CmoCh19G005540 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G005540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionshort hypocotyl in white light1
LocationCmo_Chr19 : 6388975 .. 6393012 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCTTAACTCAATCCTCTGTGACAGTTAACCATCGCCGGGCAATACTATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCCAACCTCTCGAACCTGGCTTCTCTCCCATCCCTTCCAGGTTTCTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGTTCATCGGATTTCTCTTCCCATTTATTGACCTTTTTTTCGTGTGTTTTTGCTCTCAATCTGCTCGATTGTGTTCCAGGGAGTTGATGATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTGGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTAGAAGTTTATTGAGTTTGTTTAAGCTTAATCATTGACTTTTTCTTTTTCTGTACTGTTGTTGATCAATTGTGTATTAGTGATTGGTTTTTCAGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTAAATACATCGATTTCATGTGTTTTCTTTGCTATTTCCATATGGATTTGTTACCTCGGGAATGTATGGATAGTTGTAAGCTTCTCATTGCAAAAGAGAATTGTGTATTGAAATTCAACCAAAATAATGCTGCTGGAACTGTCATGACACTTGATAACTTGGTTATGCGTGGCAAACCTCAACCAAGAAAAAATAAATGTGAGATTGCACGTTAGTTGGAGAGGGGAACGAAACATTTTTTATAAAGGTGTAGAAACCTTTTCCTAGCATACGCGTTTTAAAACCGTGAGGTATCTCAGACAATATCTGCCAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCCGTCATCAGGCGGTGTGCCAACAAGGACGCTGGCTCCTAAGGGGGTGGATTGTGAGATCCCACCTCGGTTGGAGAGGGGAACGAAACATTCCTTATTAATGTGTGGAAACCTTTCCCTAGAAGACGTGTTTTAAAACTGTGAGGCTTACGATGATACGTAATGGGGCAAAGTAGACAATATCTACGGCGATATGTAACGGGCCAAAGCAGACAATATCTGCTAGCGGTGGACTTGGGTTGTTACAAATGGTATCAGAGCTAGTCACCGAGTGGTGTGCCAGTGAGGACGCTAGCCCCCCTAGGGAGGTAGATTGTGAGAACTCACATCGGTTGGAGAGGGAAACGAAGCAAGAAAACTTTTTGAAAACGGTGAGTATCTCTTAGTAGGGCTTCATTTGTACGATTCTAGTTAGAATCTTTATCATTTCTAAATCAATACAAGGTTCTCTTATTGTAATTGCCCAAGCCCACAGCAAGTAGATATTGTTCTCTTTGGGCTTTTCCTTTCGAACTTCTTCTCAAGGTTTTTAAAACGTGTTTGCTAGGGAGAGGTTTCCACATCCTTATAAAGAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACTCCCCTTCAAGGCCCAACGTTCTCGTTGGCACTCGTTCCCTTCTCCAATCGATGTGAGACCCCTCAATCCACCCTCTTCAGGGCCCAATGTCCTTACTAGCACACCGCCTCGTGTCCACCCCCTTCGGGGCTCAGCCTCCTCGCTAGCATATCGCCAAGTGTCTAGCTCTAATACCATTTGTAACCGCCCAAGCTCACCGCTAGTAGATATTGTCCTTTTTGGACTTTCCCTTTCATACTAGTTTTTAAAGCGCGTCTTCTAGGGAAAGGTTTCCACTAAAAATTACCATCAACCGATACGGAAACAATTTTACAAATATAAATAACAAAAACAAATATACACATAACAACACAACCAATATTACAAAAGGCATAAAGAATGAACCTATATGTTATTTGCTTTATTTGCTGTCTTTTCAGAAGTAGCAAAAGGCGCTGGCCTGTTGATGTTGATTGATTATTGAGTTTACTGGTGGTTGTGGACAGTATGCGGTAAATTTCTGTTAGAGATATAGATACTTGGAGTATGTTTATCTGTTGAAAAGCTTCCAGTGAGAACAAGTTAACCATCAGACCAAGATGTTTTACTTTTATTTACCAACACACAGAGCTCTGTTAGTAGGATATGACTATAGAGCCAATCTTGGTGATATTTGGCTTTGTTCATCATGAAAGGTACTGGTCTGTTAGTACGGATTGACTATCGAGTTTGCAGGTGTTTGTAGACAGTCGATCTTTGAAGAGACGGTCTTAAAAAAGGGTCTGTTCTAGGAAGAACAGAGAACTTCATACAAGTTGATCCTAATTAAGATCAAAAGGAAGATACTGGAATTTCTCGAGACAGATTTGAATGAAAAGACAAATTTGTTAACGCATTCTTGTTAAGAGTCGAGAGGGGTTGATCTGAGATCGGATCTAGAGTGCATTCCTAAAACGGCTCAAGCCCATCGCTAGTAGATATTGTCCTCTTTGGACTTTCCCTTTTGGGTTTCCCTTCAAGATTTTTAAAATACGTCTGCTAGGGAGAGGTTTCCACACCTTTAGAAGGAATGTTTCGTTCTTCTCTCCAACCGACGTGGGATCTCACAATACACCCCTCTTGGGGGCGCCCAACGTCCTCGCGGGCACACTGCTCGGTGTCTGACTCTAATACCATTTGTAACAGTCTAAGCCCACCACTAGTATATATTGTCCCTTTTGGGCTTCCCCTCAACGTTTTAAAACACGTCTATTAGGGAGAGGTTTCCACACCCTTATAAGAAAAGTTTTGTTCTTCTCTTCAACCGATATGGGAACTCACAGGAAAGAAGAAAAAAAAAAGAGAAAATTTGTGGAGGCCATACCTAATTTCCAAAGTTTCCCGAAGAGGAAAGTTCGTAAAAAATGTTAGATACCACTTTCCCCTACCTCTCGACTCTTCTCACTAACGAACTGCCTGTGCTGCTATGTGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTGCTTATAACTTGCAAGGTTAGTGATACCACCAATAGCTTAGAATAATGGGCCTTCATGTTTATCTCATTTTGATCTGTAAATTCTTGTTCTTGTTCTTGTTCTCTGTGTTCGTATAGAAAGGTGTTTTAATCCATAAGTGTTTGAAACCTTCAATCCAGTAATGGGTTATGTGTTGGTTTGGTCTCTTTTCCAAGTTTATAAACTTACTGTTGATGCACGTGTAAGGCAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTAGAAAACGTTCCTTTTGATAAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAAGATGAATTGATAGAGACGTAGTATGAACATGGAGGAACTTTACGATAACGAAGTGAGAACAATGTGTTTGATCGAGCATTGTTAAAAGGCATATAGATGGTCAATATAATTTTTGCTATAGTTTGTAACTCGATATAGAATACCATCTTACTTGTGAGATAAGCTTTATAGTCGAGAGGGAAACAACTCAGATCATCGAGTCCTCCTCCCTCATATGTATCCACTCTTATCATTATCTTTCCTTGAACAACTTCAACTTTTCTCCTTATGCTTTTACCTTGTTCTTTTTCTTTATGTCTTGCTCATGTTCACACATTTTACTTAAATTGTAAAAAAAACTAAACGAGCCACACATACCCAATTTTCAATATAGTCTAAATTGAAGAATAAGATATTCCTCTAAAAGATTTTGGACCTAACCTTGATCG

mRNA sequence

AATCCTTAACTCAATCCTCTGTGACAGTTAACCATCGCCGGGCAATACTATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCCAACCTCTCGAACCTGGCTTCTCTCCCATCCCTTCCAGGTTTCTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATGATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTGGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTGCTTATAACTTGCAAGGTTAGTGATACCACCAATAGCTTAGAATAATGGGCCTTCATGTTTATCTCATTTTGATCTGTAAATTCTTGTTCTTGTTCTTGTTCTCTGTGTTCGTATAGAAAGGTGTTTTAATCCATAAGTGTTTGAAACCTTCAATCCAGTAATGGGTTATGTGTTGGTTTGGTCTCTTTTCCAAGTTTATAAACTTACTGTTGATGCACGTGTAAGGCAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTAGAAAACGTTCCTTTTGATAAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAAGATGAATTGATAGAGACGTAGTATGAACATGGAGGAACTTTACGATAACGAAGTGAGAACAATGTGTTTGATCGAGCATTGTTAAAAGGCATATAGATGGTCAATATAATTTTTGCTATAGTTTGTAACTCGATATAGAATACCATCTTACTTGTGAGATAAGCTTTATAGTCGAGAGGGAAACAACTCAGATCATCGAGTCCTCCTCCCTCATATGTATCCACTCTTATCATTATCTTTCCTTGAACAACTTCAACTTTTCTCCTTATGCTTTTACCTTGTTCTTTTTCTTTATGTCTTGCTCATGTTCACACATTTTACTTAAATTGTAAAAAAAACTAAACGAGCCACACATACCCAATTTTCAATATAGTCTAAATTGAAGAATAAGATATTCCTCTAAAAGATTTTGGACCTAACCTTGATCG

Coding sequence (CDS)

ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCCAACCTCTCGAACCTGGCTTCTCTCCCATCCCTTCCAGGTTTCTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATGATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTGGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGA
Homology
[Close]
BLAST of CmoCh19G005540 vs. TrEMBL
Match: A0A0A0K2W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.9e-81
Identity = 171/205 (83.41%), Postives = 179/205 (87.32%), Query Frame = 1 

Query: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60
           MSL A  SPPSLF++PQ Q PF TS T LLSHP  +S+ LLRA+RR SNFSQGVD+ VDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEEEEEDEDE--EEDRSLDLLVQFVENVFRKVSRRARKAVR 120
           RRNWN S   DFDLIGGEEEEEEEEDEDE  EEDRSLDLLV+FVEN+FRK SRRARKAVR
Sbjct: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120

Query: 121 SVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DIRSHRLDQLDDDQPHAWTGAQPAS 204
           D RSHRL QLDDDQ HAWTGAQPAS
Sbjct: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 202

[Close]
BLAST of CmoCh19G005540 vs. TrEMBL
Match: A0A061E0E9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007264 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.6e-52
Identity = 125/208 (60.10%), Postives = 154/208 (74.04%), Query Frame = 1 

Query: 1   MSLLAARSPPSLFAVPQYQPP---FPTSRTWLL-SHPFQVSHALLRASRRASNFSQGVDD 60
           MS     SP  L   P  +PP   F   +  LL +H FQ    LL ASRR  NF QG D+
Sbjct: 1   MSSTVTLSPTFLAGFPYRKPPSHFFSNPKILLLKTHSFQ----LLLASRRIPNFPQGTDN 60

Query: 61  PVDDRRNWNGSIGSDFDLIG-GEEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARK 120
            VD  RNW  SI S+FD    G+E+E+E+EDEDE+EDRSLDLL++FV+NVFRK+S+RARK
Sbjct: 61  LVDGPRNWGRSITSEFDDDQEGDEDEDEDEDEDEDEDRSLDLLIRFVQNVFRKISKRARK 120

Query: 121 AVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGIL 180
           AVR+VLP SI TKLVGF VNGVLMLAFLWVLKAFLEV+CTLG+ VFVS+L+IRG+W+G+ 
Sbjct: 121 AVRAVLPVSISTKLVGFSVNGVLMLAFLWVLKAFLEVVCTLGSIVFVSVLLIRGIWMGVT 180

Query: 181 YLQDIRSHRLDQLDDDQPHAWTGAQPAS 204
           Y+Q+ R  R+++L DDQ  AWTG  PA+
Sbjct: 181 YVQESRDQRINELVDDQ-RAWTGTHPAT 203

[Close]
BLAST of CmoCh19G005540 vs. TrEMBL
Match: V4RNQ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029333mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-51
Identity = 117/172 (68.02%), Postives = 140/172 (81.40%), Query Frame = 1 

Query: 32  HPFQVSHALLRASRRASNFSQGVDDPVDDRRNWNGSIGSDFDLIGGEEEEEEEEDEDEEE 91
           HPFQ  + L RASRR+SN SQ  D+ V+D RNWN +I  +FD     + +++E+DE EEE
Sbjct: 28  HPFQKIYPL-RASRRSSNISQVNDNFVEDPRNWNHAIAREFD-----DYDDDEDDEAEEE 87

Query: 92  DRSLDLLVQFVENVFRKVSRRARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLE 151
           DRSLDLLV+FVENVF+KVSR+ARKAVRSVLPQSI   LVGF VNGVL+LAFLWVLKAFLE
Sbjct: 88  DRSLDLLVKFVENVFKKVSRKARKAVRSVLPQSISKNLVGFSVNGVLILAFLWVLKAFLE 147

Query: 152 VICTLGTAVFVSILIIRGVWIGILYLQDIRSHRLDQLDDDQPHAWTGAQPAS 204
           V+CTLGT VFVSIL+IRGVW G+ YLQ+ R+HR+D LD + P AW GAQPA+
Sbjct: 148 VVCTLGTVVFVSILLIRGVWTGVTYLQESRTHRVDDLDAENP-AWRGAQPAA 192

[Close]
BLAST of CmoCh19G005540 vs. TrEMBL
Match: A0A0B0NWW4_GOSAR (ATP phosphoribosyltransferase regulatory subunit OS=Gossypium arboreum GN=F383_00468 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.9e-48
Identity = 116/208 (55.77%), Postives = 148/208 (71.15%), Query Frame = 1 

Query: 1   MSLLAARSPPSLFAVPQYQPP---FPTSRTWLL--SHPFQVSHALLRASRRASNFSQGVD 60
           MS     SPP L   P  +PP   F  +   L   SH FQ     L ASRR  N+ QG+D
Sbjct: 1   MSFTVNYSPPFLTIFPNKKPPPFHFSCNPKTLRFKSHSFQP----LLASRRIPNYPQGID 60

Query: 61  DPVDDRRNWNGSIGSDFDLIGGEEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARK 120
           + VD  RNW+ SI S+FD       ++EE+D++EEEDRSLDLLV+FV+NVFRK+S+RARK
Sbjct: 61  NLVDGPRNWSRSITSEFD-------DDEEDDDEEEEDRSLDLLVRFVQNVFRKISKRARK 120

Query: 121 AVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGIL 180
           A+R++LP SI TKLVGF V+GVL+LAFLWVLKAFLEV+CTLG+AVFV+IL+IRG+W G+ 
Sbjct: 121 ALRAILPISISTKLVGFSVDGVLILAFLWVLKAFLEVVCTLGSAVFVTILLIRGIWTGVT 180

Query: 181 YLQDIRSHRLDQLDDDQPHAWTGAQPAS 204
           ++Q+ R HR      D P +W GAQPA+
Sbjct: 181 FMQESRDHRRINEPFDDPRSWNGAQPAT 197

[Close]
BLAST of CmoCh19G005540 vs. TrEMBL
Match: A0A0D2NH99_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G229700 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.5e-47
Identity = 114/208 (54.81%), Postives = 147/208 (70.67%), Query Frame = 1 

Query: 1   MSLLAARSPPSLFAVPQYQPP---FPTSRTWL--LSHPFQVSHALLRASRRASNFSQGVD 60
           MS     SPP L   P  +PP   F  +   L   SH FQ     L ASRR  N+ QG+D
Sbjct: 445 MSFTVNHSPPFLTIFPNKKPPPFHFSCNPKTLPFKSHSFQP----LLASRRIPNYPQGID 504

Query: 61  DPVDDRRNWNGSIGSDFDLIGGEEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARK 120
           + VD  RNW+ SI S+FD       ++EE+D++EEEDRSLDL V+FV+NVFRK+S+RARK
Sbjct: 505 NLVDGPRNWSRSITSEFD-------DDEEDDDEEEEDRSLDLFVRFVQNVFRKISKRARK 564

Query: 121 AVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGIL 180
           A+R++LP SI TKLVGF V+GVL+LAFLWVLKAFLEV+CTLG+AVFV+IL+IRG+W G+ 
Sbjct: 565 ALRAILPISISTKLVGFSVDGVLILAFLWVLKAFLEVVCTLGSAVFVTILLIRGIWTGVT 624

Query: 181 YLQDIRSHRLDQLDDDQPHAWTGAQPAS 204
           ++Q+ R HR      + P +W GAQPA+
Sbjct: 625 FMQESRDHRRINEPFNDPRSWNGAQPAT 641

[Close]
BLAST of CmoCh19G005540 vs. TAIR10
Match: AT4G33780.1 (AT4G33780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-47
Identity = 113/204 (55.39%), Postives = 143/204 (70.10%), Query Frame = 1 

Query: 2   SLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDDR 61
           S+   RSP S F        F  +RT +   P+        ASRR+ +F  G DD  DD 
Sbjct: 13  SVALLRSPLSFFIFTPKTLIF--TRTRISGFPYL-------ASRRSRDFINGRDDFADDT 72

Query: 62  RNWNGSIGSDFDLIGGEEEEEEEEDED--EEEDRSLDLLVQFVENVFRKVSRRARKAVRS 121
           R+WN  I  ++   G +E+ + EED+D  EEEDRSLDLL++FVENVFRK+S+RARKAVRS
Sbjct: 73  RSWNRKIKPEY---GFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARKAVRS 132

Query: 122 VLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 181
           +LP SI TKLVGF VNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q+
Sbjct: 133 ILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQE 192

Query: 182 IRSHRLDQLDDDQPHAWTGAQPAS 204
            R++R+++L DD P AW G QP S
Sbjct: 193 SRNNRINELADD-PRAWNGMQPVS 203

[Close]
BLAST of CmoCh19G005540 vs. TAIR10
Match: AT1G69935.1 (AT1G69935.1 short hypocotyl in white light1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-17
Identity = 62/183 (33.88%), Postives = 103/183 (56.28%), Query Frame = 1 

Query: 2   SLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRR------ASNFSQGVD 61
           +L ++ S PSL  +         S  ++   PF  +   LR   R      AS+ S    
Sbjct: 7   TLSSSSSSPSLTLIN-------ASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRR 66

Query: 62  DPVDDRRNWNGSIGSDFDLIGGEEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARK 121
               D R + G  G ++D++  ++   +++DE++E + S+DLL++F+ ++F+KVS+R +K
Sbjct: 67  RYESDDRFFGG--GDNYDVVPDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKK 126

Query: 122 AVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGIL 179
           A R +LP ++  +LV F V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    
Sbjct: 127 ASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAAS 180

[Close]
BLAST of CmoCh19G005540 vs. NCBI nr
Match: gi|659110111|ref|XP_008455053.1| (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 7.4e-85
Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 1 

Query: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60
           MSL A  SPPSLF++PQ QPPFPTSRT LLSHPFQ+S+ LLRA+RR SNFSQGVD+ VD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEEEEE--DEDEEEDRSLDLLVQFVENVFRKVSRRARKAVR 120
           RRNWN S   DFDLIGGEEEEEEEE  D+DEEEDRSLDLLV+FVENVFRK SRRARKAVR
Sbjct: 61  RRNWNRS---DFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120

Query: 121 SVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DIRSHRLDQLDDDQPHAWTGAQPAS 204
           D RSHRL+Q DDDQ HAWTGAQPAS
Sbjct: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 202

[Close]
BLAST of CmoCh19G005540 vs. NCBI nr
Match: gi|778724801|ref|XP_004136931.2| (PREDICTED: uncharacterized protein LOC101213497 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 8.5e-81
Identity = 171/205 (83.41%), Postives = 179/205 (87.32%), Query Frame = 1 

Query: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60
           MSL A  SPPSLF++PQ Q PF TS T LLSHP  +S+ LLRA+RR SNFSQGVD+ VDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEEEEEDEDE--EEDRSLDLLVQFVENVFRKVSRRARKAVR 120
           RRNWN S   DFDLIGGEEEEEEEEDEDE  EEDRSLDLLV+FVEN+FRK SRRARKAVR
Sbjct: 61  RRNWNRS---DFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120

Query: 121 SVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DIRSHRLDQLDDDQPHAWTGAQPAS 204
           D RSHRL QLDDDQ HAWTGAQPAS
Sbjct: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 202

[Close]
BLAST of CmoCh19G005540 vs. NCBI nr
Match: gi|568867095|ref|XP_006486880.1| (PREDICTED: uncharacterized protein LOC102621139 [Citrus sinensis])

HSP 1 Score: 215.3 bits (547), Expect = 9.8e-53
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 1 

Query: 32  HPFQVSHALLRASRRASNFSQGVDDPVDDRRNWNGSIGSDFDLIGGEEEEEEEEDEDEEE 91
           HPFQ  + L RASRR+SNFSQ  D+ V+D RNWN +I  +FD     + +++E+DE EEE
Sbjct: 28  HPFQKIYPL-RASRRSSNFSQVNDNFVEDPRNWNHAIAREFD-----DYDDDEDDEAEEE 87

Query: 92  DRSLDLLVQFVENVFRKVSRRARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLE 151
           DRSLDLLV+FVENVF+KVSR+ARKAVRSVLPQSI   LVGF VNGVL+LAFLWVLKAFLE
Sbjct: 88  DRSLDLLVKFVENVFKKVSRKARKAVRSVLPQSISKNLVGFSVNGVLILAFLWVLKAFLE 147

Query: 152 VICTLGTAVFVSILIIRGVWIGILYLQDIRSHRLDQLDDDQPHAWTGAQPAS 204
           V+CTLGT VFVSIL+IRGVW G+ YLQ+ R+HR+D LDD+ P AW GAQPA+
Sbjct: 148 VVCTLGTVVFVSILLIRGVWTGVTYLQESRTHRVDDLDDENP-AWRGAQPAA 192

[Close]
BLAST of CmoCh19G005540 vs. NCBI nr
Match: gi|590687524|ref|XP_007042688.1| (Uncharacterized protein TCM_007264 [Theobroma cacao])

HSP 1 Score: 213.4 bits (542), Expect = 3.7e-52
Identity = 125/208 (60.10%), Postives = 154/208 (74.04%), Query Frame = 1 

Query: 1   MSLLAARSPPSLFAVPQYQPP---FPTSRTWLL-SHPFQVSHALLRASRRASNFSQGVDD 60
           MS     SP  L   P  +PP   F   +  LL +H FQ    LL ASRR  NF QG D+
Sbjct: 1   MSSTVTLSPTFLAGFPYRKPPSHFFSNPKILLLKTHSFQ----LLLASRRIPNFPQGTDN 60

Query: 61  PVDDRRNWNGSIGSDFDLIG-GEEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARK 120
            VD  RNW  SI S+FD    G+E+E+E+EDEDE+EDRSLDLL++FV+NVFRK+S+RARK
Sbjct: 61  LVDGPRNWGRSITSEFDDDQEGDEDEDEDEDEDEDEDRSLDLLIRFVQNVFRKISKRARK 120

Query: 121 AVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGIL 180
           AVR+VLP SI TKLVGF VNGVLMLAFLWVLKAFLEV+CTLG+ VFVS+L+IRG+W+G+ 
Sbjct: 121 AVRAVLPVSISTKLVGFSVNGVLMLAFLWVLKAFLEVVCTLGSIVFVSVLLIRGIWMGVT 180

Query: 181 YLQDIRSHRLDQLDDDQPHAWTGAQPAS 204
           Y+Q+ R  R+++L DDQ  AWTG  PA+
Sbjct: 181 YVQESRDQRINELVDDQ-RAWTGTHPAT 203

[Close]
BLAST of CmoCh19G005540 vs. NCBI nr
Match: gi|567860188|ref|XP_006422748.1| (hypothetical protein CICLE_v10029333mg [Citrus clementina])

HSP 1 Score: 209.9 bits (533), Expect = 4.1e-51
Identity = 117/172 (68.02%), Postives = 140/172 (81.40%), Query Frame = 1 

Query: 32  HPFQVSHALLRASRRASNFSQGVDDPVDDRRNWNGSIGSDFDLIGGEEEEEEEEDEDEEE 91
           HPFQ  + L RASRR+SN SQ  D+ V+D RNWN +I  +FD     + +++E+DE EEE
Sbjct: 28  HPFQKIYPL-RASRRSSNISQVNDNFVEDPRNWNHAIAREFD-----DYDDDEDDEAEEE 87

Query: 92  DRSLDLLVQFVENVFRKVSRRARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLE 151
           DRSLDLLV+FVENVF+KVSR+ARKAVRSVLPQSI   LVGF VNGVL+LAFLWVLKAFLE
Sbjct: 88  DRSLDLLVKFVENVFKKVSRKARKAVRSVLPQSISKNLVGFSVNGVLILAFLWVLKAFLE 147

Query: 152 VICTLGTAVFVSILIIRGVWIGILYLQDIRSHRLDQLDDDQPHAWTGAQPAS 204
           V+CTLGT VFVSIL+IRGVW G+ YLQ+ R+HR+D LD + P AW GAQPA+
Sbjct: 148 VVCTLGTVVFVSILLIRGVWTGVTYLQESRTHRVDDLDAENP-AWRGAQPAA 192

The following BLAST results are available for this feature:
BLAST of CmoCh19G005540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G005540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2W4_CUCSA5.9e-8183.41Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070780 PE=4 SV=1[more]
A0A061E0E9_THECC2.6e-5260.10Uncharacterized protein OS=Theobroma cacao GN=TCM_007264 PE=4 SV=1[more]
V4RNQ0_9ROSI2.9e-5168.02Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029333mg PE=4 SV=1[more]
A0A0B0NWW4_GOSAR3.9e-4855.77ATP phosphoribosyltransferase regulatory subunit OS=Gossypium arboreum GN=F383_0... [more]
A0A0D2NH99_GOSRA2.5e-4754.81Uncharacterized protein OS=Gossypium raimondii GN=B456_005G229700 PE=4 SV=1[more]
BLAST of CmoCh19G005540 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33780.12.2e-4755.39 FUNCTIONS IN: molecular_function unknown[more]
AT1G69935.13.2e-1733.88 short hypocotyl in white light1[more]
BLAST of CmoCh19G005540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110111|ref|XP_008455053.1|7.4e-8585.37PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo][more]
gi|778724801|ref|XP_004136931.2|8.5e-8183.41PREDICTED: uncharacterized protein LOC101213497 [Cucumis sativus][more]
gi|568867095|ref|XP_006486880.1|9.8e-5369.19PREDICTED: uncharacterized protein LOC102621139 [Citrus sinensis][more]
gi|590687524|ref|XP_007042688.1|3.7e-5260.10Uncharacterized protein TCM_007264 [Theobroma cacao][more]
gi|567860188|ref|XP_006422748.1|4.1e-5168.02hypothetical protein CICLE_v10029333mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0009787 regulation of abscisic acid-activated signaling pathway
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G005540.1CmoCh19G005540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35474FAMILY NOT NAMEDcoord: 41..203
score: 3.1
NoneNo IPR availablePANTHERPTHR35474:SF1SUBFAMILY NOT NAMEDcoord: 41..203
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G005540Cucsa.219030Cucumber (Gy14) v1cgycmoB0627
CmoCh19G005540CmaCh11G016920Cucurbita maxima (Rimu)cmacmoB143
CmoCh19G005540CmaCh19G005400Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G005540Cla001614Watermelon (97103) v1cmowmB496
CmoCh19G005540Csa7G070780Cucumber (Chinese Long) v2cmocuB519
CmoCh19G005540MELO3C018531Melon (DHL92) v3.5.1cmomeB454
CmoCh19G005540ClCG02G007130Watermelon (Charleston Gray)cmowcgB459
CmoCh19G005540CSPI07G06730Wild cucumber (PI 183967)cmocpiB525
CmoCh19G005540Lsi03G005990Bottle gourd (USVL1VR-Ls)cmolsiB468
CmoCh19G005540Cp4.1LG15g04310Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G005540Cp4.1LG04g07520Cucurbita pepo (Zucchini)cmocpeB494
CmoCh19G005540MELO3C018531.2Melon (DHL92) v3.6.1cmomedB523
CmoCh19G005540CsaV3_7G007690Cucumber (Chinese Long) v3cmocucB0623
CmoCh19G005540Cla97C02G033970Watermelon (97103) v2cmowmbB512
CmoCh19G005540CsGy7G006280Cucumber (Gy14) v2cgybcmoB928
CmoCh19G005540Carg23045Silver-seed gourdcarcmoB0998
CmoCh19G005540Carg16318Silver-seed gourdcarcmoB0615
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh19G005540CmoCh11G014280Cucurbita moschata (Rifu)cmocmoB110
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G005540Watermelon (97103) v2cmowmbB505
CmoCh19G005540Wax gourdcmowgoB0635
CmoCh19G005540Wax gourdcmowgoB0642
CmoCh19G005540Cucurbita moschata (Rifu)cmocmoB395
CmoCh19G005540Melon (DHL92) v3.5.1cmomeB475
CmoCh19G005540Watermelon (Charleston Gray)cmowcgB454
CmoCh19G005540Watermelon (97103) v1cmowmB478
CmoCh19G005540Bottle gourd (USVL1VR-Ls)cmolsiB467
CmoCh19G005540Melon (DHL92) v3.6.1cmomedB550