Bhi08G001588 (gene) Wax gourd

NameBhi08G001588
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRNA polymerase II subunit A C-terminal domain phosphatase SSU72
Locationchr8 : 56323499 .. 56330002 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTATCGTTATGCAATGGTTTGCTCATCCAACCAAAATCGAAGCATGGAGGCTCACTCTATACTAAAAAACAAGGGCTTCAACGTTTCATCCTATGGGACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAGCCCAATGTATACGATTTCGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCCCTAGCATTCCTCCCCCGAAAACGACCCGAAGACTGGTGGGCACTATGTTCTCGTCTTCAGCATTCTTAGTTACTTTCACGTTCTTAAATTTGTTGGAGTCTCCTCAATTGTAATTTAACCTTAAAACGTGCATAGATACAAACGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGGTTAATTTGCCTACTTCAATTTATTCTTCTAAGAGTTGATTTTTTTTTTTCTTTATTCAAGTACAACTGAGGTATGAGGATTTGAGATAATGGAACTTCTGACTTGGAGTTGATAGTACAACCTTTATCTCAGTTTATCTATGCTCATTTTAGTGCTCATGTGAAAGTTAATGGCACTGCACTCTACAATAGTAGAATCCTCGATTTACTTTCAAACATTTATTTTGAATGGCTATATATGCGTAGTGTTAAATTACGCTTATTATATTCAAAGTCTCAAAACCGATGTGTTATTGTTGGCTGCATTGGAAAGATTTGAGCTTCGTGCATTAATAATAGTATGGTAACATCTTGTCCCAAAAAAAAAAAAAAAAAAAAAAAGAAGCCATGGGTAGTAAAACACTGCTGGGAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTAATAAGTATTAATTTCCTCTTATATACAAAGTCTGAAACTGATGCGTTGTTTCTGACGGCATGGTAAGGATTTGAATTCACATGCATTAATAATAGCATGGTAATTCTTTTTTCCTAACTTTTTCTAATTATTAATAGAAGTCATGAATAATGAATTCTTGACGAATGACTTCCTGTGAGGAAATTGTACTTGTAGAGAGGAAATGGGCCAATTTAGAATCAAGGGGATAAACATTAGGTAGGAGCCTAGTGGGGGCAATTAATCTGGCGAGAAATGTTAAAAAAATTTCATATTTTATTCAAATCAGACTTTCTCCTTCATTTATGACATTTCTGATTTCACATTGGTTTAATATTGTATTAGCAATCATATATTGTATGTACTGTTAAGGATGAGAGATTTGGATTTGAACTTTGACCTAAGGAATGGAATAGGGACCTCCTCAACTCTTAAGTTATGCTCATGGTTGGCAACAAACATTTGTAGTAGGTTGAATTTTCTTAACTGTTATTAGATGTGGTTTGCAGTAGGTGTCTTCTCAAGCGGCAAGTTATGCTTATGTTGGCAACCATCATCATTAGATGTTGTAAGGTTTCTCCATTCTTTTGGCAAGGGATATACCAATTAGGTGAAGTGGAAATCCACAGAGCTCTCCTCTGTAGGGCATCATTTGTGTTTATGCAGCCATGGCTGAGTTCCCAAATGAAGAATGTTATCTTTTTTTGGATATGACAGACATCTTCCGTAGAGGTATATATAAGGAGCTGTGACCTATGAGATAGGGGGTCGCGGGATGGGAGGTTGCAGCCTAAGGATTTGGATGAGAAGGTGCCTTCTGTGTCTATCTTCCACCTCCAATAGTCTTCATGATCTGCCACTAGAAAAGGTTATGCTTGGCCATTCAACGAACTCCTCTTCATTTAAGTTTCTCCTCAAAATACAAGATCCAATAGGCATCGGTATGGTTCCCCTGGTTAGAAACAGTGCCCTCTTTCCAGAGAGATAAGATGAAAAGCCTAGGGAAAGCTTCCTTTGAAGGGAAAGAACCAATCCATAAATTGGACAAAAGATGAGTGGATTTACCATCTTCTACCACGTTGAAGATGTCGTAGATCAGCCCATGTTGCATAATGTATTTCCAAGAGGCCTTTGGCAAACCTGAGAGAAATAGTGGCCAGTTTGATGCTGAAGTGGGAAATACCATATTTTTCAACAATGCTACTCCACACAACTGTTTTTTCTATGTAGAATCTCCATATTCATTTGACTTTGTTTTTAGAGGTTAGATCCATAACCCCCGACCAAAAATGGGGACCTACACCATTCAAATTCGAGAACAGGTGGATCAATCACAGAGAATCCCTTCCCTTTGTAAAGCAGTGGTTGATTGAGAATTTCTTCCCTTTGTAGAGCAACGGTGGAGCACCGGATGAGTGGTTGGCCTGGTCATGGATTTAATCAAAAGCTCAGAGGGCTGATTGTCTCAAAGGAATGGAATCAGTCCATCTTTTGTAACAATATGTCACAGAGAACAACCCTCACAGCACTGGATCATATTGACAATGAAGGACGAGAGGTTGATAATATCGTCGCGGAGGCCCTCAATAATAGAAGAACAGAGATTAAAGAAATGCCTTTATCCATTGTTGCTGATGAAGAGATTACATGGTGTCACAAATGCAAAGCCAAATGGCTCTTGGAAGGGGATGAGAATACCACTATTTCCCACAGATATGTTGCTGCTTGAAAACGTAAAAGTGCCATAACCGAAATCCTGAACTCACAGAATGAAAAGTTTGCTCTTAGATAATGAGGTCGAGTCTGCAGACTTTTACAAGCATCTCTTCACCAAAAAACCGGGCAGAAGACTTCTCCCTCAAAATCTTGATTGGGATCCATCAAATTTTGAACAAGCCACCAGCTTAGAGACTCCTTTCCTAGAAGATGAAATTTGGATGGCAGTAAAGGCTCTAGGAACCGACAAGACCCCTGGACCGGATGGTGTCATAACAAAATTCTTTAAGAAGTCTTGGAACATTGACATTCTCAATCCCGCTAATTAGAGTGTTTCAAGATTTTTTTTTTTTTTTTTTTTTAAAAAAAATACATTGTCAATTGCAATGTGAATGAAACATATATTTGCCTTATTCCAAAGACATGGGATGCTAGAAAAGTTGAAGATTATAGACCCATTAGTCTCACCATTTGCCTCTACAAGATCATCGCCCGTGTACTTTCCGATTGTCTCAAAAAAGTCATCTTTTCAACTATCATGGATTACTAATCGGCCTTTGGGAGGTTAGACAAATTTTGGATGCTTTGATCATTGCCAGTGAGATCGTAGAACAGTGGTATAGGACGAAAACTCAAGGTGTTCTCATCAAGCTTGTTGTGGAAAAAGCTTTTGATAAAGTGGATTGGGAATACCTTGATGATATTTTGGAAGTGAAAGGATTTGGTATCAAATAGAGACTCTGGATCAAAGGTTGCATCTCATCAACCAATTTCTCCATCATCATCAAAGGTAATAGATTCAAAGCTACTAGAGGCCTTTGGCAAGAAGATCCATTGTTGCCCTTTCTATTTATTATTCTGATGGACTCCTTAAGTTATATCCTCACAAAGGCAGCTAGCATTGGCTCTGTCAAAGGCTTCTCTCTAAGACATGTCTCAAATCAACCATCTCCTATTTGCCGATAACACCATTCTTTTCTCCACCAACAAAGAAGATGACGCATCTAGGCACCAACAAAGAAGGCAGCTCATCTATTTTTTTTTCTTTTTGAGAAGGCATCGGGTCTCAATGTTAATAGACAAATTTGAATTTTCGGGCATTAATTGTGAAGATGATTGGGTGGATTTTATAGCCAGCAAGCATGACTGCAAAGGGGGAGTTTGGCCGGCCGAATATTTGGGCCTTCCGTTATATGGTAAACCATCACTATCAAACTTTTGGCAGCCTATTATTGAGAAAATTGATAAAAGACTTCACTCATGGCATCACAGCAACCTATCCAAGGGAGGTAGACTAACTTTGTTGAATGCTACTACATTATCCAACCTCCCAATCTACCATCTCTCTCTGTTTCAAGCCCTGTCTGTTGTAATTGAACAAATTTGAAAGGAGTTTTTTCCTTTGGGATGGAAATTGAGTCGCGTCAAAAAAATAGCTTACCTCTTTCATTGGGACAGACTCAAGCTTCCATTTGAAGGAGGGCTCGGCGTTGTGGACATTAGATTTCGAAGCAGACGTTTGTTAGCCAAGTGGACTTGGTGTTTTAGATAGGAAAAAAATGCCTTATGGAGAAAATTAATGAGGGCTAAGTTTGGCTCCAACACTTCGATAAAATACCAGCTTTGAAGCTCCATGTATCTTCACGAAGTCCCTAGCTCCACATTAGCAAATAGATGGACATCATTCATGGTAATATTCGATGCTCTGTTGGAAATGGACAATCCACATCCTTTTGACTCTTGACCAATGGAATGGGACCGAAGCTCTCCACAAGGTCTTTCCCAAGTTATTTTGCTGAGTCTAAAAAAGCCTTCGTTGCTGATCTTTGAAGTATTGATCACTCTTGGATGTTGAACTATAGAAGGAACTTGGAGGATGAAATTTTTGAATGGGCCTCCTTTTCTCAACTCATTCCCACTCTCAATCTCACACAGAGGGATGACATATAGATCCGGAAATTGGATATAACAGCGGCCTTTCTTCTGTCAAGTCCTTAATTTCTCACCTTGCCTCAGATACAACTTCATCCATTGAGGACCTCTACAAACAATTGTGGAAATTTCCTTGTACAAAGAGAGTCAAGTTTCTCCTTTGGGAAATAATCGACTCCTGCTGTAACACGTTGGATAGGGTAAAAAATGATGTCCTTGGCTTCATTGTTTTCCCTCATGATTCTGCCTTTGCAAAGTGGATAAGGAATCCCAAAATCACATCTTCTTCCATTGTTTATTTACTGCTGGAATCTGGGCTGATTTGTTTGATGCTTTTGGTTGGCAAATTATTGCTCCTTTGGACATTAATGCCTGGTTCAGAGAGTTGTTCGTTGATCACTCTTTTACGACAACACAAGGGCATCTATGAACTAGTATAATCAGAGCCACCCTTGGGGAGAGGGAAATTCAAGGGTTTTTAAGGAAAAGAAAGATCCCCTGGGATGTTTATGAATCATCTAGTTTCAATGCTCTTTTTTGATGTAAAAGTATACAACCCCTCAATAGTTTCAACTTAAATTTCCTTGTATCTAATTGGAGGAATTTTTCATAATCCTGCTAGTTCTCCTTTTAAAACTTTAGATATTTCATTCATCTATTAAATTATTTCTTAATCTTTATATTTTTCGAGAAAAAAAAAAAAAAAAAAAAAAAACTTGCGTGTCATATTTCATTTTACATTGTAAATTTAGTAATTTGTTTGTCTTTGAAACTAGAGTGGCTAGCATTAGTTTTGACGACATTGTATTATTCTTCCAATTTTTTTATGGTTTTGTAGAAAGAAACTTCAAATATTTTCTGCTATTGATTTATGACTATGTTCTAGTTGTCGATTTTTGAATTGATTGATAAGATGGATGCGATTAGGCACACTTGATGGTGGAGTTGGAATATGAAACAAATTATCTGAGAGTGTGTTTTCTTTTCAGGTGGTTTATCCGGCTTTTAAGAGTAATGCTGTTGATTCTTTTTATTATTTTATTTATGGATTTTGTTTTAAGGAAGTTTTTGCTAGCCACCTATTGTTTTGAAAAGAGCTAGCTTTTGTAAGTTCAGTAATGGATTCCATAGTTAGGTTGGGATTTGTTGTCAACATGACATGTCTTTGGTTTGGTAGAGGTAACTTGAGGTGGGGTGTGACATTTTCCTTAAAAGAGACCCATACCTAGGCCTTCTCTACATGTGAGGAATGATGTGACCTTCCAATTTACAAGAATGTTGCCGCTCTCTCTAGAGGCTCCTCTCCAAAAGAAAACTCACATGGATCTCTCCAAACTCTTTATAACCTTTCAAGATGCTCGAATATTCGAAGGTAATAGATTGGGATGTCAGAGAGAACCACGTTTGAGTGTGAATCTCTCACCTCGAGAACATAAAAAATAAAATAAAACAAAATAAAAACCAATGCTTTTATTTGCTCTTGTCAAGATTTATCCCGAAATAGTAGTTCTCTGCCTGTTGATTTTGAGCCTTGAAACTAGCTCAAAGATCTCCAAATCCTAAGAACAATAAGGTGTTGAGTGAATTGTTGCGTTGAGTGAATTGTTGATGACTTGTACGTTTTCTTGCAACATAAGCTTGTGTTGGTGTTCATTGTGTGTTCATGTTCCTGCATACTTCTGATATTACTCATTTATCAAGTGGGCTGGTTTCTGCTCAACTGTCTGATGACAATTATGCAATAATTGAGCAGATTTGAACACCCGTGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTATTTTTGATCTTTGCCAGGAG

mRNA sequence

ATGAAGTATCGTTATGCAATGGTTTGCTCATCCAACCAAAATCGAAGCATGGAGGCTCACTCTATACTAAAAAACAAGGGCTTCAACGTTTCATCCTATGGGACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAGCCCAATGTATACGATTTCGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTATACAAACGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATTTGAACACCCGTGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTATTTTTGATCTTTGCCAGGAG

Coding sequence (CDS)

ATGAAGTATCGTTATGCAATGGTTTGCTCATCCAACCAAAATCGAAGCATGGAGGCTCACTCTATACTAAAAAACAAGGGCTTCAACGTTTCATCCTATGGGACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGGGAGCCCAATGTATACGATTTCGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTATACAAACGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGACGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATTTGAACACCCGTGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTATTTTTGATCTTTGCCAGGAG

Protein sequence

MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE
BLAST of Bhi08G001588 vs. Swiss-Prot
Match: sp|Q6PC19|SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio OX=7955 GN=ssu72 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-46
Identity = 88/156 (56.41%), Postives = 120/156 (76.92%), Query Frame = 0

Query: 4   RYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN
Sbjct: 67  DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQ 160
           +R+    + V ++N++++DNHEEA +GA LI +LCQ
Sbjct: 127 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQ 160

BLAST of Bhi08G001588 vs. Swiss-Prot
Match: sp|Q9CY97|SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus OX=10090 GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-46
Identity = 91/156 (58.33%), Postives = 119/156 (76.28%), Query Frame = 0

Query: 4   RYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQ 160
           +R+    + V +VN++++DNHEEA +GA LI +LCQ
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

BLAST of Bhi08G001588 vs. Swiss-Prot
Match: sp|Q9NP77|SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens OX=9606 GN=SSU72 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-46
Identity = 91/156 (58.33%), Postives = 119/156 (76.28%), Query Frame = 0

Query: 4   RYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQ 160
           +R+    + V +VN++++DNHEEA +GA LI +LCQ
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

BLAST of Bhi08G001588 vs. Swiss-Prot
Match: sp|Q4KLK9|SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus OX=10116 GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-46
Identity = 91/156 (58.33%), Postives = 119/156 (76.28%), Query Frame = 0

Query: 4   RYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQ 160
           +R+    + V +VN++++DNHEEA +GA LI +LCQ
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

BLAST of Bhi08G001588 vs. Swiss-Prot
Match: sp|Q17QI2|SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX=9913 GN=SSU72 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-46
Identity = 90/156 (57.69%), Postives = 119/156 (76.28%), Query Frame = 0

Query: 4   RYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQ 160
           +R+    + V ++N++++DNHEEA +GA LI +LCQ
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160

BLAST of Bhi08G001588 vs. TAIR10
Match: AT1G73820.1 (Ssu72-like family protein)

HSP 1 Score: 271.9 bits (694), Expect = 2.4e-73
Identity = 126/160 (78.75%), Postives = 144/160 (90.00%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLN R+ +L KT+L++NLEVKDNHEEAAIG RL  +LCQE
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQE 160

BLAST of Bhi08G001588 vs. TrEMBL
Match: tr|A0A1S3BFX9|A0A1S3BFX9_CUCME (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cucumis melo OX=3656 GN=LOC103489144 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 6.8e-86
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARL FDLCQE
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 160

BLAST of Bhi08G001588 vs. TrEMBL
Match: tr|A0A2P5FAG2|A0A2P5FAG2_9ROSA (RNA polymerase II subunit A OS=Trema orientalis OX=63057 GN=TorRG33x02_092930 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.5e-80
Identity = 144/160 (90.00%), Postives = 155/160 (96.88%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 21  MKYRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 80

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VKTAPQRWQDNAADG+FDVVFTFEEKVFDMVIE
Sbjct: 81  MFDDLRRKDPELYKRNGILPMLKRNSTVKTAPQRWQDNAADGTFDVVFTFEEKVFDMVIE 140

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DL+TR+H LMK+VL++NLEVKDNHEEAA+GARL  DLCQE
Sbjct: 141 DLHTREHVLMKSVLVINLEVKDNHEEAAVGARLALDLCQE 180

BLAST of Bhi08G001588 vs. TrEMBL
Match: tr|D7T1F4|D7T1F4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.8e-79
Identity = 142/160 (88.75%), Postives = 154/160 (96.25%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DL+ RDH LMKTVL++NLEVKDNHEEAAIGARL  DLCQE
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQE 160

BLAST of Bhi08G001588 vs. TrEMBL
Match: tr|A0A2N9GAG4|A0A2N9GAG4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24026 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 6.2e-79
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+AVK APQRWQ+NAADGSFDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSAVKLAPQRWQENAADGSFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DL+ RDH LMKTVL++NLEVKDNHEEAAIGARL  DLCQE
Sbjct: 121 DLHNRDHTLMKTVLVINLEVKDNHEEAAIGARLTLDLCQE 160

BLAST of Bhi08G001588 vs. TrEMBL
Match: tr|M5WAQ3|M5WAQ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G237600 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.5e-77
Identity = 141/160 (88.12%), Postives = 149/160 (93.12%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VK APQRWQDNAADGSFDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSTVKLAPQRWQDNAADGSFDVVFTFEEKVFDMVLE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLN RDH L K  LI+NLEVKDNHEEAA+GARL  DLCQE
Sbjct: 121 DLNNRDHVLKKCALIINLEVKDNHEEAAVGARLALDLCQE 160

BLAST of Bhi08G001588 vs. NCBI nr
Match: XP_008446784.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 325.5 bits (833), Expect = 1.0e-85
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARL FDLCQE
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 160

BLAST of Bhi08G001588 vs. NCBI nr
Match: XP_004137380.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.8e-85
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARL FDLCQE
Sbjct: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 160

BLAST of Bhi08G001588 vs. NCBI nr
Match: XP_022948646.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_022948647.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_023523675.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo] >XP_023523676.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.6 bits (823), Expect = 1.5e-84
Identity = 156/160 (97.50%), Postives = 157/160 (98.12%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARL FDLCQE
Sbjct: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 160

BLAST of Bhi08G001588 vs. NCBI nr
Match: XP_022997876.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima] >XP_022997877.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima])

HSP 1 Score: 321.2 bits (822), Expect = 1.9e-84
Identity = 156/160 (97.50%), Postives = 158/160 (98.75%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARL F+LCQE
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQE 160

BLAST of Bhi08G001588 vs. NCBI nr
Match: XP_022137335.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Momordica charantia])

HSP 1 Score: 320.9 bits (821), Expect = 2.5e-84
Identity = 155/160 (96.88%), Postives = 157/160 (98.12%), Query Frame = 0

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKNKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNA VKTAPQRWQDNAADGSFDVVF+FEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNATVKTAPQRWQDNAADGSFDVVFSFEEKVFDMVIE 120

Query: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLIFDLCQE 161
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARL FDLCQE
Sbjct: 121 DLNTRDHGLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQE 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q6PC19|SSU72_DANRE1.9e-4656.41RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio O... [more]
sp|Q9CY97|SSU72_MOUSE1.9e-4658.33RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ... [more]
sp|Q9NP77|SSU72_HUMAN2.4e-4658.33RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ... [more]
sp|Q4KLK9|SSU72_RAT2.4e-4658.33RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg... [more]
sp|Q17QI2|SSU72_BOVIN3.2e-4657.69RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX... [more]
Match NameE-valueIdentityDescription
AT1G73820.12.4e-7378.75Ssu72-like family protein[more]
Match NameE-valueIdentityDescription
tr|A0A1S3BFX9|A0A1S3BFX9_CUCME6.8e-8698.75RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cucumis melo ... [more]
tr|A0A2P5FAG2|A0A2P5FAG2_9ROSA2.5e-8090.00RNA polymerase II subunit A OS=Trema orientalis OX=63057 GN=TorRG33x02_092930 PE... [more]
tr|D7T1F4|D7T1F4_VITVI2.8e-7988.75Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g01900 PE=4 SV=... [more]
tr|A0A2N9GAG4|A0A2N9GAG4_FAGSY6.2e-7989.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24026 PE=4 SV=1[more]
tr|M5WAQ3|M5WAQ3_PRUPE1.5e-7788.13Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G237600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_008446784.11.0e-8598.75PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu... [more]
XP_004137380.11.8e-8598.13PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu... [more]
XP_022948646.11.5e-8497.50RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita mosch... [more]
XP_022997876.11.9e-8497.50RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxim... [more]
XP_022137335.12.5e-8496.88RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Momordica chara... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0006369 termination of RNA polymerase II transcription
biological_process GO:0006397 mRNA processing
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0042967 acyl-carrier-protein biosynthetic process
cellular_component GO:0005847 mRNA cleavage and polyadenylation specificity factor complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
molecular_function GO:0008420 CTD phosphatase activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008080 N-acetyltransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001588Bhi08M001588mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.2300coord: 75..160
e-value: 3.8E-26
score: 93.4
coord: 1..74
e-value: 2.3E-16
score: 61.8
NoneNo IPR availablePANTHERPTHR20383:SF9RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72coord: 1..159
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 4..159
e-value: 4.6E-72
score: 241.5
IPR006811RNA polymerase II subunit APANTHERPTHR20383FAMILY NOT NAMEDcoord: 1..159