CSPI01G04960 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G04960
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Location	Chr1 : 3216146 .. 3217076 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTAAAGAGCCTTGGGCATCCATTTAACAAAGATTTCGAGAACATATTTGTAGGACGTGACAACCAGCTCAGCTCAATAGCTGAATTAAGGGTGAAATAACTTTCTTGTCAGAATTAATATTTGCCATTTACCTTAGTTTCCCTTACTAGTAGCGCAGCGGAGTGTTCCAAATTGTATCTTGGTGGCTACTCCCCTATTACTCGTACCAACATCGAAAATTCACCATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTGTATCCTTTTTCTCCCCCAAAAACGACTCGAAGACTGGTGGGTACTATTTTTTCGTCTTTAGCGTTCTTAGTAACTTTCACTTTCTTAAATTTGTTGGATTCTCCTCTATTATAATTCAACCTTAAAACGTACATAGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGGTTAAGTTGCCTACTTCTTCAATTTATGCTAGTGAGAGTTATGCCCGTTTATCCATGCTCATTTTGGTGCTCTTGTGAAAGTTAATGGCACTGTACAATAGTAGAACTAGAACCCGTGTGATGATATTACAGCGATTTACTTTCAAGCATTTATTTTGAATGCCTATGCTTAGTGTTAAATTACTCTTATAGTTATATCCAAAGTCT

mRNA sequence

ATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGGTTAA

Coding sequence (CDS)

ATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGGTTAA

Homology

[Close]

BLAST of CSPI01G04960 vs. Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 4  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
          R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7  RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64 DLRRKDPELY 74
          DL RKD ELY
Sbjct: 67 DLLRKDKELY 76

[Close]

BLAST of CSPI01G04960 vs. Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 4  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
          R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7  RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64 DLRRKDPELY 74
          DL RKD ELY
Sbjct: 67 DLLRKDKELY 76

[Close]

BLAST of CSPI01G04960 vs. Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 4  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
          R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7  RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64 DLRRKDPELY 74
          DL RKD ELY
Sbjct: 67 DLLRKDKELY 76

[Close]

BLAST of CSPI01G04960 vs. Swiss-Prot
Match: SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-22
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 4  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
          R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++
Sbjct: 7  RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66

Query: 64 DLRRKDPELY 74
          DL RKD ELY
Sbjct: 67 DLVRKDKELY 76

[Close]

BLAST of CSPI01G04960 vs. Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 4  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
          R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7  RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64 DLRRKDPELY 74
          DL RKD ELY
Sbjct: 67 DLLRKDKELY 76

[Close]

BLAST of CSPI01G04960 vs. TrEMBL
Match: A0A0A0LQ65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030640 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. TrEMBL
Match: A0A0D2SB45_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-33
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1  MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. TrEMBL
Match: A0A0B0NIE4_GOSAR (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gossypium arboreum GN=F383_13107 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-33
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1  MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. TrEMBL
Match: A0A0D2TXV2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-33
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1  MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. TrEMBL
Match: A0A0D2TUD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.8e-33
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1  MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. TAIR10
Match: AT1G73820.1 (AT1G73820.1 Ssu72-like family protein)

HSP 1 Score: 137.5 bits (345), Expect = 4.0e-33
Identity = 61/73 (83.56%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1  MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61 MFDDLRRKDPELY 74
          MFD+LRRKDPELY
Sbjct: 61 MFDELRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. NCBI nr
Match: gi|449439211|ref|XP_004137380.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. NCBI nr
Match: gi|700208842|gb|KGN63938.1| (hypothetical protein Csa_1G030640 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. NCBI nr
Match: gi|659066237|ref|XP_008446784.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. NCBI nr
Match: gi|763793462|gb|KJB60458.1| (hypothetical protein B456_009G305700 [Gossypium raimondii])

HSP 1 Score: 147.9 bits (372), Expect = 8.3e-33
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1  MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

[Close]

BLAST of CSPI01G04960 vs. NCBI nr
Match: gi|823229615|ref|XP_012447548.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Gossypium raimondii])

HSP 1 Score: 147.9 bits (372), Expect = 8.3e-33
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
          MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1  MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61 MFDDLRRKDPELY 74
          MFDDLRRKDPELY
Sbjct: 61 MFDDLRRKDPELY 73

The following BLAST results are available for this feature:

BLAST of CSPI01G04960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSU72_CHICK	6.6e-22	68.57	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus...	[more]
SSU72_RAT	6.6e-22	68.57	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg...	[more]
SSU72_MOUSE	6.6e-22	68.57	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
SSU72_DANRE	6.6e-22	67.14	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio G...	[more]
SSU72_HUMAN	6.6e-22	68.57	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]

BLAST of CSPI01G04960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ65_CUCSA	1.2e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030640 PE=4 SV=1	[more]
A0A0D2SB45_GOSRA	5.8e-33	91.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1	[more]
A0A0B0NIE4_GOSAR	5.8e-33	91.78	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gossypium arb...	[more]
A0A0D2TXV2_GOSRA	5.8e-33	91.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1	[more]
A0A0D2TUD6_GOSRA	5.8e-33	91.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G305700 PE=4 SV=1	[more]

BLAST of CSPI01G04960 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73820.1	4.0e-33	83.56	Ssu72-like family protein	[more]

BLAST of CSPI01G04960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439211\|ref\|XP_004137380.1\|	1.8e-35	100.00	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|700208842\|gb\|KGN63938.1\|	1.8e-35	100.00	hypothetical protein Csa_1G030640 [Cucumis sativus]	[more]
gi\|659066237\|ref\|XP_008446784.1\|	1.8e-35	100.00	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|763793462\|gb\|KJB60458.1\|	8.3e-33	91.78	hypothetical protein B456_009G305700 [Gossypium raimondii]	[more]
gi\|823229615\|ref\|XP_012447548.1\|	8.3e-33	91.78	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Goss...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA
IPR023485	Ptyr_pPase
IPR006811	RNA_pol_II_suA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006369	termination of RNA polymerase II transcription
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0008420	CTD phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G04960.2	CSPI01G04960.2	mRNA
CSPI01G04960.1	CSPI01G04960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 1..120 score: 1.8
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 4..120 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G04960	Cla018666	Watermelon (97103) v1	cpiwmB064
CSPI01G04960	Csa1G030640	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G04960	MELO3C001923	Melon (DHL92) v3.5.1	cpimeB019
CSPI01G04960	ClCG04G012830	Watermelon (Charleston Gray)	cpiwcgB059
CSPI01G04960	Lsi02G000110	Bottle gourd (USVL1VR-Ls)	cpilsiB037
CSPI01G04960	MELO3C001923.2	Melon (DHL92) v3.6.1	cpimedB018
CSPI01G04960	CsaV3_1G004910	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G04960	Cla97C04G079860	Watermelon (97103) v2	cpiwmbB053
CSPI01G04960	Bhi08G001588	Wax gourd	cpiwgoB057
CSPI01G04960	Cucsa.112130	Cucumber (Gy14) v1	cgycpiB137
CSPI01G04960	CmaCh01G007470	Cucurbita maxima (Rimu)	cmacpiB435
CSPI01G04960	Cp4.1LG02g09880	Cucurbita pepo (Zucchini)	cpecpiB533
CSPI01G04960	CsGy1G004810	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G04960	Carg06995	Silver-seed gourd	carcpiB0553

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G04960	Silver-seed gourd	carcpiB0556
CSPI01G04960	Watermelon (97103) v2	cpiwmbB055
CSPI01G04960	Wax gourd	cpiwgoB034
CSPI01G04960	Cucurbita maxima (Rimu)	cmacpiB216
CSPI01G04960	Cucurbita maxima (Rimu)	cmacpiB431
CSPI01G04960	Cucurbita moschata (Rifu)	cmocpiB202
CSPI01G04960	Cucurbita moschata (Rifu)	cmocpiB421
CSPI01G04960	Cucurbita moschata (Rifu)	cmocpiB426
CSPI01G04960	Watermelon (Charleston Gray)	cpiwcgB057
CSPI01G04960	Cucurbita pepo (Zucchini)	cpecpiB535