAAGTATCTATTGGTCCTTGAAGATTCAAAATTAGCATTTTAGTCCATGAATTTTATAAAATAGTTATATAATTGACCACTTGTGGAA

Coding sequence (CDS)

ATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAATGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACTCCCTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAACGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATCTCAACACACGTGATCATGCACTGATGAAAACTGTACTGATTGTGAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTAATCTTTGCCAGGAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAGCATCAAAGAAGAAAGCTGTTGTATAGCATTTCCTTTTACTGA

Protein sequence

MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEKHQRRKLLYSISFY

Homology

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BLAST of CmaCh01G007470 vs. Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 101/190 (53.16%), Postives = 137/190 (72.11%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L   LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

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BLAST of CmaCh01G007470 vs. Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-52
Identity = 101/190 (53.16%), Postives = 137/190 (72.11%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L   LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

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BLAST of CmaCh01G007470 vs. Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-52
Identity = 101/190 (53.16%), Postives = 137/190 (72.11%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L   LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

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BLAST of CmaCh01G007470 vs. Swiss-Prot
Match: SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-52
Identity = 100/190 (52.63%), Postives = 137/190 (72.11%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V ++N++++DNHEEA +GA L   LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

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BLAST of CmaCh01G007470 vs. Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.0e-52
Identity = 100/190 (52.63%), Postives = 137/190 (72.11%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V ++N++++DNHEEA +GA L   LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

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BLAST of CmaCh01G007470 vs. TrEMBL
Match: D7T1F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 9.9e-94
Identity = 165/193 (85.49%), Postives = 181/193 (93.78%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DL+ RDH LMKTVL++NLEVKDNHEEAAIGARL  +LCQEIE  ESWED++DD+V  FEK
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEIEATESWEDSVDDVVSGFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

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BLAST of CmaCh01G007470 vs. TrEMBL
Match: M5WAQ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.1e-92
Identity = 167/193 (86.53%), Postives = 177/193 (91.71%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VK APQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSTVKLAPQRWQDNAADGSFDVVFTFEEKVFDMVLE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLN RDH L K  LI+NLEVKDNHEEAA+GARL  +LCQEIE AESWED+IDDIV  FEK
Sbjct: 121 DLNNRDHVLKKCALIINLEVKDNHEEAAVGARLALDLCQEIEAAESWEDSIDDIVNGFEK 180

Query: 181 HQRRKLLYSISFY 194
            QRRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

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BLAST of CmaCh01G007470 vs. TrEMBL
Match: A0A067DWF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029458mg PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.5e-91
Identity = 163/193 (84.46%), Postives = 175/193 (90.67%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAH +LK  GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYK 
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN  VK APQRWQDNA DG FD+VFTFEEKVFD V+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTR+   MKTVL++NLEVKDNHEEAAIG RLTF+LCQEIE AESWE++IDDI+ AFEK
Sbjct: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 RHRRKLLYSISFY 193

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BLAST of CmaCh01G007470 vs. TrEMBL
Match: V4SC52_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005966mg PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.5e-91
Identity = 163/193 (84.46%), Postives = 175/193 (90.67%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAH +LK  GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYK 
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN  VK APQRWQDNA DG FD+VFTFEEKVFD V+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTR+   MKTVL++NLEVKDNHEEAAIG RLTF+LCQEIE AESWE++IDDI+ AFEK
Sbjct: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 RHRRKLLYSISFY 193

[Close]

BLAST of CmaCh01G007470 vs. TrEMBL
Match: B9RPG0_RICCO (Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.0e-90
Identity = 162/193 (83.94%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKLRYAMVCSSNQNRSMEAHSLLKMQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VK APQRWQDNAADG FDVVF+FEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKLAPQRWQDNAADGSFDVVFSFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DL+ RDH LM++VL++NLEVKDNHEEAAIGARL   LCQEIE AESWED+ID+I+ AFE 
Sbjct: 121 DLHNRDHVLMRSVLVINLEVKDNHEEAAIGARLALELCQEIEAAESWEDSIDEIITAFET 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYS+SFY
Sbjct: 181 KHRRKLLYSVSFY 193

[Close]

BLAST of CmaCh01G007470 vs. TAIR10
Match: AT1G73820.1 (AT1G73820.1 Ssu72-like family protein)

HSP 1 Score: 320.9 bits (821), Expect = 5.5e-88
Identity = 151/193 (78.24%), Postives = 170/193 (88.08%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLN R+ +L KT+L++NLEVKDNHEEAAIG RL   LCQEIE  E+WEDTIDDIV  FEK
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKL+YSISFY
Sbjct: 181 QHRRKLVYSISFY 193

[Close]

BLAST of CmaCh01G007470 vs. NCBI nr
Match: gi|659066237|ref|XP_008446784.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 3.7e-102
Identity = 186/193 (96.37%), Postives = 188/193 (97.41%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of CmaCh01G007470 vs. NCBI nr
Match: gi|449439211|ref|XP_004137380.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 1.1e-101
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of CmaCh01G007470 vs. NCBI nr
Match: gi|225435973|ref|XP_002271255.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera])

HSP 1 Score: 350.9 bits (899), Expect = 1.4e-93
Identity = 165/193 (85.49%), Postives = 181/193 (93.78%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DL+ RDH LMKTVL++NLEVKDNHEEAAIGARL  +LCQEIE  ESWED++DD+V  FEK
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEIEATESWEDSVDDVVSGFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]

BLAST of CmaCh01G007470 vs. NCBI nr
Match: gi|595848953|ref|XP_007209633.1| (hypothetical protein PRUPE_ppa011857mg [Prunus persica])

HSP 1 Score: 347.4 bits (890), Expect = 1.6e-92
Identity = 167/193 (86.53%), Postives = 177/193 (91.71%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VK APQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSTVKLAPQRWQDNAADGSFDVVFTFEEKVFDMVLE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLN RDH L K  LI+NLEVKDNHEEAA+GARL  +LCQEIE AESWED+IDDIV  FEK
Sbjct: 121 DLNNRDHVLKKCALIINLEVKDNHEEAAVGARLALDLCQEIEAAESWEDSIDDIVNGFEK 180

Query: 181 HQRRKLLYSISFY 194
            QRRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

[Close]

BLAST of CmaCh01G007470 vs. NCBI nr
Match: gi|694360135|ref|XP_009360042.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Pyrus x bretschneideri])

HSP 1 Score: 344.0 bits (881), Expect = 1.7e-91
Identity = 165/193 (85.49%), Postives = 177/193 (91.71%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+V+SYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVASYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN  VK APQRWQDNAADG FDVV TFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNLGVKLAPQRWQDNAADGSFDVVLTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180
           DLN RDHAL K VLI+NLEVKDNHEEAA+GARL  +LCQEIE A+SWE++IDDIV  FEK
Sbjct: 121 DLNNRDHALRKCVLIINLEVKDNHEEAAVGARLALDLCQEIEAADSWEESIDDIVSGFEK 180

Query: 181 HQRRKLLYSISFY 194
            QRRKL+YSISFY
Sbjct: 181 QQRRKLMYSISFY 193

The following BLAST results are available for this feature:

BLAST of CmaCh01G007470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSU72_MOUSE	2.7e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
SSU72_HUMAN	3.5e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]
SSU72_RAT	3.5e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg...	[more]
SSU72_BOVIN	4.6e-52	52.63	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN...	[more]
SSU72_CHICK	6.0e-52	52.63	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus...	[more]

BLAST of CmaCh01G007470 vs. TrEMBL


Match Name	E-value	Identity	Description
D7T1F4_VITVI	9.9e-94	85.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=...	[more]
M5WAQ3_PRUPE	1.1e-92	86.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1	[more]
A0A067DWF9_CITSI	3.5e-91	84.46	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029458mg PE=4 SV=1	[more]
V4SC52_9ROSI	3.5e-91	84.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005966mg PE=4 SV=1	[more]
B9RPG0_RICCO	1.0e-90	83.94	Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1	[more]

BLAST of CmaCh01G007470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73820.1	5.5e-88	78.24	Ssu72-like family protein	[more]

BLAST of CmaCh01G007470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066237\|ref\|XP_008446784.1\|	3.7e-102	96.37	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|449439211\|ref\|XP_004137380.1\|	1.1e-101	95.85	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|225435973\|ref\|XP_002271255.1\|	1.4e-93	85.49	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Viti...	[more]
gi\|595848953\|ref\|XP_007209633.1\|	1.6e-92	86.53	hypothetical protein PRUPE_ppa011857mg [Prunus persica]	[more]
gi\|694360135\|ref\|XP_009360042.1\|	1.7e-91	85.49	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006369	termination of RNA polymerase II transcription
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0008420	CTD phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G007470.1	CmaCh01G007470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 1..193 score: 1.2E
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 4..193 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G007470	Cucsa.112130	Cucumber (Gy14) v1	cgycmaB0273
CmaCh01G007470	Cla018666	Watermelon (97103) v1	cmawmB451
CmaCh01G007470	Csa1G030640	Cucumber (Chinese Long) v2	cmacuB432
CmaCh01G007470	MELO3C001923	Melon (DHL92) v3.5.1	cmameB392
CmaCh01G007470	ClCG04G012830	Watermelon (Charleston Gray)	cmawcgB405
CmaCh01G007470	CSPI01G04960	Wild cucumber (PI 183967)	cmacpiB435
CmaCh01G007470	CmoCh01G007820	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G007470	Lsi02G000110	Bottle gourd (USVL1VR-Ls)	cmalsiB410
CmaCh01G007470	Cp4.1LG02g09880	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G007470	MELO3C001923.2	Melon (DHL92) v3.6.1	cmamedB452
CmaCh01G007470	CsaV3_1G004910	Cucumber (Chinese Long) v3	cmacucB0519
CmaCh01G007470	Cla97C04G079860	Watermelon (97103) v2	cmawmbB469
CmaCh01G007470	Bhi08G001588	Wax gourd	cmawgoB0588
CmaCh01G007470	CsGy1G004810	Cucumber (Gy14) v2	cgybcmaB105
CmaCh01G007470	Carg06995	Silver-seed gourd	carcmaB0731

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G007470	Cucurbita maxima (Rimu)	cmacmaB221
CmaCh01G007470	Cucumber (Gy14) v1	cgycmaB0271
CmaCh01G007470	Wild cucumber (PI 183967)	cmacpiB431
CmaCh01G007470	Cucumber (Chinese Long) v2	cmacuB428
CmaCh01G007470	Cucurbita pepo (Zucchini)	cmacpeB484
CmaCh01G007470	Cucumber (Gy14) v2	cgybcmaB111
CmaCh01G007470	Silver-seed gourd	carcmaB0545
CmaCh01G007470	Cucumber (Chinese Long) v3	cmacucB0513