Cp4.1LG03g17040 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g17040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEthylene-responsive transcription factor RAP2-11
LocationCp4.1LG03 : 12960735 .. 12961025 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTTTACCGCCGTTGATAAGGTGGCTGTGCAGCCGACAATAATTGTGCCGCACGTTGAAACCGATCAGCCCTGTTCGTGGGACGGCAGCTCCGGCGACGGCGATGGATTCCAGCGGCTGGGTTTCAGCTCCGATGCGTCGGAGGGCGGCGGAGAATGGTGGGTGGATCAAATTTTGGGAGATGATTATCGGAATGAAGATTTGAAGAGTAAGAGATTGAGGGTTTCTTCTTCGGTGGTTGTGCCACCAACGTTCAGTGGGTCTCCCAGCTATGGTGAATATTAA

mRNA sequence

ATGGCGGATTTTACCGCCGTTGATAAGGTGGCTGTGCAGCCGACAATAATTGTGCCGCACGTTGAAACCGATCAGCCCTGTTCGTGGGACGGCAGCTCCGGCGACGGCGATGGATTCCAGCGGCTGGGTTTCAGCTCCGATGCGTCGGAGGGCGGCGGAGAATGGTGGGTGGATCAAATTTTGGGAGATGATTATCGGAATGAAGATTTGAAGAGTAAGAGATTGAGGGTTTCTTCTTCGGTGGTTGTGCCACCAACGTTCAGTGGGTCTCCCAGCTATGGTGAATATTAA

Coding sequence (CDS)

ATGGCGGATTTTACCGCCGTTGATAAGGTGGCTGTGCAGCCGACAATAATTGTGCCGCACGTTGAAACCGATCAGCCCTGTTCGTGGGACGGCAGCTCCGGCGACGGCGATGGATTCCAGCGGCTGGGTTTCAGCTCCGATGCGTCGGAGGGCGGCGGAGAATGGTGGGTGGATCAAATTTTGGGAGATGATTATCGGAATGAAGATTTGAAGAGTAAGAGATTGAGGGTTTCTTCTTCGGTGGTTGTGCCACCAACGTTCAGTGGGTCTCCCAGCTATGGTGAATATTAA

Protein sequence

MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQILGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY
Homology
[Close]
BLAST of Cp4.1LG03g17040 vs. TrEMBL
Match: A0A0A0L8Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124760 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-30
Identity = 69/95 (72.63%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MAD TA+DK AVQP+IIVPHVETD+  SWD S  DG+G + LGFSSD SE  G+WWVD+I
Sbjct: 150 MADLTAIDKAAVQPSIIVPHVETDRSGSWDSS--DGEGIRPLGFSSDGSEVAGDWWVDRI 209

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 96
           L DD  NE L SKR RVSSSVVVPPTFSGSP+YGE
Sbjct: 210 LEDDCYNEGLMSKRFRVSSSVVVPPTFSGSPTYGE 242

[Close]
BLAST of Cp4.1LG03g17040 vs. TrEMBL
Match: A5BB59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011417 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 3   DFTAVDKVAVQPTIIVPHVETDQPCSWDGSS-----GDGDGFQRLGFSSDASEGGG---- 62
           D  +++KV VQP+IIVPHV  D+P SW+ SS      +  GF++ G  SD S+ G     
Sbjct: 238 DMKSMEKV-VQPSIIVPHV-ADEP-SWESSSVSDCSTEWVGFRQHGLDSDGSDIGEISAS 297

Query: 63  -EWWVDQILG-------DDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 96
            + +VDQ++G           +E  +SKR +VSSSVVVPPTFSGSP  GE
Sbjct: 298 EQGFVDQMMGWIDSPELSISTSEVSRSKRFKVSSSVVVPPTFSGSPYNGE 344

[Close]
BLAST of Cp4.1LG03g17040 vs. TrEMBL
Match: B9IC72_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07280g PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-08
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 1 

Query: 3   DFTAVDKVAVQPTIIVPHVETDQPC-SWDGS-----SGDGDGFQRLGFSSDASEGGGEW- 62
           D  +++KV VQP+IIVPHV   +P  SW+ S     S +  GF++ GF SD S+ G    
Sbjct: 167 DMKSIEKV-VQPSIIVPHVSDHKPSYSWETSCVSDCSNEWIGFRQHGFDSDGSDIGEVLS 226

Query: 63  ---------WVDQ-----ILGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSY 94
                    WVD        GD       +SKRL+VSSSVVVPPTF+GSPS+
Sbjct: 227 TVNADQMIGWVDSPDINTCCGDPCS----RSKRLKVSSSVVVPPTFNGSPSF 273

[Close]
BLAST of Cp4.1LG03g17040 vs. TrEMBL
Match: A0A067JXK0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14462 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 7   VDKVAVQPTIIVPHVETDQPCSWDGSS-----GDGDGFQRLGFSSDASE------GGGEW 66
           ++KV VQP+IIVPH   D+P SW+ SS      +  GF++LG  SD S+      G G +
Sbjct: 164 IEKV-VQPSIIVPHA-ADEPSSWETSSVSDCSNEWIGFRQLGLDSDGSDIGEVSIGDGGF 223

Query: 67  ------WVDQILGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSY 94
                 W+D        NE  +SKR +VSSSVVVPPTF  SPS+
Sbjct: 224 SEQMMGWIDSPEISGCSNEGSRSKRFKVSSSVVVPPTFE-SPSF 264

[Close]
BLAST of Cp4.1LG03g17040 vs. TrEMBL
Match: M5Y2Z9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022202mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 1 

Query: 3   DFTAVDKVAVQPTIIVPH----VETDQPCSWDGSSGD------GDGFQRLGFSSDASEGG 62
           D   ++KV VQP+IIVPH      + +P SW+ SS          GF++ G  S+ SE G
Sbjct: 187 DMKNIEKV-VQPSIIVPHNGEGSTSTEPSSWESSSISDCSAEWAHGFRQAGVDSEGSEIG 246

Query: 63  GEWWVDQILG----------------DDYRNEDLKSKRLRVSSSVVVPPTFS-GSP 92
               +DQ++G                DD   E  +SKR +VSSSV+VPPTFS GSP
Sbjct: 247 EGNIMDQLMGWIDSPDNQMGSRISVGDDDSEEGSRSKRFKVSSSVMVPPTFSTGSP 301

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: gi|659075362|ref|XP_008438105.1| (PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 70/95 (73.68%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MAD T +DK AVQP+IIVPHVETDQ  SWD S  DGDGF+ LGF SD SE  G+WWVD+I
Sbjct: 150 MADLTTIDKAAVQPSIIVPHVETDQSGSWDSS--DGDGFRPLGFCSDGSEVAGDWWVDRI 209

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 96
           L DD  NE L SKR RVSSSVVVPPTFSGSP+YGE
Sbjct: 210 LEDDDYNEGLMSKRFRVSSSVVVPPTFSGSPTYGE 242

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: gi|449433103|ref|XP_004134337.1| (PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 9.4e-30
Identity = 69/95 (72.63%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MAD TA+DK AVQP+IIVPHVETD+  SWD S  DG+G + LGFSSD SE  G+WWVD+I
Sbjct: 150 MADLTAIDKAAVQPSIIVPHVETDRSGSWDSS--DGEGIRPLGFSSDGSEVAGDWWVDRI 209

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 96
           L DD  NE L SKR RVSSSVVVPPTFSGSP+YGE
Sbjct: 210 LEDDCYNEGLMSKRFRVSSSVVVPPTFSGSPTYGE 242

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: gi|743789146|ref|XP_011035387.1| (PREDICTED: uncharacterized protein LOC105133206 [Populus euphratica])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 3   DFTAVDKVAVQPTIIVPHVETDQPC-SWDGS-----SGDGDGFQRLGFSSDASEGG---G 62
           D  +++KV VQP+IIVPHV   +P  SW+ S     S +  GF++ GF SD S+ G    
Sbjct: 167 DMKSIEKV-VQPSIIVPHVSDHKPSYSWETSCVSDCSNEWIGFRQYGFDSDGSDIGEVLS 226

Query: 63  EWWVDQILGDDYRNEDL---------KSKRLRVSSSVVVPPTFSGSPSY 94
               DQ++G    + D+         +SKRL+VSSSVVVPPTFSGSPS+
Sbjct: 227 TVNADQMIG-WVESPDINTCCGDPCSRSKRLKVSSSVVVPPTFSGSPSF 273

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: gi|147781798|emb|CAN65440.1| (hypothetical protein VITISV_011417 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 3   DFTAVDKVAVQPTIIVPHVETDQPCSWDGSS-----GDGDGFQRLGFSSDASEGGG---- 62
           D  +++KV VQP+IIVPHV  D+P SW+ SS      +  GF++ G  SD S+ G     
Sbjct: 238 DMKSMEKV-VQPSIIVPHV-ADEP-SWESSSVSDCSTEWVGFRQHGLDSDGSDIGEISAS 297

Query: 63  -EWWVDQILG-------DDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 96
            + +VDQ++G           +E  +SKR +VSSSVVVPPTFSGSP  GE
Sbjct: 298 EQGFVDQMMGWIDSPELSISTSEVSRSKRFKVSSSVVVPPTFSGSPYNGE 344

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: gi|731420985|ref|XP_010661581.1| (PREDICTED: ethylene-responsive transcription factor RAP2-13-like [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 3   DFTAVDKVAVQPTIIVPHVETDQPCSWDGSS-----GDGDGFQRLGFSSDASEGGG---- 62
           D  +++KV VQP+IIVPHV  D+P SW+ SS      +  GF++ G  SD S+ G     
Sbjct: 164 DMKSMEKV-VQPSIIVPHV-ADEP-SWESSSVSDCSTEWVGFRQHGLDSDGSDIGEISAS 223

Query: 63  -EWWVDQILG-------DDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 96
            + +VDQ++G           +E  +SKR +VSSSVVVPPTFSGSP  GE
Sbjct: 224 EQGFVDQMMGWIDSPELSISTSEVSRSKRFKVSSSVVVPPTFSGSPYNGE 270

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g17040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g17040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8Z9_CUCSA6.5e-3072.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124760 PE=4 SV=1[more]
A5BB59_VITVI1.4e-0845.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011417 PE=4 SV=1[more]
B9IC72_POPTR5.4e-0843.75Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07280g PE=4 SV=1[more]
A0A067JXK0_JATCU1.6e-0744.23Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14462 PE=4 SV=1[more]
M5Y2Z9_PRUPE2.3e-0639.66Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022202mg PE=4 SV=1[more]
BLAST of Cp4.1LG03g17040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075362|ref|XP_008438105.1|3.2e-3073.68PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis melo][more]
gi|449433103|ref|XP_004134337.1|9.4e-3072.63PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis sativus... [more]
gi|743789146|ref|XP_011035387.1|1.6e-0844.95PREDICTED: uncharacterized protein LOC105133206 [Populus euphratica][more]
gi|147781798|emb|CAN65440.1|2.0e-0845.45hypothetical protein VITISV_011417 [Vitis vinifera][more]
gi|731420985|ref|XP_010661581.1|2.0e-0845.45PREDICTED: ethylene-responsive transcription factor RAP2-13-like [Vitis vinifera... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g17040.1Cp4.1LG03g17040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g17040Cucsa.258020Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g17040CmaCh14G020050Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g17040CmoCh14G020660Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g17040Cla021270Watermelon (97103) v1cpewmB613
Cp4.1LG03g17040Csa3G124760Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g17040MELO3C006149Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g17040ClCG05G001890Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g17040CSPI03G09170Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g17040Lsi05G020020Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g17040MELO3C006149.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g17040CsaV3_3G009290Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g17040Bhi01G000228Wax gourdcpewgoB0774
Cp4.1LG03g17040CsGy3G009250Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g17040Carg14808Silver-seed gourdcarcpeB0884
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g17040Melon (DHL92) v3.6.1cpemedB655
Cp4.1LG03g17040Silver-seed gourdcarcpeB0685
Cp4.1LG03g17040Cucumber (Chinese Long) v3cpecucB0785
Cp4.1LG03g17040Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g17040Cucumber (Gy14) v1cgycpeB0965
Cp4.1LG03g17040Cucurbita maxima (Rimu)cmacpeB402
Cp4.1LG03g17040Cucurbita maxima (Rimu)cmacpeB639
Cp4.1LG03g17040Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g17040Cucurbita moschata (Rifu)cmocpeB364
Cp4.1LG03g17040Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g17040Wild cucumber (PI 183967)cpecpiB633
Cp4.1LG03g17040Cucumber (Chinese Long) v2cpecuB629
Cp4.1LG03g17040Bottle gourd (USVL1VR-Ls)cpelsiB482
Cp4.1LG03g17040Watermelon (Charleston Gray)cpewcgB556
Cp4.1LG03g17040Watermelon (Charleston Gray)cpewcgB565
Cp4.1LG03g17040Watermelon (97103) v1cpewmB612
Cp4.1LG03g17040Watermelon (97103) v1cpewmB625
Cp4.1LG03g17040Silver-seed gourdcarcpeB0327
Cp4.1LG03g17040Melon (DHL92) v3.5.1cpemeB552
Cp4.1LG03g17040Cucumber (Gy14) v2cgybcpeB834