CsaV3_1G004910 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004910
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA polymerase II subunit A C-terminal domain phosphatase SSU72
Locationchr1 : 3228130 .. 3235437 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATCTCTTATCTTAAGCTCAACCTATGTCTTAAACAATCAAGAAACTTTGAAGCACTCTCTCATGTGGATAGAGTTCATGACTAACCAAATGTGTGACACTTGAACTATCTAGTTGTGAAAGAAGCCAAGTAAGCATTTACGGCAAAATGGTTAGTGCACAAAGCACTCTAGATTCATGAATAAGTAGGCAAGTAGACAAGAGTGAGAGTTTTAATGAATGAGAGCTTGGGGCAATCTCCCAACCTCGAGACTGTTGCAACTTTTGTGAGATGTTTACAAATGATCCCTTTTGATGTATTTATACACAAGCATGGTCAACTTTGGCATTGGTTAGGTAGGCTATAGGCTCTTCAAGAGCCTCCATGGTATCTTAGCCCTTACAAGTATTACCTAGAACATTCTAGACACTCCTAGCACATTTCGGACCTTGACCGTCATCAAAAGTCATTGCCTTGTCTAACATTCTCTAGCATCTATTTGGACACACTTGTAGAACTTAGCTGTCTTTGATGGGCACACACCTAGGTGTGTGTCTTAGCTACACATGGTATATATGGGCTGCCAATGGGGCTTACTAGACTCCTCTTTGGCTTTGCTAAAGAGCCTTGGGCATCCATTTAACAAAGATTTCGAGAACATATTTGTAGGACGTTATGACAACCAGCTCAGCTCAATAGCTGAATTAAGGGTGAAATAACTTTCTTGTCAGAATTAATATTTGCCATTTACCTTAGTTTCCCTTACTAGTAGCGCAGCGGAGTGTTCCAAATTGTATCTTGGTGGCTACTCCCCTATTACTCGTAGCAACATCGAAAATTCACCATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTGTATCCTTTTTCTCCCCCAAAAACGACTCGAAGACTGGTGGGTACTATTTTTTCGTCTTTAGCGTTCTTAGTAACTTTCACTTTCTTAAATTTGTTGGATTCTCCTCTATTATAATTCAACCTTAAAACGTACATAGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGGTTAAGTTGCCTACTTCTTCAATTTATGCTAGTGAGAGTTATGCCCGTTTATCCATGCTCATTTTGGTGCTCTTGTGAAAGTTAATGGCACTGTACAATAGTAGAACTAGAACCCGTGTGATGATATTACAGCGATTTACTTTCAAGCATTTATTTTGAATGGCTATGCTTAGTGTTAAATTACTCTTATAGTTATATCCAAAGTCTTAAACTGATGGTGTCGTTGTTGGCTGCATTGCAAATTTTGAGCTTCGTGCATTAATAATACTATGGTAACATATCCTCCCCCCCAAAGAAATTGCATGGTGATTTATTTTATAATTTTTTCTATTTATTAATTGGAAGTCATGAATGGACGAATCCTTGATGAAAGACTTCCTGTGAGGAAATTTTATTTGTAGAGAGGAAATGCCCAGTTTAAAATCAAGGGGGTATACATTAGGTAGGAATAGAACTCCTCAACTGTTAAGTTATGCTCTTGTTGGCAACAAACACAAATAGTAATTCGAATTTTTTCAACTGTTATTAGCTGTCATTTGCAATAGGTGCCTTCTCAACTGGTAAGTTATTCTCATGTTGGCAATTACCACTGTTTGATGTTATAAGGTTTTTCCATTCTTTCGACAAAGGATATACCTATTAGGTTAAGTGGAAATCCACAAAGGCTCTCCTCTGTGGGGATCATTGGTGTTTATGCAGCCATGCCTGAGTTCGCAAATGAAGAATTTTATCTCTTTTTTGGATAAGATATCCTCCGTAGAGGTATGCATAAGGACCTGTTACCTGTGAGATAGGGGGCCGGGAGATGGGAGGTTGCACACGAAGGATTCAGATGAGAAGGTGCCTTCTGTCTCTTTCTTCCACTTCCAATAGTCTTCTTAAACTGCCACTAGGAAAGTATATGCTTGGCAAGTCAACAAACTGCTCTTCTTTTAAGTTTCTCCTCAGAACACAAGATCCAACAGGCATCACTACGGTTCCCATGGTTAGAAATAGTGCCTTCTTTCCTGAAAAATAAGAAGAAAAGCCTAGGAGAGGTTCCCTTGAAGGGGAAGATCCAATCCATAAATTGGACAAAAAGCTAGTGGATTTACCATCGTCTACCACGTTGAAAATATTGCTATAAATCAGCCCTTTTCGTAACAATGTATTTTCAAGGGCCTTTGGCAAAACTGAGAGAAATAGTGGCTGGTTTAAGGCTGAGGTGGAAAGTGCCATATTTTTCAGCAACAATACTTCTCCATGCAACTGTTTTTTCTATGTAGAATCTCCAAATTCATTTGGCTTTGTGTTTAGGGGTTAGATCCATAATCCCCAACCAAAAATGGAGACCTACACTGTTCAAATTGGAGAACAGGTGGTCCAATTACAGAGGATTCCTTCCCTTCGTAGAGTAATGGTACAATATAGTAGAAGAAAGAAGAGAGATAGTGCACGTGTTATTGAGGGTGAGGGCACACTACGTGATTAGTGTAGGGGAAGTTACAGTTAGTTAGAAGATAGGAGCGGTTAAGTAGGAAGGGAGTGGGAAAGGGAAAGGGGCAATCAGTTTGTGGGTAGTTTTTCTGCACTCTTCCTTGAGAGAGAGGATAGGCAGGAGGGTAATGTTTTTAACTTTGTGTTCTTAGTTTTCTGTATGTTTGAATCCAGAATTGTTTGTTCAACAATTCTACTTTGTAATTTTTGAAGTGTTTTTAATCAAATTAGAAAACAACTACTTGGTGTTCTATCACCTTCCCTCTGTAGGGCAATGGTGGAGCAAAACCCTGATTAGTGGCTGGCCTGGTTGATTTAATCAAAAGCTCAAAGGGCTGAGACTTGTCCTAAAGATATGGAATCAGTCCATCTCTGTTAACAATGTGTCATATCACAGAGAACACCTCACAGAACTGAATCAACAATGAATGGAAGGTTAATATAGTCACGTAGGCTCTTAATAATAGAAACACAGAGATCAAATAAATGCTTTTATCCATTGCTGCTGATGAAAAGATTAGATGGTGTCAGAAATGCAAAGTCAAATGGGAAGGGGATAGTAATACCACCTTTTTTCACAGTTATGAGGCTGCTTGAAAATGTAGAAGGCCATAACAGATGTTTTTAACACACAGAATGAAAGTTTGCTCTTAGATGGTGAGATCGAGGCTGCCCTTTTGAATTTCTACAAGCATCTCTTTACCAAGAAACTGGGCAGAAGACTTCTCCATCAAAATCTTGATTGAGATCATATTAATCTTGAACAAGCAACCAGCTTAGAGGCTTTTTCCCAGAAGATGGAATATGGGTGGCAGCGAAGGCTCTAGGCACCAACAACACCTCAGACAGGATGGTTTTACAACATAATTCTTTTTAAAATCTTGGAATATTCTCAACCCCGACCTAATTAAAGTGTTTCAAGACTTTCCTCTTCAAGATCATTGCTTGTGTACTTTTCAAACGTGTCAAAAAGTCGTCTCAACTGTCGTGGATTACTAATCCGCTTTTGTGGAGGTTAGACAAATTTTGGATGCTTTGATCATTGCTGGTGAGATCATAGAACAATGCTATAAGGAGAAAACTCAAGGTGTTATCATCAAGCTTTTTATGAAAAAAGCTTTTGATAAAGTGGATCGAGAATGCATTGATGATATTTTGAAAGTGAAAGGATTTGGTTTCAAATAGGGACTCTGGATCAAAGTTTTAGGACACCAATTGTGCATCAGTATAGGAGGAGGGGTAGGGGTAATTCAGGCACAAGAATTTTAAGGGGTGGGAACCACGTAGGAGAGTAGTATATATACTCTCTGTATGTGCTGAAAGCAAGGGGGTTAGTCTGGGGATAGCTTTTCGAGAGTGGAAGATAGGGAGTTAGGGACAATCATTTGTGATTGTGCCCTAGAATTTGTATTTTTCGATCATTTGCTTCTTCAATAAAGATTGATACCTTTCATATCGGTATCAAAGCAATCAAACCTCGGGAAAATATAAAAAATATGGCAATTCGTGGAGATTCAGAAACTACTGAAGATGGAGGAATCCATGAAGTCTTTGTCGAAAAGTGTGTAATGGTTGAATGTGCAAGGGATAGTCAACAACAAAGTTCGGAAGAGATGAAGAAGTTGTTGACGGATCTATTGATTGAGATTGCGCAAGTGCGATCTAATACAATTTCAAATACAGACAGAGGAGAGTCAAATGGAAGTAAGAATGTGAAATAAATGATAGAAGGAACATCCACGATGAATGAAGCAAGGGAGTAGGAGATGCAGGTGATCATTGGTTGGTCGGAGTCAGTTTTTCGACCAAACCGACACTGAACCGCCTATGGTCGGTTTAGTAAATGTTCAAATAGACCTCGATCATCAATGAGTAAATGTCGGTATGTTGATTTTTTGTTGGTCGGTTTAACTCTTTGAAATTTCTCAATTTGGAACTTTCCCAAACCAACACCGACCAACTTCGGTTTGGTCAGTCTGGTCGGTTTTTCAATCTATCATGTTCACCCCTTATAGGAGATCAGGGAGCAGATTTTAGGTAGAGTGTAGGTTTCTGCAAGGAAGCTACACTAGAGAGGAAGGAGATTAGGGATTCTTGGTAGAGTGCAGATCTTTGCAAGGAATGGAGTCTTTGCAGGGATTCATGAAGTCTTGGAAGCAATATTTCAATCCAACTGAAGCTTTGACAAAAGTCTTACTGAAGTACGATGATGTATTTGATTTGCAGAAGAATTGCCTTCGAGCTGGGGAGTAGACCATCACACTCATTTTAAAGAAGGAGAGGGCCCATTTAATTTGATGCCGTATAGATATGCCCATAGTTAGAAGTTTGAGATGGAGAAAATGGTAGTTTACATGCTTAGTCCTTATTCTACTCCAATGTTATTGGTTAAAAAAGACAGATGATGGAGGTTTTACATGGATTATAGGGTGTTGAACAACGTTACTGTTGTAGATAAATTCCCATTACCTATAGTAGATGAGTTGTTCAATGAATTAAATGGGGCAGTGTGGTTTTCTAAAATTGATTTGAAGTCCTGATATCATCAGATTAGGATGCATCCTGCTGATATGGAGAACCCTGCTTTTCATACATATGAGGGTCATTACAAATTCTTGGTAATGTCTTTCGCATTGATCAATGCACCATTTACATTTCAAGCTTTGATGAATCAAATTTTTAAATCATACTTGAGGAAGTTTGTTTTGGTATTTTTTATGCTATTTTGGTATACAGTAAGAGTACGTAAGAGCATCTAGAGCATTTGGAGATAGTGTTGGCTGTGTTGGTGGACAGTGAATTATATGCTAAATTCTGCGTGGAAGATCAGAGTATTTGGGGCATATTATTTCTAGTGAAGGAGTAGAAGTGACCCCAACAAGATACGAGCCGTGTTGGATTGGCCGGCTACTACATGTATTCGAGAGGTGTGGAGTTTTCTAGGTTTAACTGGATACTATTGAAGCTTTGTTCAGAATTATGGAAGTATGGCTGCATCACTTATGCAACTGTTATAAAAAGGAGCTTATCAATGGTTGGCTGAAGCAAATGAAGCGTTTGAAGGATTGAAGAACGCCATGGTGACTTTACCTGTGTTGGTGAGGGCAAAGAAGGAAGTGGAACATAGGCTTAAACTATTAAAAAAAATTATTCTTTTATGGATTTTGTTTTAAGAAAGCTTTCACTAAGCCACCTATTGTTTTGAAAGGAGTATAACTTTTATTAGTTTGACAATGTATTTCATAGTTAAGTTGGGATACGTTCTTAACACGACACAACATGGTGCTTGGTGTGGCATTTTCCTTAAAAGATACTCATATCGAGACATTCTACACATGGGAGGAGTGATGTGGCGTCATGGCCTTCCAACTTACAAAAATGGTGTCGCTCCATCACTTTTTCTAGAGACTCCTCTCCAAAAGAAACCTTGTATGGATCTCTCCAAACTCTTTATAACCTTTCAAGATGCTCGAAAATTTGGAGATAATAGATTGGGATGCCATAGAGAACCACGTTGAGTGAATCTCCCACCTCTAGAACATAAAATAGAGAAGAAAAAAAGTACCCCAATGCCTTTATTTGCTTGTCAATAGTTTTCCCCGAAATATTAGTTTGGTGCCGTTGATTTTGAGCCTTGAAACTAGCTCAATGGTCTCTAAATCCTAAAACCAAAAAGATGCTGTCAGTTGATTTGTTGATTACTTGTAGTTTGTATTGCAACATAAGCTTGTGTTGTTGGTGTTTAATATGTTCATGCTCCTGCATACTTCTGATATTATTCACTTATTAAGTGGGCCTCCTTCTGGTCAAATGTTTGTTGACAATTATGCAATAATTGGGCAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCGCGACTTACTTTTGATCTTTGCCAGGAGGTCTGGCTCTCTAACTCTCTTGATTTTATTTTATTCATTATCCGTTTGTGTCGATGGAGTTTTATGGAATATCTTTTCATGATAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAGGACAATATCCGGGAGTACATGGAGTCTGCGTACATCGAATCTTCCGTATTCAAGTGTGATTTTATGAAAATTTTGAGTGAACAAGTCTCTTCTTAGTACTTTTATATTAACATGACAATACAAAGATTTGACTTTCAACTTGAGAGAAAGAATAAAGGGCAATTACTACGTAGTTTTATTCAATGATTTCGTTCTGCGTATTTTGAGTGGAAAATTGATATTCGAAGGGGGGGTATATTTGGTAAATTTTTGGAAATTTTTTAGTAAAAAAAAATATATGTTTTTTAGAACAAATCTCTTCTTAGTACTTTTATATGCATGTTATGATGTAACTATAAATAATTAGATATGACTTGTTT

mRNA sequence

ATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCGCGACTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

Coding sequence (CDS)

ATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCGCGACTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

Protein sequence

MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY
Homology
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BLAST of CsaV3_1G004910 vs. NCBI nr
Match: XP_004137380.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 3.7e-106
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK
Sbjct: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180

Query: 181 QLRRKLLYSISFY 194
           QLRRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. NCBI nr
Match: XP_008446784.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 4.1e-105
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 QLRRKLLYSISFY 194
           QLRRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. NCBI nr
Match: XP_022137335.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Momordica charantia])

HSP 1 Score: 378.3 bits (970), Expect = 1.6e-101
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNA VKTAPQRWQDNAADGSFDVVF+FEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNATVKTAPQRWQDNAADGSFDVVFSFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDH +MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWE +IDDIVI FEK
Sbjct: 121 DLNTRDHGLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEGTIDDIVIAFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. NCBI nr
Match: XP_022948646.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_022948647.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata] >XP_023523675.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo] >XP_023523676.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.3 bits (970), Expect = 1.6e-101
Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDH +MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 QLRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. NCBI nr
Match: XP_022997876.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima] >XP_022997877.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima])

HSP 1 Score: 377.9 bits (969), Expect = 2.1e-101
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFNLCQEIERAESWEDTIDDIVIAFEK 180

Query: 181 QLRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 HQRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. TAIR10
Match: AT1G73820.1 (Ssu72-like family protein)

HSP 1 Score: 320.5 bits (820), Expect = 7.3e-88
Identity = 150/193 (77.72%), Postives = 172/193 (89.12%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLN R+ ++ KT+L++NLEVKDNHEEAAIG RL  +LCQEIE  E+WED+IDDIV  FEK
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKL+YSISFY
Sbjct: 181 QHRRKLVYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. Swiss-Prot
Match: sp|Q6PC19|SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio OX=7955 GN=ssu72 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-53
Identity = 98/190 (51.58%), Postives = 141/190 (74.21%), Query Frame = 0 

Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN
Sbjct: 67  DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+ T+  E+ +D+++  FE++  
Sbjct: 127 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSH 186

Query: 184 RKLLYSISFY 194
           R  L+S+ FY
Sbjct: 187 RPFLHSVCFY 194

[Close]
BLAST of CsaV3_1G004910 vs. Swiss-Prot
Match: sp|Q9CY97|SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus OX=10090 GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-53
Identity = 102/190 (53.68%), Postives = 140/190 (73.68%), Query Frame = 0 

Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

[Close]
BLAST of CsaV3_1G004910 vs. Swiss-Prot
Match: sp|Q9NP77|SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens OX=9606 GN=SSU72 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.3e-53
Identity = 102/190 (53.68%), Postives = 140/190 (73.68%), Query Frame = 0 

Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]
BLAST of CsaV3_1G004910 vs. Swiss-Prot
Match: sp|Q4KLK9|SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus OX=10116 GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.3e-53
Identity = 102/190 (53.68%), Postives = 140/190 (73.68%), Query Frame = 0 

Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

[Close]
BLAST of CsaV3_1G004910 vs. Swiss-Prot
Match: sp|Q17QI2|SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX=9913 GN=SSU72 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.6e-53
Identity = 101/190 (53.16%), Postives = 140/190 (73.68%), Query Frame = 0 

Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]
BLAST of CsaV3_1G004910 vs. TrEMBL
Match: tr|A0A1S3BFX9|A0A1S3BFX9_CUCME (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cucumis melo OX=3656 GN=LOC103489144 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.7e-105
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 QLRRKLLYSISFY 194
           QLRRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. TrEMBL
Match: tr|A0A2P5FAG2|A0A2P5FAG2_9ROSA (RNA polymerase II subunit A OS=Trema orientalis OX=63057 GN=TorRG33x02_092930 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 8.8e-96
Identity = 170/193 (88.08%), Postives = 183/193 (94.82%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 21  MKYRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 80

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VKTAPQRWQDNAADG+FDVVFTFEEKVFDMVIE
Sbjct: 81  MFDDLRRKDPELYKRNGILPMLKRNSTVKTAPQRWQDNAADGTFDVVFTFEEKVFDMVIE 140

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+TR+H +MK+VL++NLEVKDNHEEAA+GARL  DLCQEIE TE WEDSIDD+V  FEK
Sbjct: 141 DLHTREHVLMKSVLVINLEVKDNHEEAAVGARLALDLCQEIEETEMWEDSIDDVVAAFEK 200

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 201 QHRRKLLYSISFY 213

[Close]
BLAST of CsaV3_1G004910 vs. TrEMBL
Match: tr|A0A2N9GAG4|A0A2N9GAG4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24026 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.5e-95
Identity = 171/193 (88.60%), Postives = 183/193 (94.82%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+AVK APQRWQ+NAADGSFDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSAVKLAPQRWQENAADGSFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+ RDH +MKTVL++NLEVKDNHEEAAIGARLT DLCQEIE TESWEDSIDDI+  FEK
Sbjct: 121 DLHNRDHTLMKTVLVINLEVKDNHEEAAIGARLTLDLCQEIEATESWEDSIDDIIAAFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. TrEMBL
Match: tr|D7T1F4|D7T1F4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.6e-95
Identity = 168/193 (87.05%), Postives = 183/193 (94.82%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+ RDH +MKTVL++NLEVKDNHEEAAIGARL  DLCQEIE TESWEDS+DD+V  FEK
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEIEATESWEDSVDDVVSGFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]
BLAST of CsaV3_1G004910 vs. TrEMBL
Match: tr|A0A2I4DHJ6|A0A2I4DHJ6_9ROSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Juglans regia OX=51240 GN=LOC108980210 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 3.1e-93
Identity = 167/193 (86.53%), Postives = 181/193 (93.78%), Query Frame = 0 

Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKREGFEVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120
           M++DLRRKD ELYKRNGILPMLKRN+ VK APQRWQDNAADGSFDVVFTFEEKVFD+V+E
Sbjct: 61  MYEDLRRKDSELYKRNGILPMLKRNSTVKLAPQRWQDNAADGSFDVVFTFEEKVFDIVVE 120

Query: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180
           DL+ RDH ++KTVL++NLEVKDNHEEAAIGARLT DLCQEIE +ESWEDSIDDIV NFEK
Sbjct: 121 DLHNRDHVLLKTVLVINLEVKDNHEEAAIGARLTLDLCQEIEVSESWEDSIDDIVANFEK 180

Query: 181 QLRRKLLYSISFY 194
           Q RRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004910 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137380.13.7e-106100.00PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu... [more]
XP_008446784.14.1e-10598.96PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu... [more]
XP_022137335.11.6e-10195.85RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Momordica chara... [more]
XP_022948646.11.6e-10195.85RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita mosch... [more]
XP_022997876.12.1e-10195.85RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxim... [more]
BLAST of CsaV3_1G004910 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73820.17.3e-8877.72Ssu72-like family protein[more]
BLAST of CsaV3_1G004910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6PC19|SSU72_DANRE3.3e-5351.58RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio O... [more]
sp|Q9CY97|SSU72_MOUSE3.3e-5353.68RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ... [more]
sp|Q9NP77|SSU72_HUMAN4.3e-5353.68RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ... [more]
sp|Q4KLK9|SSU72_RAT4.3e-5353.68RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg... [more]
sp|Q17QI2|SSU72_BOVIN5.6e-5353.16RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX... [more]
BLAST of CsaV3_1G004910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BFX9|A0A1S3BFX9_CUCME2.7e-10598.96RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cucumis melo ... [more]
tr|A0A2P5FAG2|A0A2P5FAG2_9ROSA8.8e-9688.08RNA polymerase II subunit A OS=Trema orientalis OX=63057 GN=TorRG33x02_092930 PE... [more]
tr|A0A2N9GAG4|A0A2N9GAG4_FAGSY1.5e-9588.60Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24026 PE=4 SV=1[more]
tr|D7T1F4|D7T1F4_VITVI2.6e-9587.05Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g01900 PE=4 SV=... [more]
tr|A0A2I4DHJ6|A0A2I4DHJ6_9ROSI3.1e-9386.53RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Juglans regia... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0006369 termination of RNA polymerase II transcription
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005847 mRNA cleavage and polyadenylation specificity factor complex
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008420 CTD phosphatase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004910.1CsaV3_1G004910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 4..193
e-value: 1.3E-80
score: 269.4
IPR006811RNA polymerase II subunit APANTHERPTHR20383FAMILY NOT NAMEDcoord: 1..193
NoneNo IPR availableGENE3DG3DSA:3.40.50.2300coord: 75..193
e-value: 1.1E-37
score: 130.9
NoneNo IPR availableGENE3DG3DSA:3.40.50.2300coord: 1..74
e-value: 5.2E-16
score: 60.6
NoneNo IPR availablePANTHERPTHR20383:SF9RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72coord: 1..193

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G004910CSPI01G04960Wild cucumber (PI 183967)cpicucB001
CsaV3_1G004910Cucsa.112130Cucumber (Gy14) v1cgycucB143
CsaV3_1G004910CmaCh01G007470Cucurbita maxima (Rimu)cmacucB0519
CsaV3_1G004910Cp4.1LG02g09880Cucurbita pepo (Zucchini)cpecucB0660
CsaV3_1G004910CsGy1G004810Cucumber (Gy14) v2cgybcucB002
CsaV3_1G004910Carg06995Silver-seed gourdcarcucB0552
CsaV3_1G004910Cla018666Watermelon (97103) v1cucwmB068
CsaV3_1G004910MELO3C001923Melon (DHL92) v3.5.1cucmeB018
CsaV3_1G004910ClCG04G012830Watermelon (Charleston Gray)cucwcgB061
CsaV3_1G004910Lsi02G000110Bottle gourd (USVL1VR-Ls)cuclsiB037
CsaV3_1G004910MELO3C001923.2Melon (DHL92) v3.6.1cucmedB016
CsaV3_1G004910Cla97C04G079860Watermelon (97103) v2cucwmbB052
CsaV3_1G004910Bhi08G001588Wax gourdcucwgoB059
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G004910Watermelon (97103) v2cucwmbB054
CsaV3_1G004910Wax gourdcucwgoB036
CsaV3_1G004910Silver-seed gourdcarcucB0555
CsaV3_1G004910Cucurbita maxima (Rimu)cmacucB0247
CsaV3_1G004910Cucurbita maxima (Rimu)cmacucB0513
CsaV3_1G004910Cucurbita moschata (Rifu)cmocucB0233
CsaV3_1G004910Cucurbita moschata (Rifu)cmocucB0501
CsaV3_1G004910Cucurbita moschata (Rifu)cmocucB0506
CsaV3_1G004910Cucurbita pepo (Zucchini)cpecucB0665
CsaV3_1G004910Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G004910Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G004910Watermelon (97103) v1cucwmB070