Cp4.1LG02g09880 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g09880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Location	Cp4.1LG02 : 10066754 .. 10071646 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGGCCCAAACAACCCTTCTGAGAGAACTCCTAAAACAATCATCTTTGTCCTTTCTTTATGCCTAAAATGAAGGCTAAGAAGAGTACTCAAATTCCCGACGAAATTCAACTGTGATCAACCGTAATCCTGCTGCTCCCACGCCGGTTTCTCATCGGAGATTCGCCATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCCGGACCTTCTCTCCGAGAACCTAATGTATACGATTTTGGTACACCTTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTGTATCCTTTTTCTCCCCCTCCACGAAGACTGGTGGTACTATTTTCTTGTCTTCAGCATTTTTTTTTAAACTAAATTTCCCAGTTGGACTGTTCTAGATCTCAGTAATGGTTTAACCTTAAAACTTGCATAGATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAATGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGGTTAGTTTGCCTTCTTGAATTTATGCTTGTGAAAGTTAATGGCTCTGCAATGTACGATAGTAGAATTCTTGGCTTCTTTTGCGAGCTCTAACGATGCTTTTTTTCAAGTTTACTTTTAGCAGTTCTGTGCTATATATATAAGATTTATTGTGACTATATTGCCATTGGGACTTGGTTGTGATTGATTGCTGTTGGACCAAGAAGTTATGGGGTGATTATAAGTAGTTTGATGATCAATCCTTAGCATTTATATAAACAGTGATTACATGTTCTATATCAGCTTCAGAGGTTTTCTTTATTTGTGTTTCATAATTATTAATTAGAAGTCATGAATCCTTGATGAAAGACTTTGTGTGAGGAAATTTTACTTGTAGAGAGGAAATGGCCAGTGTAAGATCAGGGTAAACATTAAGTGGGACCGAAGTGGAGTCATCGGTAAGATATCGAGCTTTCATTGAGAAAAATGAAAGAATATACAAGGGCAATAAAAAAAAAAAAAACAAGCCCAATAAAACAAAACAAAAATCCCAAAAAGCTACAAAAAAGGACTCCAATCTAACAAAATCAAGCCAAGACTATAATTATAGAAAGGCTTAGTGACTGATGCCTACAAAGAGGCATTAAACCTAACCACCTTCTAGACCTCATCCACAAGACTGCTCCAACTCTCTCAAAATTTGATTGTTTCTTTCAACCCAAACTCCCCACAAAATAGTAAAGAAACTAGCATGCCACAAAATAGTGCCACTCTCACGAAAAGGTGACCCCATAAGCGCCTTATTGATTGAAGCAAAACAATCATCATTCCACACCCAAATTAAATCAAAGGAGCACCTACCCAAAGGGACTTAACGAACTTCCCACAATAAGTGATGATGGTTCTCAAACTGACATTTACAAGATCACACTGTTGCGGGGACAACTCCGGAAAAGAATATCTCTGTACACAGTCCAAATTTTTACTCGAATAAAAAAATTTCTTCCATTTGTGACTTTGGTTTTTATATTGTACCATTGACCATACATGGTTTGTGGGAATTGGAGATGTGGATTTGAACCTCCGACTACAAAGGATAAAGTAGGTGTTTTTAACTTCTAAGCTATGCTTATGTTGGTTGCAATCATAGATGGTATGGAAGTGTTATTTAGGCACAGGAAGATTTATATTTGTGTCAAATGCATGTGTCACTGTCATGTTGGTTTTCAGGTACATTTAGTAATATAATTCATAATGGCTTGGATAAATAATATTATTTTCCCCTTAGAAATAGGATTTTCTTCCCTGTTGCAAACCACATCTTATAATCCAATATGATTTTTCTCATGTCATTTGATGTTTAGTAAAGACATAATTATGAAGTAGAACGAACGGGATACATCTGAAAACTAGGCAAAAGGCAGCCTAAGAGCTCCAATTTGAGAAAGTTAAAGCAGTATACTTAATTTTATTCCCAAAGGCCCGTTATAATGGTATTCATGCAAAGAATTCAAATATTTGCTAATTTTTTAGGTTGTGCCCAGGTAAGCACTGTTCTATTCCATGGTTTCTTTTACTGATGATAGGAGACTTCAAGAGATGCTGAAATTGTTGATGATGTATTTACTGTGAAGAAAAAGATAACTTGTTTCTTCCCTATGCCCTCTCTACAAAGGATATGCCAGTTTTTTGGAGACAATTTTGATGCCTAATTTGAAATCACTCCTTGCTGTTAAGTTCTTCAATGGAAAGCTGCCAGAAAGTTATTTAAACCTTCTTACGGATATTACTTCTCCAGATGCATTTTCTCATGTGATTACGGATGGCCAATTGACAAATCCTCGATCCGATTTTACTAGCAAATGAGGTTGTGGAAGTTTATAGAGCTAAAAAGAAGCGTGGATGGATTCTGAAATTAGACATTGAAAAAGCTTTTATTTGTGTTGATTTTCACCATTGTCAAGATTAATTTTATACAATTTCTCTGCTTTACAACAAGTCTTATAGATGGATTTCCAGTCCCCTTAGTTGGGCGGGTGGCCTTACTAATTTGGAACCGCTCCTCCTTTGCTAGCGATTACTTCTTTCCATAGGGCAGCTGGCCCTTTCATAAATCTCCATCCCCATTTTGCAAGTAAACTGATGCTCTACCTTTAAGGTTACTCATAACAAGGTCTTCTCTAAATGTAGGGAGTGATGTGGTCTTCCAATTTACAAAAATGCCACCGCTCTCTCTAGAGGCTCCTCTCCAGAAGAAATCATATATAGACGTCTCCAGACTCTGTAAACCCTTCCCAAAGCACTAAAAATTTAGAGGTAATAGATTGGGATGCTAGAAAGAACTGCATTAGCAAGTGTGTGTTCCTACCTCTTGAACATAAAAGATTACCCTAATTTGAGAGCTTAGAAGCTATCTTCTCCTCAACTGGAGTCCAAAACATTTGAAACTTAGGGTTGCTCCAATGACACTCTAAACTCCCAAGTTAGGCAGAAGCCAGTTCCCAACATTGCAACTCCATCTTTCAGCAGCATTCTTTTCTTTGCTTTCATGTAGATTTGTGACCGAAATGGCAATCTTCTGCCAATTGATTTTCAAGCCCTAAAACTAGCTCAAAAATGTCGACAATCTCCTTTGACTTTAACTTATCTTCACTATATTCTAAGAACAAGACACACGTGAATTTGATATCTACCCACCAAGAAGCCATTTATGCTTCCTCTTTCATAAGCCTTCTCCAGCATTCATCACATCAGCTACAATCACAAAGAGGACAGGGCTAAGGGGTCTCTTGCATCAAGCCTCTAGATGCTTAAATAAGGCCTCTTAGCCATCTAAAACAAAGATTGAAAAGAAGGTGTTAGTAAGATAACTTCTATCCATCCCACACACCTTTCTCCAAAGCCTTTGTTTTGAAGGACATCAAGCAAGAAATCCCAATCCACGACTTCCTAAGCTTTTTCAAAGTCAAGCTTGATGACTCAACCTTTCTTCTTCTTGTATTTATACTCACCAACTAGCTCAATCGCCACGAGGATTAAATCAAGGGTCCGTCTTCCAAAATGAACATCAAGTGGATAAGAGAGATGATAAGTTGCAACACATCCTAAGCTTTTTTGACATCAAGCTTGATCACTTAACCTTTCTTCTTCTTGAATTTGTACTCACCAATTAGCTCATTTGCCACAAGGACTAAATCAAGGATCCATCTTCAAAAATGAACATCAAGTAACCATAAGAGATGATAAGAGGCAACACTCCTTGGCCTATTAGAAAGAACTTTAGCCACAACTTTATTAACACTAGTTACAAGGCTAATGGACCTATAATCAGCCACCTTTGACACTCCCGTTCTTTTCAGGATGAGGCATAAGTAGGTTTTATTCATGCACTTGTTTANAAAAAAAAAAAAAAAAAAAAAGAAGATACCCCTATATTATCTGATATTATGTCAAGGAACTATTGTTTAGTCTGGATTGTTGCATCATAAGCTTGCGTTCTTGGCGTTCAATGTGTGCTTATGTTCATGTATACTTCTTATATTACTCATTTATCAAGATGGCCGCTTCTGAAATATTTTTTCTACTCAACCGTCTGATGATAATTATGCAATAATTGAGCAGATCTCAACACACGTGATCATGTACTGATGAAAACTGTACTGATTGTAAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGGTCCAGCTCTCTTGAATTTCTTTTCATTATATTCGTTTGTGTGGATTTGTTATGATTTTTTTTTTCTTTGCTTTTTTATGATAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAACATCAAAGAAGAAAACTGTTGTATAGCATTTCTTTTTACTAAAGACACCATGATCCTACTGGAGTACGGAATATGTGCTGCTGCAACTGTAAGCATATTGGTCATTTTATTTGGTTGCTCTCTTTTGAAGTACTTCTTTTTAAGAAACCAAAACTAAAGTAGGAAAATAGCTTGTTGGCGGAGTCTGCTTACATCAACTCTTTGTGATTCAGTTCATACTCTAATACACTTTTTGGACCCTAATAGTGTCTATTGGTCACTATTGGTCCTTGAAGATTCAAAAGTAGCATTTTAGTCCATGAAATTTATAAAATAGTTCTATAATTGACCACTTGTGGAATTGCTAAGTTGTCAAATTTTAAATGATTTGATAG

mRNA sequence

CAAGGCCCAAACAACCCTTCTGAGAGAACTCCTAAAACAATCATCTTTGTCCTTTCTTTATGCCTAAAATGAAGGCTAAGAAGAGTACTCAAATTCCCGACGAAATTCAACTGTGATCAACCGTAATCCTGCTGCTCCCACGCCGGTTTCTCATCGGAGATTCGCCATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCCGGACCTTCTCTCCGAGAACCTAATGTATACGATTTTGGTACACCTTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAATGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATCTCAACACACGTGATCATGTACTGATGAAAACTGTACTGATTGTAAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAACATCAAAGAAGAAAACTGTTGTATAGCATTTCTTTTTACTAAAGACACCATGATCCTACTGGAGTACGGAATATGTGCTGCTGCAACTGAAAATAGCTTGTTGGCGGAGTCTGCTTACATCAACTCTTTGTGATTCAGTTCATACTCTAATACACTTTTTGGACCCTAATAGTGTCTATTGGTCACTATTGGTCCTTGAAGATTCAAAAGTAGCATTTTAGTCCATGAAATTTATAAAATAGTTCTATAATTGACCACTTGTGGAATTGCTAAGTTGTCAAATTTTAAATGATTTGATAG

Coding sequence (CDS)

ATGAAGTATCGTTATGCAATGGTTTGTTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTCAAGCTTCCCGGACCTTCTCTCCGAGAACCTAATGTATACGATTTTGGTACACCTTACAAGCACATGTTCGATGATCTCCGCCGAAAAGATCCTGAACTATACAAGCGTAATGGCATTCTGCCTATGCTTAAGAGAAATGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTTCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTTATTGAAGATCTCAACACACGTGATCATGTACTGATGAAAACTGTACTGATTGTAAACTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGGCTGAATCATGGGAAGATACGATTGATGATATCGTGATTGCCTTCGAGAAACATCAAAGAAGAAAACTGTTGTATAGCATTTCTTTTTACTAA

Protein sequence

MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQRRKLLYSISFY

Homology

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BLAST of Cp4.1LG02g09880 vs. Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-52
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

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BLAST of Cp4.1LG02g09880 vs. Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-52
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]

BLAST of Cp4.1LG02g09880 vs. Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-52
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V +VN++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RAFLHTVCFY 194

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BLAST of Cp4.1LG02g09880 vs. Swiss-Prot
Match: SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.0e-52
Identity = 100/190 (52.63%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

[Close]

BLAST of Cp4.1LG02g09880 vs. Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.9e-52
Identity = 100/190 (52.63%), Postives = 138/190 (72.63%), Query Frame = 1


Query: 4   RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFD 63
           R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLN 126

Query: 124 TRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEKHQR 183
           +R+    + V ++N++++DNHEEA +GA L  +LCQ I+  E  E+ ID+++  FE+   
Sbjct: 127 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSG 186

Query: 184 RKLLYSISFY 194
           R  L+++ FY
Sbjct: 187 RTFLHTVCFY 194

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BLAST of Cp4.1LG02g09880 vs. TrEMBL
Match: D7T1F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.5e-94
Identity = 167/193 (86.53%), Postives = 182/193 (94.30%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DL+ RDHVLMKTVL++NLEVKDNHEEAAIGARL  DLCQEIE  ESWED++DD+V  FEK
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEIEATESWEDSVDDVVSGFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. TrEMBL
Match: M5WAQ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.7e-93
Identity = 169/193 (87.56%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VK APQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSTVKLAPQRWQDNAADGSFDVVFTFEEKVFDMVLE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLN RDHVL K  LI+NLEVKDNHEEAA+GARL  DLCQEIE AESWED+IDDIV  FEK
Sbjct: 121 DLNNRDHVLKKCALIINLEVKDNHEEAAVGARLALDLCQEIEAAESWEDSIDDIVNGFEK 180

Query: 181 HQRRKLLYSISFY 194
            QRRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. TrEMBL
Match: A0A067DWF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029458mg PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.1e-91
Identity = 164/193 (84.97%), Postives = 175/193 (90.67%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAH +LK  GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYK 
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN  VK APQRWQDNA DG FD+VFTFEEKVFD V+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTR+   MKTVL++NLEVKDNHEEAAIG RLTFDLCQEIE AESWE++IDDI+ AFEK
Sbjct: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 RHRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. TrEMBL
Match: V4SC52_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005966mg PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.1e-91
Identity = 164/193 (84.97%), Postives = 175/193 (90.67%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAH +LK  GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYK 
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN  VK APQRWQDNA DG FD+VFTFEEKVFD V+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTR+   MKTVL++NLEVKDNHEEAAIG RLTFDLCQEIE AESWE++IDDI+ AFEK
Sbjct: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEIEAAESWEESIDDIIAAFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 RHRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. TrEMBL
Match: B9RPG0_RICCO (Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.5e-91
Identity = 163/193 (84.46%), Postives = 180/193 (93.26%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKLRYAMVCSSNQNRSMEAHSLLKMQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VK APQRWQDNAADG FDVVF+FEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKLAPQRWQDNAADGSFDVVFSFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DL+ RDHVLM++VL++NLEVKDNHEEAAIGARL  +LCQEIE AESWED+ID+I+ AFE 
Sbjct: 121 DLHNRDHVLMRSVLVINLEVKDNHEEAAIGARLALELCQEIEAAESWEDSIDEIITAFET 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYS+SFY
Sbjct: 181 KHRRKLLYSVSFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. TAIR10
Match: AT1G73820.1 (AT1G73820.1 Ssu72-like family protein)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-87
Identity = 151/193 (78.24%), Postives = 170/193 (88.08%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLN R+  L KT+L++NLEVKDNHEEAAIG RL  +LCQEIE  E+WEDTIDDIV  FEK
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKL+YSISFY
Sbjct: 181 QHRRKLVYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: gi|659066237|ref|XP_008446784.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 4.9e-102
Identity = 186/193 (96.37%), Postives = 187/193 (96.89%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: gi|449439211|ref|XP_004137380.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 1.4e-101
Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLNTRDH +MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Sbjct: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QLRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: gi|225435973|ref|XP_002271255.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera])

HSP 1 Score: 353.6 bits (906), Expect = 2.2e-94
Identity = 167/193 (86.53%), Postives = 182/193 (94.30%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDP+LYKRNGILPMLKRN++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DL+ RDHVLMKTVL++NLEVKDNHEEAAIGARL  DLCQEIE  ESWED++DD+V  FEK
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEIEATESWEDSVDDVVSGFEK 180

Query: 181 HQRRKLLYSISFY 194
             RRKLLYSISFY
Sbjct: 181 QHRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: gi|595848953|ref|XP_007209633.1| (hypothetical protein PRUPE_ppa011857mg [Prunus persica])

HSP 1 Score: 350.1 bits (897), Expect = 2.4e-93
Identity = 169/193 (87.56%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN+ VK APQRWQDNAADG FDVVFTFEEKVFDMV+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSTVKLAPQRWQDNAADGSFDVVFTFEEKVFDMVLE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLN RDHVL K  LI+NLEVKDNHEEAA+GARL  DLCQEIE AESWED+IDDIV  FEK
Sbjct: 121 DLNNRDHVLKKCALIINLEVKDNHEEAAVGARLALDLCQEIEAAESWEDSIDDIVNGFEK 180

Query: 181 HQRRKLLYSISFY 194
            QRRKLLYSISFY
Sbjct: 181 QQRRKLLYSISFY 193

[Close]

BLAST of Cp4.1LG02g09880 vs. NCBI nr
Match: gi|658063391|ref|XP_008367615.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Malus domestica])

HSP 1 Score: 345.9 bits (886), Expect = 4.6e-92
Identity = 167/193 (86.53%), Postives = 177/193 (91.71%), Query Frame = 1


Query: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MK+RYAMVCSSNQNRSMEAHS+LK +GF+V+SYGTGAHVKLPGPSLREPNVYDFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVASYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE 120
           MFDDLRRKDPELYKRNGILPMLKRN  VK APQRWQDNAADG FDVV TFEEKVFDMVIE
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNLGVKLAPQRWQDNAADGSFDVVLTFEEKVFDMVIE 120

Query: 121 DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK 180
           DLN RDHVL K VLI+NLEVKDNHEEAA+GARL  DLCQEIE AESWE++IDDIV  FEK
Sbjct: 121 DLNNRDHVLRKCVLIINLEVKDNHEEAAVGARLALDLCQEIEAAESWEESIDDIVSGFEK 180

Query: 181 HQRRKLLYSISFY 194
            QRRKL+YSISFY
Sbjct: 181 QQRRKLVYSISFY 193

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g09880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSU72_MOUSE	3.5e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
SSU72_HUMAN	4.6e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]
SSU72_RAT	4.6e-52	53.16	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg...	[more]
SSU72_BOVIN	6.0e-52	52.63	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN...	[more]
SSU72_CHICK	7.9e-52	52.63	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus...	[more]

BLAST of Cp4.1LG02g09880 vs. TrEMBL


Match Name	E-value	Identity	Description
D7T1F4_VITVI	1.5e-94	86.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=...	[more]
M5WAQ3_PRUPE	1.7e-93	87.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1	[more]
A0A067DWF9_CITSI	2.1e-91	84.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029458mg PE=4 SV=1	[more]
V4SC52_9ROSI	2.1e-91	84.97	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005966mg PE=4 SV=1	[more]
B9RPG0_RICCO	3.5e-91	84.46	Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g09880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73820.1	1.2e-87	78.24	Ssu72-like family protein	[more]

BLAST of Cp4.1LG02g09880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066237\|ref\|XP_008446784.1\|	4.9e-102	96.37	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|449439211\|ref\|XP_004137380.1\|	1.4e-101	95.85	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|225435973\|ref\|XP_002271255.1\|	2.2e-94	86.53	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Viti...	[more]
gi\|595848953\|ref\|XP_007209633.1\|	2.4e-93	87.56	hypothetical protein PRUPE_ppa011857mg [Prunus persica]	[more]
gi\|658063391\|ref\|XP_008367615.1\|	4.6e-92	86.53	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006369	termination of RNA polymerase II transcription
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0008420	CTD phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g09880.1	Cp4.1LG02g09880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 1..193 score: 7.8E
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 4..193 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g09880	Cucsa.112130	Cucumber (Gy14) v1	cgycpeB0260
Cp4.1LG02g09880	CmaCh01G007470	Cucurbita maxima (Rimu)	cmacpeB490
Cp4.1LG02g09880	Cla018666	Watermelon (97103) v1	cpewmB578
Cp4.1LG02g09880	Csa1G030640	Cucumber (Chinese Long) v2	cpecuB531
Cp4.1LG02g09880	MELO3C001923	Melon (DHL92) v3.5.1	cpemeB491
Cp4.1LG02g09880	ClCG04G012830	Watermelon (Charleston Gray)	cpewcgB507
Cp4.1LG02g09880	CSPI01G04960	Wild cucumber (PI 183967)	cpecpiB533
Cp4.1LG02g09880	Lsi02G000110	Bottle gourd (USVL1VR-Ls)	cpelsiB446
Cp4.1LG02g09880	MELO3C001923.2	Melon (DHL92) v3.6.1	cpemedB582
Cp4.1LG02g09880	CsaV3_1G004910	Cucumber (Chinese Long) v3	cpecucB0660
Cp4.1LG02g09880	Bhi08G001588	Wax gourd	cpewgoB0706
Cp4.1LG02g09880	CsGy1G004810	Cucumber (Gy14) v2	cgybcpeB093
Cp4.1LG02g09880	Carg06995	Silver-seed gourd	carcpeB0738

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g09880	Silver-seed gourd	carcpeB0546
Cp4.1LG02g09880	Cucumber (Chinese Long) v3	cpecucB0665
Cp4.1LG02g09880	Cucurbita pepo (Zucchini)	cpecpeB433
Cp4.1LG02g09880	Cucumber (Gy14) v1	cgycpeB0261
Cp4.1LG02g09880	Cucurbita moschata (Rifu)	cmocpeB448
Cp4.1LG02g09880	Wild cucumber (PI 183967)	cpecpiB535
Cp4.1LG02g09880	Cucumber (Chinese Long) v2	cpecuB533
Cp4.1LG02g09880	Cucumber (Gy14) v2	cgybcpeB098