Cucsa.258020 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.258020
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionEthylene-responsive transcription factor
Locationscaffold02229 : 5133385 .. 5133989 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGGCAGAGAAACCAAGAGATCCGCCACAGTTTCCCGCTGCATCTCACATTCGCAACCCAACAAATCACCCGCACGGAGGTTCGTCGGAGTACGGCAGCGCCCGTCCGGGCGGTGGGTGGCGGAAATAAAAGACTCTTCTCAGAGAGTCCGCCTTTGGTTAGGCACTTACGACACGCCGGAGGAAGCCGCCCGAGCCTACGACGAGGCTGCCATTGCTCTTCGCGGCGAAAACGCAAGGACCAATTTCGTGTCTCCGGCGACCGGTTGGTCACCGGATTCGAAAGTCTCGAACATCGGCGTGTTGAAAGCGAAATTGAGCAAGAATCTGCAGAGTATTATAGCGCGAACGAGCGAACAGAGCAAATCGTTGAAGAACAGAGTGAGCGATCGGTTCACCTTTGGGAATATTTTCAATTTCAGAAGCTATCAGTCGGCAACAATGGCGGATTTGACGGCCATTGATAAGGCTGCTGTACAGCCGAGCATAATTGTACCCCATGTAGAAACCGATCGTTCCGGTTCGTGGGATAGCAGCGATGGCGAGGGAATCCGGCCACTGGGGTTCAGCTCCGATGGGTCGGAGGTGGCGGGAGATTG

mRNA sequence

ATGGCCGCCGGCAGAGAAACCAAGAGATCCGCCACAGTTTCCCGCTGCATCTCACATTCGCAACCCAACAAATCACCCGCACGGAGGTTCGTCGGAGTACGGCAGCGCCCGTCCGGGCGGTGGGTGGCGGAAATAAAAGACTCTTCTCAGAGAGTCCGCCTTTGGTTAGGCACTTACGACACGCCGGAGGAAGCCGCCCGAGCCTACGACGAGGCTGCCATTGCTCTTCGCGGCGAAAACGCAAGGACCAATTTCGTGTCTCCGGCGACCGGTTGGTCACCGGATTCGAAAGTCTCGAACATCGGCGTGTTGAAAGCGAAATTGAGCAAGAATCTGCAGAGTATTATAGCGCGAACGAGCGAACAGAGCAAATCGTTGAAGAACAGAGTGAGCGATCGGTTCACCTTTGGGAATATTTTCAATTTCAGAAGCTATCAGTCGGCAACAATGGCGGATTTGACGGCCATTGATAAGGCTGCTGTACAGCCGAGCATAATTGTACCCCATGTAGAAACCGATCGTTCCGGTTCGTGGGATAGCAGCGATGGCGAGGGAATCCGGCCACTGGGGTTCAGCTCCGATGGGTCGGAGGTGGCGGGAGATTG

Coding sequence (CDS)

ATGGCCGCCGGCAGAGAAACCAAGAGATCCGCCACAGTTTCCCGCTGCATCTCACATTCGCAACCCAACAAATCACCCGCACGGAGGTTCGTCGGAGTACGGCAGCGCCCGTCCGGGCGGTGGGTGGCGGAAATAAAAGACTCTTCTCAGAGAGTCCGCCTTTGGTTAGGCACTTACGACACGCCGGAGGAAGCCGCCCGAGCCTACGACGAGGCTGCCATTGCTCTTCGCGGCGAAAACGCAAGGACCAATTTCGTGTCTCCGGCGACCGGTTGGTCACCGGATTCGAAAGTCTCGAACATCGGCGTGTTGAAAGCGAAATTGAGCAAGAATCTGCAGAGTATTATAGCGCGAACGAGCGAACAGAGCAAATCGTTGAAGAACAGAGTGAGCGATCGGTTCACCTTTGGGAATATTTTCAATTTCAGAAGCTATCAGTCGGCAACAATGGCGGATTTGACGGCCATTGATAAGGCTGCTGTACAGCCGAGCATAATTGTACCCCATGTAGAAACCGATCGTTCCGGTTCGTGGGATAGCAGCGATGGCGAGGGAATCCGGCCACTGGGGTTCAGCTCCGATGGGTCGGAGGTGGCGGGAGATTG

Protein sequence

MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDSSDGEGIRPLGFSSDGSEVAGDX
Homology
[Close]
BLAST of Cucsa.258020 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-20
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 21 QPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGEN 80
          + +K    +FVGVRQRPSG+WVAEIKD++Q++R+WLGT++T EEAARAYDEAA  LRG N
Sbjct: 13 EKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSN 72

Query: 81 ARTNFVS 88
           RTNF +
Sbjct: 73 TRTNFAN 79

[Close]
BLAST of Cucsa.258020 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1 

Query: 5   RETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEE 64
           R  K  +TVS  +S +    +  ++F GVRQRP G+W AEI+D  +RVRLWLGTY+T EE
Sbjct: 98  RAVKSESTVSPVVS-ATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEE 157

Query: 65  AARAYDEAAIALRGENARTNF-VSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTSEQS 124
           AA  YD AAI LRG +A TNF V+P T  + + K      +K K  KN +S  + T+  S
Sbjct: 158 AAMVYDNAAIQLRGPDALTNFSVTPTT--ATEKKAPPPSPVKKKKKKNNKSKKSVTASSS 216

Query: 125 KS 126
            S
Sbjct: 218 IS 216

[Close]
BLAST of Cucsa.258020 vs. Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1 

Query: 26  PARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGENARTNF 85
           PA+ + GVRQR  G+WVAEI+    R RLWLGT+DT EEAA AYD AA  LRG++AR NF
Sbjct: 139 PAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNF 198

Query: 86  --VSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTSEQ 123
             +   TG SP S     G ++A +   L++I+A    Q
Sbjct: 199 PALRYQTGSSP-SDTGEYGPIQAAVDAKLEAILAEPKNQ 236

[Close]
BLAST of Cucsa.258020 vs. Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 28  RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGENARTNFVS 87
           R+F GVRQRP G+W AEI+D S+RVR+WLGT+DT EEAA  YD AAI LRG NA  NF  
Sbjct: 85  RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPP 144

Query: 88  P 89
           P
Sbjct: 145 P 145

[Close]
BLAST of Cucsa.258020 vs. Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 1 

Query: 30  FVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGENARTNFVSPA 89
           F+GVR+RP GRW AEI+D   R R WLGT+DT EEAARAYD AA  LRG  A+TNFV P 
Sbjct: 116 FMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNFVIPP 175

Query: 90  TGWSPDSKVSNIGVLKAKLSKNLQSIIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQSAT 149
                 ++      ++ K  K  +    + S +       V+  F   N  N  S +   
Sbjct: 176 LFPKEIAQAQEDNRMRQKQKKKKKK---KVSVRKCVKVTSVAQLFDDANFINSSSIKGNV 235

Query: 150 MADLTAIDKAAVQ 163
           ++ +  ++K  ++
Sbjct: 236 ISSIDNLEKMGLE 245

[Close]
BLAST of Cucsa.258020 vs. TrEMBL
Match: A0A0A0L8Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124760 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 5.6e-108
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1 

Query: 1   MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60
           MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD
Sbjct: 1   MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60

Query: 61  TPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTS 120
           TPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTS
Sbjct: 61  TPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTS 120

Query: 121 EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDS 180
           EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDS
Sbjct: 121 EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDS 180

Query: 181 SDGEGIRPLGFSSDGSEVAGD 202
           SDGEGIRPLGFSSDGSEVAGD
Sbjct: 181 SDGEGIRPLGFSSDGSEVAGD 201

[Close]
BLAST of Cucsa.258020 vs. TrEMBL
Match: B9IC72_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07280g PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.3e-51
Identity = 131/224 (58.48%), Postives = 149/224 (66.52%), Query Frame = 1 

Query: 1   MAAGRETKRSATVSRCISHSQPNKSPA-RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 60
           MA     + S TV+   +  Q  K P  RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY
Sbjct: 1   MAEPETLRNSPTVTT--TKVQATKGPTLRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 60

Query: 61  DTPEEAARAYDEAAIALRGENARTNF--VSPATGWSPDSKVSNIGV-------------- 120
           DTPEEAARAYDEAA ALRGENARTNF  VSP    S  S  SN G+              
Sbjct: 61  DTPEEAARAYDEAARALRGENARTNFASVSPNLNQSGSSPSSNGGLNMSESDERHGLSFS 120

Query: 121 -LKAKLSKNLQSIIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQ 180
            LKAKLSKNLQSI+ART+E +KS KNRVSD FTF NIF+FR +Q     D+ +I+K  VQ
Sbjct: 121 SLKAKLSKNLQSIMARTTE-NKSTKNRVSDHFTFANIFHFRGHQYQNPVDMKSIEK-VVQ 180

Query: 181 PSIIVPHVETDR-SGSWD-------SSDGEGIRPLGFSSDGSEV 199
           PSIIVPHV   + S SW+       S++  G R  GF SDGS++
Sbjct: 181 PSIIVPHVSDHKPSYSWETSCVSDCSNEWIGFRQHGFDSDGSDI 220

[Close]
BLAST of Cucsa.258020 vs. TrEMBL
Match: A0A061DTN1_THECC (AP2/ERF domain-containing transcription factor OS=Theobroma cacao GN=TCM_005425 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.5e-49
Identity = 127/223 (56.95%), Postives = 146/223 (65.47%), Query Frame = 1 

Query: 3   AGRETKRSATVSRCISH---SQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 62
           AG ET ++ T     +    SQP K   RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY
Sbjct: 2   AGSETAKATTTGITTTDNTMSQPTKPMVRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 61

Query: 63  DTPEEAARAYDEAAIALRGENARTNFV-----------SPATGWSPDSKVSNIGV----L 122
           DTPEEAARAYDEAA ALRGENARTNF            SP+ G          G+    L
Sbjct: 62  DTPEEAARAYDEAARALRGENARTNFAPVNHNSSQSGSSPSNGGFVSQSDGRHGLSFSSL 121

Query: 123 KAKLSKNLQSIIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQ-SATMADLTAIDKAAVQP 182
           KAKLSKNLQSI+ART+E +KS K+RVSD FTF +IF+FR+YQ      D+  I+K  VQP
Sbjct: 122 KAKLSKNLQSIMARTTE-NKSTKSRVSDHFTFASIFHFRNYQYQNPPVDMKNIEK-VVQP 181

Query: 183 SIIVPH-VETDRSGSWDSS-------DGEGIRPLGFSSDGSEV 199
           SIIVP  V+   S +WDSS       +  G R  GF SDGS++
Sbjct: 182 SIIVPRAVDEPPSSNWDSSSVSDCSNEWVGFRQHGFDSDGSDI 222

[Close]
BLAST of Cucsa.258020 vs. TrEMBL
Match: B9RDK4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1613750 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.9e-49
Identity = 124/213 (58.22%), Postives = 141/213 (66.20%), Query Frame = 1 

Query: 10  SATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAY 69
           +AT ++  + +QPNK   RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAA+AY
Sbjct: 12  AATTAKTTNMAQPNKVAVRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAAKAY 71

Query: 70  DEAAIALRGENARTNFVS-PATGWSPDSKVSNIGV--------------LKAKLSKNLQS 129
           DEAA ALRGENARTNF S     +   S  SN G               LKAKLSKNLQS
Sbjct: 72  DEAARALRGENARTNFASVNPNSYHSGSSPSNGGFVSESDGRHSLSFSSLKAKLSKNLQS 131

Query: 130 IIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHV---- 189
           I+ART+E S+S KNRVSD FTF NIF+FRS Q     D+  I+K  VQPSIIVPH     
Sbjct: 132 IMARTTE-SRSTKNRVSDHFTFANIFHFRSQQYQKPVDMKKIEK-VVQPSIIVPHAAENH 191

Query: 190 ETDRSGSWDSSDGE------GIRPLGFSSDGSE 198
           E ++S    SS  +      G R  G  SDGS+
Sbjct: 192 ELEQSSLETSSVSDCSNEWIGFRQHGVDSDGSD 222

[Close]
BLAST of Cucsa.258020 vs. TrEMBL
Match: A0A067H4Y1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037119mg PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.8e-49
Identity = 131/231 (56.71%), Postives = 143/231 (61.90%), Query Frame = 1 

Query: 1   MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60
           MAAG ET ++ T +         K  ARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD
Sbjct: 1   MAAGSETSKNPTTTNSKGGQATTKPAARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60

Query: 61  TPEEAARAYDEAAIALRGENARTNFVSPATGWS------PDSKVSNIGV----------- 120
           TPEEAARAYDEAA ALRGENARTNF S A   +       DS  S+  V           
Sbjct: 61  TPEEAARAYDEAARALRGENARTNFASSAVNNNNNPLNHSDSGNSSPCVNGRFVAQSDGR 120

Query: 121 -------LKAKLSKNLQSIIARTSEQSK-SLKNRVSDRFTFGNIFNFRSYQSATMADLTA 180
                  LKAKLSKNLQSI+ARTSE +K S K+RVSD FTF +IF+FRSYQ  T  DL  
Sbjct: 121 NGLSFSSLKAKLSKNLQSIMARTSENNKKSTKSRVSDHFTFASIFHFRSYQYQTPVDLKN 180

Query: 181 IDKAAVQPSIIVPHV--ETDRSGSWDS----SDGE-----GIRPLGFSSDG 196
           I+K  VQPSIIVP          SW+S    SDG      G R  G  SDG
Sbjct: 181 IEK-VVQPSIIVPQAADHMHDPSSWESSSTVSDGSSTEWGGFRQHGLDSDG 230

[Close]
BLAST of Cucsa.258020 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-21
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 21 QPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGEN 80
          + +K    +FVGVRQRPSG+WVAEIKD++Q++R+WLGT++T EEAARAYDEAA  LRG N
Sbjct: 13 EKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSN 72

Query: 81 ARTNFVS 88
           RTNF +
Sbjct: 73 TRTNFAN 79

[Close]
BLAST of Cucsa.258020 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1 

Query: 5   RETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEE 64
           R  K  +TVS  +S +    +  ++F GVRQRP G+W AEI+D  +RVRLWLGTY+T EE
Sbjct: 98  RAVKSESTVSPVVS-ATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEE 157

Query: 65  AARAYDEAAIALRGENARTNF-VSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTSEQS 124
           AA  YD AAI LRG +A TNF V+P T  + + K      +K K  KN +S  + T+  S
Sbjct: 158 AAMVYDNAAIQLRGPDALTNFSVTPTT--ATEKKAPPPSPVKKKKKKNNKSKKSVTASSS 216

Query: 125 KS 126
            S
Sbjct: 218 IS 216

[Close]
BLAST of Cucsa.258020 vs. TAIR10
Match: AT1G36060.1 (AT1G36060.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 6.3e-18
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1 

Query: 26  PARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGENARTNF 85
           PA+ + GVRQR  G+WVAEI+    R RLWLGT+DT EEAA AYD AA  LRG++AR NF
Sbjct: 139 PAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNF 198

Query: 86  --VSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTSEQ 123
             +   TG SP S     G ++A +   L++I+A    Q
Sbjct: 199 PALRYQTGSSP-SDTGEYGPIQAAVDAKLEAILAEPKNQ 236

[Close]
BLAST of Cucsa.258020 vs. TAIR10
Match: AT4G11140.1 (AT4G11140.1 cytokinin response factor 1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 28  RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAAIALRGENARTNFVS 87
           R+F GVRQRP G+W AEI+D S+RVR+WLGT+DT EEAA  YD AAI LRG NA  NF  
Sbjct: 85  RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPP 144

Query: 88  P 89
           P
Sbjct: 145 P 145

[Close]
BLAST of Cucsa.258020 vs. TAIR10
Match: AT5G53290.1 (AT5G53290.1 cytokinin response factor 3)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-16
Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 1 

Query: 12  TVSRCISHSQPNKSPA-----RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAA 71
           T S   S  +PN   +     ++F GVRQRP G+W AEI+D  QR R+WLGT++T EEAA
Sbjct: 102 TQSPASSRQRPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAA 161

Query: 72  RAYDEAAIALRGENARTNFVSP 89
             YD AAI LRG +A TNF  P
Sbjct: 162 VVYDNAAIRLRGPDALTNFSIP 183

[Close]
BLAST of Cucsa.258020 vs. NCBI nr
Match: gi|449433103|ref|XP_004134337.1| (PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 8.1e-108
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1 

Query: 1   MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60
           MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD
Sbjct: 1   MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60

Query: 61  TPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTS 120
           TPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTS
Sbjct: 61  TPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTS 120

Query: 121 EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDS 180
           EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDS
Sbjct: 121 EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDS 180

Query: 181 SDGEGIRPLGFSSDGSEVAGD 202
           SDGEGIRPLGFSSDGSEVAGD
Sbjct: 181 SDGEGIRPLGFSSDGSEVAGD 201

[Close]
BLAST of Cucsa.258020 vs. NCBI nr
Match: gi|659075362|ref|XP_008438105.1| (PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis melo])

HSP 1 Score: 388.7 bits (997), Expect = 6.4e-105
Identity = 195/201 (97.01%), Postives = 197/201 (98.01%), Query Frame = 1 

Query: 1   MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60
           MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD
Sbjct: 1   MAAGRETKRSATVSRCISHSQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYD 60

Query: 61  TPEEAARAYDEAAIALRGENARTNFVSPATGWSPDSKVSNIGVLKAKLSKNLQSIIARTS 120
           TPEEAARAYDEAAIALRGENARTNFVSPA GWSPDSKVSNIGVLKAKLSKNLQSIIARTS
Sbjct: 61  TPEEAARAYDEAAIALRGENARTNFVSPAAGWSPDSKVSNIGVLKAKLSKNLQSIIARTS 120

Query: 121 EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQPSIIVPHVETDRSGSWDS 180
           EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLT IDKAAVQPSIIVPHVETD+SGSWDS
Sbjct: 121 EQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTTIDKAAVQPSIIVPHVETDQSGSWDS 180

Query: 181 SDGEGIRPLGFSSDGSEVAGD 202
           SDG+G RPLGF SDGSEVAGD
Sbjct: 181 SDGDGFRPLGFCSDGSEVAGD 201

[Close]
BLAST of Cucsa.258020 vs. NCBI nr
Match: gi|224130152|ref|XP_002320765.1| (hypothetical protein POPTR_0014s07280g [Populus trichocarpa])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 131/224 (58.48%), Postives = 149/224 (66.52%), Query Frame = 1 

Query: 1   MAAGRETKRSATVSRCISHSQPNKSPA-RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 60
           MA     + S TV+   +  Q  K P  RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY
Sbjct: 1   MAEPETLRNSPTVTT--TKVQATKGPTLRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 60

Query: 61  DTPEEAARAYDEAAIALRGENARTNF--VSPATGWSPDSKVSNIGV-------------- 120
           DTPEEAARAYDEAA ALRGENARTNF  VSP    S  S  SN G+              
Sbjct: 61  DTPEEAARAYDEAARALRGENARTNFASVSPNLNQSGSSPSSNGGLNMSESDERHGLSFS 120

Query: 121 -LKAKLSKNLQSIIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQ 180
            LKAKLSKNLQSI+ART+E +KS KNRVSD FTF NIF+FR +Q     D+ +I+K  VQ
Sbjct: 121 SLKAKLSKNLQSIMARTTE-NKSTKNRVSDHFTFANIFHFRGHQYQNPVDMKSIEK-VVQ 180

Query: 181 PSIIVPHVETDR-SGSWD-------SSDGEGIRPLGFSSDGSEV 199
           PSIIVPHV   + S SW+       S++  G R  GF SDGS++
Sbjct: 181 PSIIVPHVSDHKPSYSWETSCVSDCSNEWIGFRQHGFDSDGSDI 220

[Close]
BLAST of Cucsa.258020 vs. NCBI nr
Match: gi|743789146|ref|XP_011035387.1| (PREDICTED: uncharacterized protein LOC105133206 [Populus euphratica])

HSP 1 Score: 206.1 bits (523), Expect = 5.9e-50
Identity = 129/224 (57.59%), Postives = 149/224 (66.52%), Query Frame = 1 

Query: 1   MAAGRETKRSATVSRCISHSQPNKSPA-RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 60
           MA     + S TV+   +  Q  K P  RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY
Sbjct: 1   MAEPETLRNSPTVTT--TKVQATKGPTVRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 60

Query: 61  DTPEEAARAYDEAAIALRGENARTNF--VSPATGWSPDSKVSNIGV-------------- 120
           DTPEEAARAYDEAA ALRGENARTNF  V+P       S  SN G+              
Sbjct: 61  DTPEEAARAYDEAARALRGENARTNFASVNPNLNQYGSSPSSNGGLKMSESDGRHGLSFS 120

Query: 121 -LKAKLSKNLQSIIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQSATMADLTAIDKAAVQ 180
            LKAKLSKNLQSI+ART+E +K+ KNRVSD FTF NIF+FRS+Q     D+ +I+K  VQ
Sbjct: 121 SLKAKLSKNLQSIMARTTE-NKATKNRVSDHFTFANIFHFRSHQYQNPVDMKSIEK-VVQ 180

Query: 181 PSIIVPHVETDR-SGSWD-------SSDGEGIRPLGFSSDGSEV 199
           PSIIVPHV   + S SW+       S++  G R  GF SDGS++
Sbjct: 181 PSIIVPHVSDHKPSYSWETSCVSDCSNEWIGFRQYGFDSDGSDI 220

[Close]
BLAST of Cucsa.258020 vs. NCBI nr
Match: gi|590722573|ref|XP_007051933.1| (AP2/ERF domain-containing transcription factor [Theobroma cacao])

HSP 1 Score: 203.0 bits (515), Expect = 5.0e-49
Identity = 127/223 (56.95%), Postives = 146/223 (65.47%), Query Frame = 1 

Query: 3   AGRETKRSATVSRCISH---SQPNKSPARRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 62
           AG ET ++ T     +    SQP K   RRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY
Sbjct: 2   AGSETAKATTTGITTTDNTMSQPTKPMVRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTY 61

Query: 63  DTPEEAARAYDEAAIALRGENARTNFV-----------SPATGWSPDSKVSNIGV----L 122
           DTPEEAARAYDEAA ALRGENARTNF            SP+ G          G+    L
Sbjct: 62  DTPEEAARAYDEAARALRGENARTNFAPVNHNSSQSGSSPSNGGFVSQSDGRHGLSFSSL 121

Query: 123 KAKLSKNLQSIIARTSEQSKSLKNRVSDRFTFGNIFNFRSYQ-SATMADLTAIDKAAVQP 182
           KAKLSKNLQSI+ART+E +KS K+RVSD FTF +IF+FR+YQ      D+  I+K  VQP
Sbjct: 122 KAKLSKNLQSIMARTTE-NKSTKSRVSDHFTFASIFHFRNYQYQNPPVDMKNIEK-VVQP 181

Query: 183 SIIVPH-VETDRSGSWDSS-------DGEGIRPLGFSSDGSEV 199
           SIIVP  V+   S +WDSS       +  G R  GF SDGS++
Sbjct: 182 SIIVPRAVDEPPSSNWDSSSVSDCSNEWVGFRQHGFDSDGSDI 222

The following BLAST results are available for this feature:
BLAST of Cucsa.258020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RA211_ARATH3.7e-2065.67Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2... [more]
CRF2_ARATH3.5e-1846.72Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE... [more]
ERF55_ARATH1.1e-1649.49Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF05... [more]
CRF1_ARATH1.9e-1667.21Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE... [more]
ERF84_ARATH3.6e-1536.84Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF08... [more]
BLAST of Cucsa.258020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8Z9_CUCSA5.6e-108100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124760 PE=4 SV=1[more]
B9IC72_POPTR8.3e-5158.48Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07280g PE=4 SV=1[more]
A0A061DTN1_THECC3.5e-4956.95AP2/ERF domain-containing transcription factor OS=Theobroma cacao GN=TCM_005425 ... [more]
B9RDK4_RICCO5.9e-4958.22Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1613750 PE=4 SV=1[more]
A0A067H4Y1_CITSI7.8e-4956.71Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037119mg PE=4 S... [more]
BLAST of Cucsa.258020 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19790.12.1e-2165.67 related to AP2 11[more]
AT4G23750.12.0e-1946.72 cytokinin response factor 2[more]
AT1G36060.16.3e-1849.49 Integrase-type DNA-binding superfamily protein[more]
AT4G11140.11.1e-1767.21 cytokinin response factor 1[more]
AT5G53290.12.0e-1652.44 cytokinin response factor 3[more]
BLAST of Cucsa.258020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433103|ref|XP_004134337.1|8.1e-108100.00PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis sativus... [more]
gi|659075362|ref|XP_008438105.1|6.4e-10597.01PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis melo][more]
gi|224130152|ref|XP_002320765.1|1.2e-5058.48hypothetical protein POPTR_0014s07280g [Populus trichocarpa][more]
gi|743789146|ref|XP_011035387.1|5.9e-5057.59PREDICTED: uncharacterized protein LOC105133206 [Populus euphratica][more]
gi|590722573|ref|XP_007051933.1|5.0e-4956.95AP2/ERF domain-containing transcription factor [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
IPR017392AP2/ERF-transcript_factor
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.258020.1Cucsa.258020.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 52..68
score: 1.6E-7coord: 30..41
score: 1.
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 29..86
score: 1.7
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 29..79
score: 1.6
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 29..91
score: 5.9
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 29..86
score: 20
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 30..85
score: 3.01
IPR017392AP2/ERF transcription factor ERF/PTI6PANTHERPTHR31194SHN SHINE , DNA BINDING / TRANSCRIPTION FACTORcoord: 27..181
score: 2.4
NoneNo IPR availablePANTHERPTHR31194:SF7SUBFAMILY NOT NAMEDcoord: 27..181
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.258020Cla021270Watermelon (97103) v1cgywmB479
Cucsa.258020Csa3G124760Cucumber (Chinese Long) v2cgycuB366
Cucsa.258020MELO3C006149Melon (DHL92) v3.5.1cgymeB439
Cucsa.258020ClCG05G001890Watermelon (Charleston Gray)cgywcgB451
Cucsa.258020CSPI03G09170Wild cucumber (PI 183967)cgycpiB383
Cucsa.258020CmaCh14G020050Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.258020CmoCh14G020660Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.258020Lsi05G020020Bottle gourd (USVL1VR-Ls)cgylsiB415
Cucsa.258020Cp4.1LG03g17040Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.258020MELO3C006149.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.258020CsaV3_3G009290Cucumber (Chinese Long) v3cgycucB387
Cucsa.258020Cla97C05G082330Watermelon (97103) v2cgywmbB452
Cucsa.258020Bhi01G000228Wax gourdcgywgoB515
Cucsa.258020Carg14808Silver-seed gourdcarcgyB0693
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.258020Melon (DHL92) v3.6.1cgymedB423
Cucsa.258020Melon (DHL92) v3.6.1cgymedB431
Cucsa.258020Silver-seed gourdcarcgyB0559
Cucsa.258020Cucumber (Chinese Long) v3cgycucB398
Cucsa.258020Watermelon (97103) v2cgywmbB455
Cucsa.258020Cucumber (Gy14) v1cgycgyB130
Cucsa.258020Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.258020Cucurbita maxima (Rimu)cgycmaB0733
Cucsa.258020Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.258020Cucurbita moschata (Rifu)cgycmoB0722
Cucsa.258020Wild cucumber (PI 183967)cgycpiB382
Cucsa.258020Wild cucumber (PI 183967)cgycpiB393
Cucsa.258020Cucumber (Chinese Long) v2cgycuB374
Cucsa.258020Melon (DHL92) v3.5.1cgymeB429
Cucsa.258020Watermelon (Charleston Gray)cgywcgB454
Cucsa.258020Watermelon (97103) v1cgywmB477
Cucsa.258020Watermelon (97103) v1cgywmB484
Cucsa.258020Cucurbita pepo (Zucchini)cgycpeB0677
Cucsa.258020Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.258020Bottle gourd (USVL1VR-Ls)cgylsiB410