Carg16318 (gene) Silver-seed gourd

NameCarg16318
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionATP phosphoribosyltransferase regulatory subunit
LocationCucurbita_argyrosperma_scaffold_088 : 235987 .. 239835 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCTAACCTCTCGAACCTGGATTCTCTCCCATCCCTTCCAGGTTTTTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGTTCATCGGATTTCTCTTCCCATTTATTGACCTTTTTTTCGTGTGTTTTTGCTCTCAATCTGCTCGATTGTGTTCCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTAGCCATGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGAAGATGAAGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCAAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTAGAAGTTTATTGAGTTTGTTTAAGCTTAATCATTGACTTTTTCTTTTTCTGTACTGTTGTTGATCAATTGTGTATTAGTGATTGGTTTTTCAGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTAAATACATCGATTTCATGCGTTTTCTTTGCTATTTCCATATGGATTTGTTACCTCGGCAATGTATGGATAGTTGTTAGCTTCTCATTGCAAAACAGAATTGTGTATTGAAATTCAACCAAAATAATGCTGCTGGAACTGTCATCACACTTTGCTTGATCAATTGGTTATGCGTGGCAAACCTCAACCAAGAAAAAATAAATGTGAGATTGTACGTTAGTTGGAGAGGGGAACGAAGCATTCTTTGTAAAGGTGTAGAAACCTTTTTCTAGCATACGTGTTTTAAAACCGTGAGGTATCTTAGACAATATCTGCCAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGATCCCGTCATCATGCAGTGTGCCAACAAGGACGCTGGCTCCTAAGGGGGTGGATTGTGAGATCCCACCTCGGTTGGAGAGGAGAACGAAATATTCCTTATTAATGTGTGGAAACCTTTCCCTAGAAGACGTGTTTTAAAACTGTGAGGCTTACGACGATACGTAATGGGCCAAAGTGGACAATATTTACGGCGATATGTAACGGACCAGAGCAGACAATATCTGCTAGCGGTGGACTTGAGTTGTTACAAATGGTATCAGAACTAGTCACCGAGTGGTGTGCTAGTGAGGACGCTAGCCCCCCTAAGGAGGTAGATTGTGAGAACTCTCATCGGTTGGAGAGGGAAACGAAGCAAGAAAACTTTTTGAAACCGGTGAGTATCTCTTAGTAGGGCTTCATTTGTACGATTCTAGTTAGAATCTTTATCATTTCTAAATCAATACAAGGTTCTCTTATTGTAATTGTCCAAGCCCACCGCAAGTAGATATTGTTCTCTTTGGGCTTTTCCTTTCGAACTTCTTCTCAAGGTTTTTAAAACGTGTTTGCTAGGGAGAGGTTTCCACATCCTTATAAACAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACTCCCCTTCAAGGCCCAACGTTCTCGTTGGCACTCGTTCCCTTCTCCAATCGATGTGAGACCCCCCAATCCACCCTCTTCAGGGCCCAATGTCCTTACTAGCACACCGCCTCGTGTCCACTCCCTTCGGGGCTCAGCCTCCTCGCTGGCATATCGCCAAGTGTCTAGCTCTAATACCATTTGTAACCGCCCAAGCCCACCGCTAGTAGATATTGTCCTTTTTGGACTTTCCCTTTCATACTAGTTTTTAAAGCGCGTCTTCTAGGGAAAGGTTTCCACTAAAAATTACCATCAACCGATATGGAAACAATTTTACAAATATAAATAACAAAAACAAATATACACATAACAACACAACCAATATTACAAAAGGCATAAAGAATGAACCTATATGTTATTTGCTTTATTTGCTGTCTTTTCAGAAGTAGCAAAAGGCGCTGGCCTGTTGATGTTGATTGATTATTGAGTTTACTGGTGGTTGTGGACAGTATGCGGTAAATTTCTGTTAGAGATATAGATACTTGGAGTATGTTTATCTGTTGAAAAGCTTCCAGTGAGAACAAGTTAACCATCAGACCAAGATGTTTTACTTTTATTTACCAACACACAGAGCTCTGTTAGTAGGATATGACTATAGAGCCAATCTTGGTGATATTTGGGTTTGTTCATCATGAAAGGTACTGGTCTGTTAGTACCGATTGACTATCGAGTTTGCTGGTGTTTATAGACAGTCGATCTTTGAAGAGACGGTCTTAAAAAAGGGTCTGTTCTAGGAAGAACAGAGAACTTCATACAAGTTGATACTAATTAAGATCAAAAGGAAGATGCTGGAATTTCTTGAGACAGATTTGAATGAAAAGACAAATTTGTTAACACATTCTTGTTAAGAGTCGAGAGGGGTTGATCTGAGATCGGATCTAGAGTGCATTCCTAAAACGGCTCAAGCCCATCGCTAGTAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGTTTCCCTTCAAGGTTTTTAAAATACGTTTGCTAGGGAGAGGTTTCTACACCCTTAGAAGGAATGTTTCGTTCTCCTTTCCAACCGACGTGGGATCTCACAATACACTCCCTTGGGGGCCCAACGTCCTCGCGGGCACACTGCTCAGTGTCTGACTCTAATACCATTTGTAACAGTCTAAGCTCACCGCTAGTATATATTGTCCCTTTTGGGCTTCCCCTCAACGTTTTAAAACACGTCTATTAGGGAGAGGTTTCCACACCCTTATAAGAAAAGTTTTGTTCTTCTCTCCAACCAATATGGGAACTCACAAGAAAGAAGAAAGAAGAAAGAAAAAGAAGAAAAAAAAAAAAGAGAAAATTTGTGGAGGCCATACCTAATTTCCGAAGTTTCCCGAAGAGGGAAAGTTCGTAAAAAATGTTAGAATACCACTTTCCCCTACCTCTCGACTCTTCTCACTAACGAACTGCCTGTGATGCTATGTGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTACTTATAACTTGCAAGGTTAGTGATACCACCAACCCAGGTATAGCTTAGAATAATGGACCTTCATGTTTATCTCATTTTGATCTGTAAATTCTTGTTCTTGTTCTTGTTGTCTGTGTTTGTATAGAAAGGTGTTTTAATCCATAAGTGTTTGAAACCTTCAATCCAGTAATGGGTTATGTGTTGGTTTGGTCTCTTTTCCAAGTTTATAAACTTACTGTTGATGCACGTGTAAGGCAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTAGAAAGCGTTCCTTTTGATAAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAAGATGAATTGATAGAGACGTAGTATGAACATGGAGGAACTTTACGATAACGAAGTGAGAACAATGTGTTTGATCGAGCATTGTTAAAAGGCACATAGATGGTCAATATAATTTTTGCTATAGTTTGTTACTCGATATAGAATACCATCTTACTTGTGAGATAAGCTTTATAGTCGAGAGGGAAACAACTCAGATCACCGAGTCCTCCTCCCTCGTATGTATCCACTCTTATCATTATCTTTCCTCG

mRNA sequence

ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCTAACCTCTCGAACCTGGATTCTCTCCCATCCCTTCCAGGTTTTTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTAGCCATGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGAAGATGAAGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCAAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTACTTATAACTTGCAAGGTTAGTGATACCACCAACCCAGGTATAGCTTAGAATAATGGACCTTCATGTTTATCTCATTTTGATCTGTAAATTCTTGTTCTTGTTCTTGTTGTCTGTGTTTGTATAGAAAGGTGTTTTAATCCATAAGTGTTTGAAACCTTCAATCCAGTAATGGGTTATGTGTTGGTTTGGTCTCTTTTCCAAGTTTATAAACTTACTGTTGATGCACGTGTAAGGCAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTAGAAAGCGTTCCTTTTGATAAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAAGATGAATTGATAGAGACGTAGTATGAACATGGAGGAACTTTACGATAACGAAGTGAGAACAATGTGTTTGATCGAGCATTGTTAAAAGGCACATAGATGGTCAATATAATTTTTGCTATAGTTTGTTACTCGATATAGAATACCATCTTACTTGTGAGATAAGCTTTATAGTCGAGAGGGAAACAACTCAGATCACCGAGTCCTCCTCCCTCGTATGTATCCACTCTTATCATTATCTTTCCTCG

Coding sequence (CDS)

ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCTAACCTCTCGAACCTGGATTCTCTCCCATCCCTTCCAGGTTTTTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTAGCCATGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGAAGATGAAGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCAAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGA

Protein sequence

MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDDRRNWNGSISHDFDLIGGEEEEAEEEDEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDIRSHRLDQLDDDQPHAWTGAQPAS
BLAST of Carg16318 vs. NCBI nr
Match: XP_022952196.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 174/206 (84.47%), Postives = 176/206 (85.44%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60
           MSLLAARSPPSLFAVPQYQPPF TSRTW+LSHPFQV HALLRASRRASNFSQGVD+PVDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRNWNGSI  DFDLIGGEE   XXXXXXXXXXXXXXXXXX                    
Sbjct: 61  RRNWNGSIGSDFDLIGGEE---XXXXXXXXXXXXXXXXXXLVQFVENVFRKVSRRARKAV 120

Query: 121 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
              LPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           QDIRSHRLDQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 203

BLAST of Carg16318 vs. NCBI nr
Match: XP_022972529.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima] >XP_022972530.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 177/206 (85.92%), Postives = 179/206 (86.89%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60
           MSLL ARSPPSLFAVPQYQPPF TSRTW+LS PFQ+ HALLRASRRASNFSQGVDNPVDD
Sbjct: 1   MSLLVARSPPSLFAVPQYQPPFPTSRTWLLSQPFQISHALLRASRRASNFSQGVDNPVDD 60

Query: 61  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRNWNGSI  DFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXX                
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXVENVFRKVSRRARKAV 120

Query: 121 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
              LPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           QDIRSHR DQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206

BLAST of Carg16318 vs. NCBI nr
Match: XP_023553854.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo] >XP_023553855.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74
Identity = 169/206 (82.04%), Postives = 170/206 (82.52%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60
           MSLLAARSPPSLFAV QYQPPF TSRTW+LSHPFQV HALLRASRRASNFSQGVDNPVDD
Sbjct: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60

Query: 61  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRNWNGSI  DFDLIGG   XXXXXXXXXXXXXXXXX                       
Sbjct: 61  RRNWNGSIGSDFDLIGGXXXXXXXXXXXXXXXXXXXXLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
              LPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           QDIRSHR DQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206

BLAST of Carg16318 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 242.7 bits (618), Expect = 1.1e-60
Identity = 149/206 (72.33%), Postives = 158/206 (76.70%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60
           MSL AA SPPSL+++P  QPP  TSRT ILSH  Q+ H LLRASRR SNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRNWN SIS DFD+IGGE+   XXXXXXXXXXXXXXX                       
Sbjct: 61  RRNWNRSISSDFDIIGGED---XXXXXXXXXXXXXXXLDLLVRFVENVFRKVSKRARKAV 120

Query: 121 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
              LPQSIPTKLVGF VNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           QDIRSHR D+LDDDQ HAWTGAQPAS
Sbjct: 181 QDIRSHRFDRLDDDQHHAWTGAQPAS 203

BLAST of Carg16318 vs. NCBI nr
Match: XP_022148690.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 158/208 (75.96%), Postives = 169/208 (81.25%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQY--QPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPV 60
           MS  AA SPPSLF++PQY  QP F +SRT +LSHPFQ+ H LLRASRR SNFSQGVDN V
Sbjct: 1   MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLV 60

Query: 61  DDRRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           DDRRNWN  IS DFD++GGE+  XXXXXXXXXXXXXXXXXXXXXXXX             
Sbjct: 61  DDRRNWNRPISSDFDIVGGED--XXXXXXXXXXXXXXXXXXXXXXXXENVFRKVSKRARK 120

Query: 121 XXXXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGIL 180
                LPQSIPTKLVGF VNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVW GIL
Sbjct: 121 AVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGIL 180

Query: 181 YLQDIRSHRLDQLDDDQPHAWTGAQPAS 207
           YLQDIRSHR DQLD++Q HAWTGAQPAS
Sbjct: 181 YLQDIRSHRFDQLDNEQHHAWTGAQPAS 206

BLAST of Carg16318 vs. TAIR10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 121.7 bits (304), Expect = 5.3e-28
Identity = 97/206 (47.09%), Postives = 120/206 (58.25%), Query Frame = 0

Query: 2   SLLAARSPPSLFAVPQYQPPFLT-SRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 61
           S+   RSP S F    + P  L  +RT I   P+        ASRR+ +F  G D+  DD
Sbjct: 13  SVALLRSPLSFFI---FTPKTLIFTRTRISGFPY-------LASRRSRDFINGRDDFADD 72

Query: 62  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
            R+WN  I  ++    G +E  XXXXXXXXXXXXXX                        
Sbjct: 73  TRSWNRKIKPEY----GFDEDYXXXXXXXXXXXXXXSLDLLLRFVENVFRKISKRARKAV 132

Query: 122 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 181
              LP SI TKLVGF VNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+
Sbjct: 133 RSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYM 192

Query: 182 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           Q+ R++R+++L DD P AW G QP S
Sbjct: 193 QESRNNRINELADD-PRAWNGMQPVS 203

BLAST of Carg16318 vs. TAIR10
Match: AT1G69935.1 (short hypocotyl in white light1)

HSP 1 Score: 51.2 bits (121), Expect = 8.7e-07
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 124 LPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 182
           LP ++  +LV F V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 123 LPAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

BLAST of Carg16318 vs. Swiss-Prot
Match: sp|F4I3V6|SHW1_ARATH (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-05
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 124 LPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 182
           LP ++  +LV F V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 123 LPAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A1S3C0Q8|A0A1S3C0Q8_CUCME (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.7e-58
Identity = 147/206 (71.36%), Postives = 155/206 (75.24%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60
           MSL A  SPPSLF++PQ QPPF TSRT +LSHPFQ+ + LLRA+RR SNFSQGVDN VD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRNWN S   DFDLI G   XXXXXXXXXXXXXXX                         
Sbjct: 61  RRNWNRS---DFDLI-GXXXXXXXXXXXXXXXXXXRSLDLLVRFVENVFRKSSRRARKAV 120

Query: 121 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
              LPQSIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL
Sbjct: 121 RSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           QD RSHRL+Q DDDQ HAWTGAQPAS
Sbjct: 181 QDTRSHRLEQFDDDQHHAWTGAQPAS 202

BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A0A0K2W4|A0A0A0K2W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 149/206 (72.33%), Postives = 155/206 (75.24%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60
           MSL A  SPPSLF++PQ Q PF TS T +LSHP  + + LLRA+RR SNFSQGVDN VDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RRNWN S   DFDLIGG EEXXXXXXXXXXXXXXXXX                       
Sbjct: 61  RRNWNRS---DFDLIGG-EEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAV 120

Query: 121 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
              LP SIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL
Sbjct: 121 RSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           QD RSHRL QLDDDQ HAWTGAQPAS
Sbjct: 181 QDTRSHRLGQLDDDQHHAWTGAQPAS 202

BLAST of Carg16318 vs. TrEMBL
Match: tr|V4RNQ0|V4RNQ0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029333mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 135/206 (65.53%), Postives = 151/206 (73.30%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60
           MS     SP  LF  P    P L    +   HPFQ  +  LRASRR+SN SQ  DN V+D
Sbjct: 1   MSFAVTLSP--LFLSP--SKPKLHFHNFPKFHPFQKIYP-LRASRRSSNISQVNDNFVED 60

Query: 61  RRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            RNWN +I+ +FD        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  PRNWNHAIAREFD--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
           X  LPQSI   LVGF VNGVL+LAFLWVLKAFLEV+CTLGT VFVSIL+IRGVW G+ YL
Sbjct: 121 XSVLPQSISKNLVGFSVNGVLILAFLWVLKAFLEVVCTLGTVVFVSILLIRGVWTGVTYL 180

Query: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 207
           Q+ R+HR+D LD + P AW GAQPA+
Sbjct: 181 QESRTHRVDDLDAENP-AWRGAQPAA 192

BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A061E0E9|A0A061E0E9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007264 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.8e-29
Identity = 111/210 (52.86%), Postives = 130/210 (61.90%), Query Frame = 0

Query: 1   MSLLAARSPPSLFAVPQYQPP---FLTSRTWIL-SHPFQVFHALLRASRRASNFSQGVDN 60
           MS     SP  L   P  +PP   F   +  +L +H FQ    LL ASRR  NF QG DN
Sbjct: 1   MSSTVTLSPTFLAGFPYRKPPSHFFSNPKILLLKTHSFQ----LLLASRRIPNFPQGTDN 60

Query: 61  PVDDRRNWNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            VD  RNW  SI+ +FD       XXXXXXXXXXXXXXXXXXXX                
Sbjct: 61  LVDGPRNWGRSITSEFD--DXXXXXXXXXXXXXXXXXXXXXXXXLIRFVQNVFRKISKRA 120

Query: 121 XXXXXXXLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIG 180
                  LP SI TKLVGF VNGVLMLAFLWVLKAFLEV+CTLG+ VFVS+L+IRG+W+G
Sbjct: 121 RKAVRAVLPVSISTKLVGFSVNGVLMLAFLWVLKAFLEVVCTLGSIVFVSVLLIRGIWMG 180

Query: 181 ILYLQDIRSHRLDQLDDDQPHAWTGAQPAS 207
           + Y+Q+ R  R+++L DDQ  AWTG  PA+
Sbjct: 181 VTYVQESRDQRINELVDDQ-RAWTGTHPAT 203

BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A2I4DSW0|A0A2I4DSW0_9ROSI (uncharacterized protein LOC108983133 OS=Juglans regia OX=51240 GN=LOC108983133 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.2e-28
Identity = 108/203 (53.20%), Postives = 132/203 (65.02%), Query Frame = 0

Query: 8   SPPSLFAVPQYQ-PPFLTSRTWILS-HPFQVFH--ALLRASRRASNFSQGVDNPVDDRRN 67
           SP SL ++ Q Q   FL++ +   S   F  FH   LL+ASRRASNF QG +  +DD RN
Sbjct: 9   SPLSLSSLTQSQRSEFLSNSSLKFSLRQFHSFHKLPLLQASRRASNFPQGSEGIIDDTRN 68

Query: 68  WNGSISHDFDLIGGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 127
           W+ SIS +F        XXXXXXXXXXXXXXXXXXX                        
Sbjct: 69  WSRSISPEF--------XXXXXXXXXXXXXXXXXXXLLVRFVENMFKKISRRARKAVRSV 128

Query: 128 LPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDI 187
           LP  I +KLVGF VNGVLMLAFLWVLKAFLEV+CTLG+ VFV IL+IRG+W G+ YLQ+ 
Sbjct: 129 LPVPISSKLVGFSVNGVLMLAFLWVLKAFLEVVCTLGSVVFVCILLIRGLWTGVTYLQEN 188

Query: 188 RSHRLDQLDDDQPHAWTGAQPAS 207
           R  ++++ DDD+ HAWTG+QPA+
Sbjct: 189 RYQKVNEFDDDR-HAWTGSQPAT 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022952196.11.2e-7584.47protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197... [more]
XP_022972529.11.2e-7585.92protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima] >XP_022972530.1... [more]
XP_023553854.14.0e-7482.04protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022988955.11.1e-6072.33protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima][more]
XP_022148690.12.5e-6075.96protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT4G33780.15.3e-2847.09FUNCTIONS IN: molecular_function unknown[more]
AT1G69935.18.7e-0746.55short hypocotyl in white light1[more]
Match NameE-valueIdentityDescription
sp|F4I3V6|SHW1_ARATH1.6e-0546.55Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3C0Q8|A0A1S3C0Q8_CUCME7.7e-5871.36uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=... [more]
tr|A0A0A0K2W4|A0A0A0K2W4_CUCSA1.1e-5672.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1[more]
tr|V4RNQ0|V4RNQ0_9ROSI1.1e-3065.53Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029333mg PE=4 ... [more]
tr|A0A061E0E9|A0A061E0E9_THECC5.8e-2952.86Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007264 PE=4 SV=1[more]
tr|A0A2I4DSW0|A0A2I4DSW0_9ROSI2.2e-2853.20uncharacterized protein LOC108983133 OS=Juglans regia OX=51240 GN=LOC108983133 P... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010100negative regulation of photomorphogenesis
GO:0009787regulation of abscisic acid-activated signaling pathway
Vocabulary: INTERPRO
TermDefinition
IPR039324SHW1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0009787 regulation of abscisic acid-activated signaling pathway
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16318-RACarg16318-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..96
NoneNo IPR availablePANTHERPTHR35474:SF1SUBFAMILY NOT NAMEDcoord: 24..205
IPR039324Protein SHORT HYPOCOTYL IN WHITE LIGHT 1PANTHERPTHR35474FAMILY NOT NAMEDcoord: 24..205