Cucsa.219030 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.219030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Short hypocotyl in white light1 protein
Location	scaffold01658 : 910889 .. 913951 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTAAAGTTTATTCAGCTACGAGCTTAATCGTTGATTTTTTTTTTCTGCCTGTTTTGTTGTTGGTTTATTGTGTATCAGTACTTGTTTTTCCAGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTAAATGCTTTGAAATTTAGCCATTTTTAATGCTTTCCTTTGGTATTTCCACATGGATTTGTTTCCTCAGCAATATAGGTAGTTGTAAGCTTTTCATTGCAAAGGAGAAATTTGTGTTCGAAATTTAACCTTAATTTTGGAGATGGAATTGTTATGACGCTTTGCTTGTGCATGGCAAACGTATCAACCGAAAAAAAAAGAAAAGAGATGTCTTATGCTTCTAATTGTTGGAAGAAGCTATTCAATGGCCTCCTCTGTAGTCATACTTTCTGATAGTCAGCAAATTCAATTGGTTTAATGTTAGAGCGTTAGAGTTTTCTTTTTTCCATCTTGAAGTTCCCTCCACAAGATATTTGTAACTGTTGCTTGTTGATAAGAGTCTCTTTGCAACTCCTTTAGTATTGCTGGTTCCATGGGCTAACTCCAACTCCAATATATGTTTTGATACCGAATCCACCTCATAAACAATCTCCATTTCTTATGAACAGTTGTGATGTATTTAGTTGCTTAATTAGTTGTTAATTGCCTACTATCTACTGGACTGGATTTTAGACACTCTTTGACTTGTTGAAAAGGTGATAGGTCACCTTTGACTTGTTGTAGTATAAATAATAGCTGTTATTATTTTTATTCCAGAATATTAATAAAAAATACCCAGATTTCTTGTTTCTGTGTTAATTCTCCAATAACACACCAAGTTGTGAACCAATCTTGTCATCAGAAAACTTTTTGAAACTGGCAAGTATCTGTAAATTAACGAAATATTCAGATTGATGGCCGTCCCGTCATTTACAGGGTTCTAGTAAGAATCTTCATATGGTTAAAAGTGAACTCAGGGACTGTTTGGCCCCTAGGCGAGGCGCATTGAGGATTAGTGCACCTCTTTGAGCTTCTTTTTTGACAATTCCCTTAAAACACAAATTTGGCTGCCGTTCAATATAAAATATAATATAGTTATTTTTTTTAGCCTAATTTGAAATAAAGCATCATTGTACAATTTATACCTATGGCTAAGATTGATCTAAAGTACAAACTGAAGCAGCAGATTTCTCCTATATCTTGGTGTTGAATGACTAACATTTAACTCTTATATATCTTGGCGTTGAATGACTAATATTTAACTCTTATATATCTTTTTTTTTGTACAAGTTTCATTTCTATCCATCTATTTTGTGGTTGTGTAAATAAACATGTATATAGTGTGTGTGTGTATATGTATATTATTTCTTATACACAGTGTACCTCACAAAAAAAAACTGCGCCTTTTTTTCCACCTTGCGCCTAGGCTTCAAAGGGCCATTGTGCCTTAGTGCATATTGGGCATTTTAAAACACTGGTTAGTTGATAAATGTGAACAATAGAGATAGAGAGAAAGATCGAGTTTCTTGATAATCATAAAAAATAGAAAACGAGGGAAAGGTGAAGCTACTCGATAAATGTGCACACTTCACTAAGTTGTTTTTAACCAAACAAATCCTAAATCCTAAACGTCAGTTAGCCTTCTTTGGTTTTTATCAGTAGTGAAAGTACCAGTCTATTGCTGTGAATCAACTTCACTACCAGTCTATTGATGTGAATCAACTGAATTTTCTCGTGCTTGTAGACAGTTGACGCTAAAATATCTGCTGGCAGGATGTGAGTAAGAAAAGTCATGTCTATATGACTGGAATTTTGAAGGAAATCCAACAATATGCATCAGAGCCACTTGCCAGTAGTAATCTTAGACATACGTTAGCTTTCTTTGGGGTTTTATTTACCAACACACACAAATACTTGTGTTTTCGGAACATGACAAAACGAAAAAACCTGTATGGTATTTGACTTTTATTTTCTGTCTTCTCAGAGCTAGTGAAAAGCGCTGGTCTGTTGATGTAGATTGGTTATTGAGTTTACTAGTGGTTGTAGACAGTTTGTCTGTTGGTGTGAATTGACTATTGAGTTTTCTGGTGTTCATAGACAGTAGGTCCCTCGGGAGACTGTTCTAAAAGGGTCTGGTATGGGAAGAATAAAGAATTTCATACAAGCTGAAACTAATTAAGACTGTAATTTCTTGAGAGAGATTTTTATTTAAAAACAAATTTGTTAATGCATTCTTGTTGAAGAAGTTCTCTTTGCCAGTTTTTTTACTATAATGGTGTCCTGTAAGTAGCTGAGGGTTTGACATGGAGTGGAATTTAAATGTTTTCTTTTCCCGTTTCTATTCTTTTCTCCTTTTTTTCGTTCATCGATAGGGGTTGGTCAAATAAGGGATATTGAATGCTTGCTTTCTTTTGGATTTTCTTCCCTCTGGTTTTTTGGGTAATCTCTTGTAGGGTGTTTATTTTATTTTTATTTTTCTACATGACATCACTCTCTTCTCTTCTATTTTCAATTTTCTCAACAATGTTATCCTTCCATTTAAAGGAAAAAAATAATTCTCCTTTTATGAAGATCATACCTAATTTCCATAGTTTTCTCCTTCGTTATTACTGTATTAGGACTATTTTCATTAACTCCCTTGGCTATATGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

mRNA sequence

GGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAgaggaggaggaggaggaggaggaggacgaagatgaggaggacgaagaggaTAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

Coding sequence (CDS)

GGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

Protein sequence

GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLPPSIPTKLVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDDQHHAWTGAQPAS*

Homology

[Close]

BLAST of Cucsa.219030 vs. TrEMBL
Match: A0A0A0K2W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.6e-63
Identity = 128/150 (85.33%), Postives = 128/150 (85.33%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 60
           GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA
Sbjct: 53  GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 112

Query: 61  RKAVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRGVWIG 120
           RKAVRSVLPPSIPTKL                      VICTLGTAVFVSILIIRGVWIG
Sbjct: 113 RKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIG 172

Query: 121 ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS
Sbjct: 173 ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of Cucsa.219030 vs. TrEMBL
Match: O81894_ARATH (Putative uncharacterized protein AT4g33780 OS=Arabidopsis thaliana GN=T16L1.270 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-36
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 60
           G D+F DD R+WNR      G +E+ + EED+D+ +EEDRSLDLL+RFVEN+FRK S+RA
Sbjct: 55  GRDDFADDTRSWNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRA 114

Query: 61  RKAVRSVLPPSIPTKLVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDDQHHA 120
           RKAVRS+LP SI TKLV CTLGT VF SIL+IRG+W G+ Y+Q++R++R+ +L DD   A
Sbjct: 115 RKAVRSILPVSISTKLVACTLGTIVFTSILLIRGLWAGVAYMQESRNNRINELADDP-RA 174

Query: 121 WTGAQPAS 129
           W G QP S
Sbjct: 175 WNGMQPVS 181

[Close]

BLAST of Cucsa.219030 vs. TrEMBL
Match: A0A061E0E9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007264 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.7e-34
Identity = 80/153 (52.29%), Postives = 105/153 (68.63%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSS 60
           G DN VD  RNW RS   +FD    E +E+E+EDEDE+++EDRSLDLL+RFV+N+FRK S
Sbjct: 53  GTDNLVDGPRNWGRSITSEFD-DDQEGDEDEDEDEDEDEDEDRSLDLLIRFVQNVFRKIS 112

Query: 61  RRARKAVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRGV 120
           +RARKAVR+VLP SI TKL                      V+CTLG+ VFVS+L+IRG+
Sbjct: 113 KRARKAVRAVLPVSISTKLVGFSVNGVLMLAFLWVLKAFLEVVCTLGSIVFVSVLLIRGI 172

Query: 121 WIGILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           W+G+ Y+Q++R  R+ +L DDQ  AWTG  PA+
Sbjct: 173 WMGVTYVQESRDQRINELVDDQ-RAWTGTHPAT 203

[Close]

BLAST of Cucsa.219030 vs. TrEMBL
Match: A0A0K9QRN1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148810 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-33
Identity = 81/148 (54.73%), Postives = 102/148 (68.92%), Query Frame = 1


Query: 3   DNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARK 62
           D  ++DRR W+R DFD   G E++++EEDE E++EEDRSLDLL+RFVENIFRK S+RARK
Sbjct: 53  DELINDRRKWSRFDFD---GYEDDDDEEDE-EDEEEDRSLDLLIRFVENIFRKVSKRARK 112

Query: 63  AVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRGVWIGIL 122
           AVRSVLP +I TKL                      VICTLG+AVFVSIL+IRGVW  +L
Sbjct: 113 AVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVL 172

Query: 123 YLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           YLQ+ RS  +  +DDD   +W+ AQP +
Sbjct: 173 YLQEGRSRHMNGIDDDDPPSWSRAQPVT 196

[Close]

BLAST of Cucsa.219030 vs. TrEMBL
Match: D7T3P4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00370 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 1


Query: 3   DNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARK 62
           D+ VDD RNW R+   + G   ++E+E+DED+E+EEDRSLDLLVRFV+N+F+K S+R RK
Sbjct: 57  DHLVDDPRNWTRNRSVVAGEYGDDEDEDDEDDEEEEDRSLDLLVRFVQNVFKKISKRTRK 116

Query: 63  AVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRGVWIGIL 122
           AVRSVLP  I TKL                      VICTLG+ VFVSIL+IRG+W G+ 
Sbjct: 117 AVRSVLPVPISTKLVGFSVDGVLMLTFLWVLKAFLEVICTLGSVVFVSILVIRGIWTGVS 176

Query: 123 YLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           Y+Q+ R+H   +L DD H AWTG QP +
Sbjct: 177 YVQENRNHTGNELGDD-HRAWTGTQPTT 203

[Close]

BLAST of Cucsa.219030 vs. TAIR10
Match: AT4G33780.1 (AT4G33780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 147.1 bits (370), Expect = 7.3e-36
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 60
           G D+F DD R+WNR      G +E+ + EED+D+ +EEDRSLDLL+RFVEN+FRK S+RA
Sbjct: 55  GRDDFADDTRSWNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRA 114

Query: 61  RKAVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRGVWIG 120
           RKAVRS+LP SI TKL                      V CTLGT VF SIL+IRG+W G
Sbjct: 115 RKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAG 174

Query: 121 ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           + Y+Q++R++R+ +L DD   AW G QP S
Sbjct: 175 VAYMQESRNNRINELADDP-RAWNGMQPVS 203

[Close]

BLAST of Cucsa.219030 vs. TAIR10
Match: AT1G69935.1 (AT1G69935.1 short hypocotyl in white light1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-12
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 1


Query: 7   DDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRS 66
           DDR      ++D++   +++   +D+DEEDE + S+DLL+RF+ ++F+K S+R +KA R 
Sbjct: 64  DDRFFGGGDNYDVV--PDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRR 123

Query: 67  VLPPSIPTKL----------------------VICTLGTAVFVSILIIRGVWIGILYLQ 104
           +LP ++  +L                      VIC LG  VF  IL+IR  W    + Q
Sbjct: 124 ILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

[Close]

BLAST of Cucsa.219030 vs. NCBI nr
Match: gi|778724801|ref|XP_004136931.2| (PREDICTED: uncharacterized protein LOC101213497 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 6.6e-63
Identity = 128/150 (85.33%), Postives = 128/150 (85.33%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 60
           GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA
Sbjct: 53  GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 112

Query: 61  RKAVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRGVWIG 120
           RKAVRSVLPPSIPTKL                      VICTLGTAVFVSILIIRGVWIG
Sbjct: 113 RKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIG 172

Query: 121 ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS
Sbjct: 173 ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of Cucsa.219030 vs. NCBI nr
Match: gi|659110111|ref|XP_008455053.1| (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-58
Identity = 119/150 (79.33%), Postives = 125/150 (83.33%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 60
           GVDNFVD+RRNWNRSDFDLIGGEEEEEEEE+ED+++EEDRSLDLLVRFVEN+FRKSSRRA
Sbjct: 53  GVDNFVDERRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRA 112

Query: 61  RKAVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRGVWIG 120
           RKAVRSVLP SIPTKL                      VICTLGTAVFVSILIIRGVWIG
Sbjct: 113 RKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIG 172

Query: 121 ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           ILYLQDTRSHRL Q DDDQHHAWTGAQPAS
Sbjct: 173 ILYLQDTRSHRLEQFDDDQHHAWTGAQPAS 202

[Close]

BLAST of Cucsa.219030 vs. NCBI nr
Match: gi|3549680|emb|CAA20591.1| (putative protein [Arabidopsis thaliana])

HSP 1 Score: 159.8 bits (403), Expect = 3.1e-36
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRA 60
           G D+F DD R+WNR      G +E+ + EED+D+ +EEDRSLDLL+RFVEN+FRK S+RA
Sbjct: 55  GRDDFADDTRSWNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRA 114

Query: 61  RKAVRSVLPPSIPTKLVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDDQHHA 120
           RKAVRS+LP SI TKLV CTLGT VF SIL+IRG+W G+ Y+Q++R++R+ +L DD   A
Sbjct: 115 RKAVRSILPVSISTKLVACTLGTIVFTSILLIRGLWAGVAYMQESRNNRINELADDP-RA 174

Query: 121 WTGAQPAS 129
           W G QP S
Sbjct: 175 WNGMQPVS 181

[Close]

BLAST of Cucsa.219030 vs. NCBI nr
Match: gi|470106721|ref|XP_004289710.1| (PREDICTED: uncharacterized protein LOC101310175 [Fragaria vesca subsp. vesca])

HSP 1 Score: 159.1 bits (401), Expect = 5.3e-36
Identity = 83/154 (53.90%), Postives = 109/154 (70.78%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNR---SDFDL-IGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKS 60
           G D FVDD RNW+R   S+ D   G ++E+E+ EDED++DEEDRSLDLLVRFV+N+F+K 
Sbjct: 61  GGDGFVDDPRNWSRTINSEIDRPYGFDDEDEDAEDEDDDDEEDRSLDLLVRFVQNVFKKV 120

Query: 61  SRRARKAVRSVLPPSIPTKL----------------------VICTLGTAVFVSILIIRG 120
           S+RAR+AVRSVLP +IPTKL                      VICTLG+ VFVSIL+IRG
Sbjct: 121 SKRARRAVRSVLPVAIPTKLVGFSVNGVLLLAFLWVLKAFLEVICTLGSLVFVSILLIRG 180

Query: 121 VWIGILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 129
           +WIG+ Y+Q+ R+H++G  +D+    WTGAQPA+
Sbjct: 181 IWIGVAYVQENRNHKIGNFEDES-RPWTGAQPAT 213

[Close]

BLAST of Cucsa.219030 vs. NCBI nr
Match: gi|657962723|ref|XP_008372960.1| (PREDICTED: uncharacterized protein LOC103436315 isoform X2 [Malus domestica])

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-35
Identity = 75/132 (56.82%), Postives = 101/132 (76.52%), Query Frame = 1


Query: 1   GVDNFVDDRRNWNRSDFDLIGG----EEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKS 60
           G DN  DD R+W RS    +      E+++E++ED+++++EEDRSLDLLVRFV+N+F+K 
Sbjct: 61  GADNLADDPRSWGRSINSEVDXRYDFEDDDEDDEDDEDDEEEDRSLDLLVRFVQNVFKKV 120

Query: 61  SRRARKAVRSVLPPSIPTKLVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDD 120
           SRRAR+AVRSVLP SIPTKLV+CTLG+ VFVSIL+IRG+W G+ Y QD R+ +    +DD
Sbjct: 121 SRRARRAVRSVLPVSIPTKLVVCTLGSLVFVSILLIRGIWTGVAYYQDNRNQKPRNFEDD 180

Query: 121 QHHAWTGAQPAS 129
            +  W GAQPA+
Sbjct: 181 -NRPWAGAQPAT 191

The following BLAST results are available for this feature:

BLAST of Cucsa.219030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2W4_CUCSA	4.6e-63	85.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070780 PE=4 SV=1	[more]
O81894_ARATH	2.2e-36	60.16	Putative uncharacterized protein AT4g33780 OS=Arabidopsis thaliana GN=T16L1.270 ...	[more]
A0A061E0E9_THECC	7.7e-34	52.29	Uncharacterized protein OS=Theobroma cacao GN=TCM_007264 PE=4 SV=1	[more]
A0A0K9QRN1_SPIOL	1.7e-33	54.73	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148810 PE=4 SV=1	[more]
D7T3P4_VITVI	2.2e-33	52.03	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00370 PE=4 SV=...	[more]

BLAST of Cucsa.219030 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33780.1	7.3e-36	51.33	FUNCTIONS IN: molecular_function unknown	[more]
AT1G69935.1	4.3e-12	32.77	short hypocotyl in white light1	[more]

BLAST of Cucsa.219030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724801\|ref\|XP_004136931.2\|	6.6e-63	85.33	PREDICTED: uncharacterized protein LOC101213497 [Cucumis sativus]	[more]
gi\|659110111\|ref\|XP_008455053.1\|	2.2e-58	79.33	PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]	[more]
gi\|3549680\|emb\|CAA20591.1\|	3.1e-36	60.16	putative protein [Arabidopsis thaliana]	[more]
gi\|470106721\|ref\|XP_004289710.1\|	5.3e-36	53.90	PREDICTED: uncharacterized protein LOC101310175 [Fragaria vesca subsp. vesca]	[more]
gi\|657962723\|ref\|XP_008372960.1\|	2.6e-35	56.82	PREDICTED: uncharacterized protein LOC103436315 isoform X2 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.219030.1	Cucsa.219030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35474	FAMILY NOT NAMED	coord: 3..128 score: 7.4
None	No IPR available	PANTHER	PTHR35474:SF1	SUBFAMILY NOT NAMED	coord: 3..128 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.219030	Cla001614	Watermelon (97103) v1	cgywmB427
Cucsa.219030	Csa7G070780	Cucumber (Chinese Long) v2	cgycuB322
Cucsa.219030	MELO3C018531	Melon (DHL92) v3.5.1	cgymeB379
Cucsa.219030	ClCG02G007130	Watermelon (Charleston Gray)	cgywcgB396
Cucsa.219030	CSPI07G06730	Wild cucumber (PI 183967)	cgycpiB336
Cucsa.219030	CmaCh11G016920	Cucurbita maxima (Rimu)	cgycmaB0620
Cucsa.219030	CmaCh19G005400	Cucurbita maxima (Rimu)	cgycmaB0624
Cucsa.219030	CmoCh19G005540	Cucurbita moschata (Rifu)	cgycmoB0627
Cucsa.219030	CmoCh11G014280	Cucurbita moschata (Rifu)	cgycmoB0624
Cucsa.219030	Lsi03G005990	Bottle gourd (USVL1VR-Ls)	cgylsiB367
Cucsa.219030	Cp4.1LG15g04310	Cucurbita pepo (Zucchini)	cgycpeB0594
Cucsa.219030	Cp4.1LG04g07520	Cucurbita pepo (Zucchini)	cgycpeB0602
Cucsa.219030	MELO3C018531.2	Melon (DHL92) v3.6.1	cgymedB377
Cucsa.219030	CsaV3_7G007690	Cucumber (Chinese Long) v3	cgycucB342
Cucsa.219030	Cla97C02G033970	Watermelon (97103) v2	cgywmbB395
Cucsa.219030	Carg16318	Silver-seed gourd	carcgyB0524
Cucsa.219030	Carg23045	Silver-seed gourd	carcgyB0825

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.219030	Melon (DHL92) v3.6.1	cgymedB378
Cucsa.219030	Melon (DHL92) v3.6.1	cgymedB381
Cucsa.219030	Silver-seed gourd	carcgyB0221
Cucsa.219030	Silver-seed gourd	carcgyB0344
Cucsa.219030	Cucumber (Chinese Long) v3	cgycucB336
Cucsa.219030	Cucumber (Chinese Long) v3	cgycucB339
Cucsa.219030	Cucumber (Chinese Long) v3	cgycucB340
Cucsa.219030	Watermelon (97103) v2	cgywmbB393
Cucsa.219030	Watermelon (97103) v2	cgywmbB398
Cucsa.219030	Wax gourd	cgywgoB443
Cucsa.219030	Wax gourd	cgywgoB445
Cucsa.219030	Wax gourd	cgywgoB452
Cucsa.219030	Cucumber (Gy14) v1	cgycgyB118
Cucsa.219030	Cucumber (Gy14) v1	cgycgyB119
Cucsa.219030	Cucurbita maxima (Rimu)	cgycmaB0623
Cucsa.219030	Cucurbita maxima (Rimu)	cgycmaB0629
Cucsa.219030	Cucurbita moschata (Rifu)	cgycmoB0625
Cucsa.219030	Cucurbita moschata (Rifu)	cgycmoB0632
Cucsa.219030	Wild cucumber (PI 183967)	cgycpiB331
Cucsa.219030	Wild cucumber (PI 183967)	cgycpiB334
Cucsa.219030	Cucumber (Chinese Long) v2	cgycuB318
Cucsa.219030	Cucumber (Chinese Long) v2	cgycuB321
Cucsa.219030	Melon (DHL92) v3.5.1	cgymeB380
Cucsa.219030	Melon (DHL92) v3.5.1	cgymeB382
Cucsa.219030	Melon (DHL92) v3.5.1	cgymeB383
Cucsa.219030	Watermelon (Charleston Gray)	cgywcgB393
Cucsa.219030	Watermelon (Charleston Gray)	cgywcgB399
Cucsa.219030	Watermelon (97103) v1	cgywmB421
Cucsa.219030	Watermelon (97103) v1	cgywmB422
Cucsa.219030	Cucurbita pepo (Zucchini)	cgycpeB0592
Cucsa.219030	Cucurbita pepo (Zucchini)	cgycpeB0599
Cucsa.219030	Cucurbita pepo (Zucchini)	cgycpeB0603
Cucsa.219030	Bottle gourd (USVL1VR-Ls)	cgylsiB366
Cucsa.219030	Bottle gourd (USVL1VR-Ls)	cgylsiB370