Cla018666 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018666
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RNA polymerase II subunit a c-terminal domain phosphatase ssu72 (AHRD V1 ***- E3TDP5_ICTPU); contains Interpro domain(s) IPR006811 RNA polymerase II subunit A
Location	Chr4 : 24184075 .. 24184548 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCTCTATCATTCCTCCCCCGAAAACGACCCGAAGACTGGTGGGTACTATTTTATCGTCTTCAGCATTCTTAGTAACTTTCACTTTCTTAAATTTGTTGGATTCTCCTCAATTATAATTTAACCTTAAAACGTGCATAGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGGTTAA

mRNA sequence

ATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCTCTATCATTCCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGGTTAA

Coding sequence (CDS)

ATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCTCTATCATTCCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGGTTAA

Protein sequence

MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEG

Homology

[Close]

BLAST of Cla018666 vs. Swiss-Prot
Match: SSU72_DEBHA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SSU72 PE=3 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-24
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           ME+H  LK  G+NV S+GTG+ V+LPGPS+ +PNVY+FGTPY  ++ DL  ++       
Sbjct: 20  MESHKQLKDAGYNVRSFGTGSAVRLPGPSVDKPNVYEFGTPYDDIYRDLTSQE------- 79

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
              YH           Y+ NG++ M+ RN  +K AP++W +NA+ G FD+V T EE+ FD
Sbjct: 80  ---YHKM---------YESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFD 124

Query: 121 MVIE 125
           +V++
Sbjct: 140 LVLD 124

[Close]

BLAST of Cla018666 vs. Swiss-Prot
Match: SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23
Identity = 58/124 (46.77%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++DL RKD EL    
Sbjct: 20  MEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYNDLVRKDKEL---- 79

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           Y +NGIL ML RN  +K+ P+R+Q  +    FD+V T EE+V+D
Sbjct: 80  ----------------YTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYD 121

Query: 121 MVIE 125
            V+E
Sbjct: 140 QVLE 121

[Close]

BLAST of Cla018666 vs. Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 60/124 (48.39%), Postives = 76/124 (61.29%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL    
Sbjct: 20  MEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKEL---- 79

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           Y +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D
Sbjct: 80  ----------------YTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYD 121

Query: 121 MVIE 125
            V+E
Sbjct: 140 QVVE 121

[Close]

BLAST of Cla018666 vs. Swiss-Prot
Match: SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 60/124 (48.39%), Postives = 76/124 (61.29%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL    
Sbjct: 20  MEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKEL---- 79

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           Y +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D
Sbjct: 80  ----------------YTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYD 121

Query: 121 MVIE 125
            V+E
Sbjct: 140 QVVE 121

[Close]

BLAST of Cla018666 vs. Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 60/124 (48.39%), Postives = 76/124 (61.29%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL    
Sbjct: 20  MEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKEL---- 79

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           Y +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D
Sbjct: 80  ----------------YTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYD 121

Query: 121 MVIE 125
            V+E
Sbjct: 140 QVVE 121

[Close]

BLAST of Cla018666 vs. TrEMBL
Match: A0A0A0LQ65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030640 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.7e-51
Identity = 105/125 (84.00%), Postives = 105/125 (84.00%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL    
Sbjct: 17  MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL---- 76

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD
Sbjct: 77  ----------------YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 121

Query: 121 MVIEG 126
           MVIEG
Sbjct: 137 MVIEG 121

[Close]

BLAST of Cla018666 vs. TrEMBL
Match: W9RXL1_9ROSA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Morus notabilis GN=L484_021452 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-46
Identity = 97/125 (77.60%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKHM DDLRRKD EL    
Sbjct: 18  MEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMLDDLRRKDLEL---- 77

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRN++VKTAPQRWQDNAADGSFDVVFTFEEKVFD
Sbjct: 78  ----------------YKRNGILPMLKRNSSVKTAPQRWQDNAADGSFDVVFTFEEKVFD 122

Query: 121 MVIEG 126
           MVIEG
Sbjct: 138 MVIEG 122

[Close]

BLAST of Cla018666 vs. TrEMBL
Match: D7T1F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.9e-46
Identity = 94/124 (75.81%), Postives = 102/124 (82.26%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKHMFDDLRRKDP+L    
Sbjct: 17  MEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKHMFDDLRRKDPDL---- 76

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFD
Sbjct: 77  ----------------YKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFD 120

Query: 121 MVIE 125
           MV+E
Sbjct: 137 MVVE 120

[Close]

BLAST of Cla018666 vs. TrEMBL
Match: A0A0D2SB45_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-46
Identity = 94/125 (75.20%), Postives = 101/125 (80.80%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKHMFDDLRRKDPEL    
Sbjct: 17  MEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKHMFDDLRRKDPEL---- 76

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRN +VK APQRWQDNAADG FD+VFTFEEKVFD
Sbjct: 77  ----------------YKRNGILPMLKRNLSVKLAPQRWQDNAADGCFDIVFTFEEKVFD 121

Query: 121 MVIEG 126
           MV+EG
Sbjct: 137 MVLEG 121

[Close]

BLAST of Cla018666 vs. TrEMBL
Match: A0A067KU90_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10807 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.5e-46
Identity = 93/125 (74.40%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHS+LK +GF+V+SYGTGAHVKLPGPSLREPNVYDFGTPYK MFDDLRRKDP+L    
Sbjct: 11  MEAHSLLKRQGFDVASYGTGAHVKLPGPSLREPNVYDFGTPYKQMFDDLRRKDPDL---- 70

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRN++VK APQRWQDNAADGSFD+VFTFEEKVFD
Sbjct: 71  ----------------YKRNGILPMLKRNSSVKLAPQRWQDNAADGSFDIVFTFEEKVFD 115

Query: 121 MVIEG 126
           MV+EG
Sbjct: 131 MVVEG 115

[Close]

BLAST of Cla018666 vs. NCBI nr
Match: gi|700208842|gb|KGN63938.1| (hypothetical protein Csa_1G030640 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 9.6e-51
Identity = 105/125 (84.00%), Postives = 105/125 (84.00%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL    
Sbjct: 17  MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL---- 76

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD
Sbjct: 77  ----------------YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 121

Query: 121 MVIEG 126
           MVIEG
Sbjct: 137 MVIEG 121

[Close]

BLAST of Cla018666 vs. NCBI nr
Match: gi|449439211|ref|XP_004137380.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 4.8e-50
Identity = 104/124 (83.87%), Postives = 104/124 (83.87%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL    
Sbjct: 17  MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL---- 76

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD
Sbjct: 77  ----------------YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120

Query: 121 MVIE 125
           MVIE
Sbjct: 137 MVIE 120

[Close]

BLAST of Cla018666 vs. NCBI nr
Match: gi|659066237|ref|XP_008446784.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 4.8e-50
Identity = 104/124 (83.87%), Postives = 104/124 (83.87%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL    
Sbjct: 17  MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL---- 76

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD
Sbjct: 77  ----------------YKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120

Query: 121 MVIE 125
           MVIE
Sbjct: 137 MVIE 120

[Close]

BLAST of Cla018666 vs. NCBI nr
Match: gi|703130957|ref|XP_010104762.1| (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Morus notabilis])

HSP 1 Score: 193.4 bits (490), Expect = 2.4e-46
Identity = 97/125 (77.60%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKHM DDLRRKD EL    
Sbjct: 18  MEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMLDDLRRKDLEL---- 77

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRN++VKTAPQRWQDNAADGSFDVVFTFEEKVFD
Sbjct: 78  ----------------YKRNGILPMLKRNSSVKTAPQRWQDNAADGSFDVVFTFEEKVFD 122

Query: 121 MVIEG 126
           MVIEG
Sbjct: 138 MVIEG 122

[Close]

BLAST of Cla018666 vs. NCBI nr
Match: gi|225435973|ref|XP_002271255.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera])

HSP 1 Score: 192.6 bits (488), Expect = 4.2e-46
Identity = 94/124 (75.81%), Postives = 102/124 (82.26%), Query Frame = 1


Query: 1   MEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFS 60
           MEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKHMFDDLRRKDP+L    
Sbjct: 17  MEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKHMFDDLRRKDPDL---- 76

Query: 61  PPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFD 120
                           YKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFD
Sbjct: 77  ----------------YKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFD 120

Query: 121 MVIE 125
           MV+E
Sbjct: 137 MVVE 120

The following BLAST results are available for this feature:

BLAST of Cla018666 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSU72_DEBHA	5.9e-24	42.74	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Debaryomyces ...	[more]
SSU72_DANRE	1.0e-23	46.77	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio G...	[more]
SSU72_MOUSE	1.3e-23	48.39	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
SSU72_BOVIN	1.7e-23	48.39	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN...	[more]
SSU72_CHICK	1.7e-23	48.39	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus...	[more]

BLAST of Cla018666 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ65_CUCSA	6.7e-51	84.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030640 PE=4 SV=1	[more]
W9RXL1_9ROSA	1.7e-46	77.60	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Morus notabil...	[more]
D7T1F4_VITVI	2.9e-46	75.81	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=...	[more]
A0A0D2SB45_GOSRA	3.8e-46	75.20	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1	[more]
A0A067KU90_JATCU	8.5e-46	74.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10807 PE=4 SV=1	[more]

BLAST of Cla018666 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208842\|gb\|KGN63938.1\|	9.6e-51	84.00	hypothetical protein Csa_1G030640 [Cucumis sativus]	[more]
gi\|449439211\|ref\|XP_004137380.1\|	4.8e-50	83.87	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|659066237\|ref\|XP_008446784.1\|	4.8e-50	83.87	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|703130957\|ref\|XP_010104762.1\|	2.4e-46	77.60	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Morus notabilis...	[more]
gi\|225435973\|ref\|XP_002271255.1\|	4.2e-46	75.81	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Viti...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006369	termination of RNA polymerase II transcription
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0008420	CTD phosphatase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17112	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018666	Cla018666.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU17112	WMU17112	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 77..124 score: 2.0E-62coord: 1..56 score: 2.0
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 76..124 score: 1.3E-16coord: 1..57 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018666	Cla97C04G079860	Watermelon (97103) v2	wmwmbB291
Cla018666	Csa1G030640	Cucumber (Chinese Long) v2	cuwmB062
Cla018666	MELO3C001923	Melon (DHL92) v3.5.1	mewmB174
Cla018666	ClCG04G012830	Watermelon (Charleston Gray)	wcgwmB255
Cla018666	CSPI01G04960	Wild cucumber (PI 183967)	cpiwmB064
Cla018666	Cucsa.112130	Cucumber (Gy14) v1	cgywmB162
Cla018666	CmaCh01G007470	Cucurbita maxima (Rimu)	cmawmB451
Cla018666	Lsi02G000110	Bottle gourd (USVL1VR-Ls)	lsiwmB212
Cla018666	Cp4.1LG02g09880	Cucurbita pepo (Zucchini)	cpewmB578
Cla018666	CsGy1G004810	Cucumber (Gy14) v2	cgybwmB062
Cla018666	MELO3C001923.2	Melon (DHL92) v3.6.1	medwmB170
Cla018666	Carg06995	Silver-seed gourd	carwmB0519
Cla018666	CsaV3_1G004910	Cucumber (Chinese Long) v3	cucwmB068
Cla018666	Bhi08G001588	Wax gourd	wgowmB519

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018666	Cucumber (Gy14) v1	cgywmB163
Cla018666	Cucurbita maxima (Rimu)	cmawmB207
Cla018666	Cucurbita moschata (Rifu)	cmowmB446
Cla018666	Cucumber (Chinese Long) v2	cuwmB060