Carg16318 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCTAACCTCTCGAACCTGGATTCTCTCCCATCCCTTCCAGGTTTTTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGTTCATCGGATTTCTCTTCCCATTTATTGACCTTTTTTTCGTGTGTTTTTGCTCTCAATCTGCTCGATTGTGTTCCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTAGCCATGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGAAGATGAAGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCAAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTAGAAGTTTATTGAGTTTGTTTAAGCTTAATCATTGACTTTTTCTTTTTCTGTACTGTTGTTGATCAATTGTGTATTAGTGATTGGTTTTTCAGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTAAATACATCGATTTCATGCGTTTTCTTTGCTATTTCCATATGGATTTGTTACCTCGGCAATGTATGGATAGTTGTTAGCTTCTCATTGCAAAACAGAATTGTGTATTGAAATTCAACCAAAATAATGCTGCTGGAACTGTCATCACACTTTGCTTGATCAATTGGTTATGCGTGGCAAACCTCAACCAAGAAAAAATAAATGTGAGATTGTACGTTAGTTGGAGAGGGGAACGAAGCATTCTTTGTAAAGGTGTAGAAACCTTTTTCTAGCATACGTGTTTTAAAACCGTGAGGTATCTTAGACAATATCTGCCAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGATCCCGTCATCATGCAGTGTGCCAACAAGGACGCTGGCTCCTAAGGGGGTGGATTGTGAGATCCCACCTCGGTTGGAGAGGAGAACGAAATATTCCTTATTAATGTGTGGAAACCTTTCCCTAGAAGACGTGTTTTAAAACTGTGAGGCTTACGACGATACGTAATGGGCCAAAGTGGACAATATTTACGGCGATATGTAACGGACCAGAGCAGACAATATCTGCTAGCGGTGGACTTGAGTTGTTACAAATGGTATCAGAACTAGTCACCGAGTGGTGTGCTAGTGAGGACGCTAGCCCCCCTAAGGAGGTAGATTGTGAGAACTCTCATCGGTTGGAGAGGGAAACGAAGCAAGAAAACTTTTTGAAACCGGTGAGTATCTCTTAGTAGGGCTTCATTTGTACGATTCTAGTTAGAATCTTTATCATTTCTAAATCAATACAAGGTTCTCTTATTGTAATTGTCCAAGCCCACCGCAAGTAGATATTGTTCTCTTTGGGCTTTTCCTTTCGAACTTCTTCTCAAGGTTTTTAAAACGTGTTTGCTAGGGAGAGGTTTCCACATCCTTATAAACAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACTCCCCTTCAAGGCCCAACGTTCTCGTTGGCACTCGTTCCCTTCTCCAATCGATGTGAGACCCCCCAATCCACCCTCTTCAGGGCCCAATGTCCTTACTAGCACACCGCCTCGTGTCCACTCCCTTCGGGGCTCAGCCTCCTCGCTGGCATATCGCCAAGTGTCTAGCTCTAATACCATTTGTAACCGCCCAAGCCCACCGCTAGTAGATATTGTCCTTTTTGGACTTTCCCTTTCATACTAGTTTTTAAAGCGCGTCTTCTAGGGAAAGGTTTCCACTAAAAATTACCATCAACCGATATGGAAACAATTTTACAAATATAAATAACAAAAACAAATATACACATAACAACACAACCAATATTACAAAAGGCATAAAGAATGAACCTATATGTTATTTGCTTTATTTGCTGTCTTTTCAGAAGTAGCAAAAGGCGCTGGCCTGTTGATGTTGATTGATTATTGAGTTTACTGGTGGTTGTGGACAGTATGCGGTAAATTTCTGTTAGAGATATAGATACTTGGAGTATGTTTATCTGTTGAAAAGCTTCCAGTGAGAACAAGTTAACCATCAGACCAAGATGTTTTACTTTTATTTACCAACACACAGAGCTCTGTTAGTAGGATATGACTATAGAGCCAATCTTGGTGATATTTGGGTTTGTTCATCATGAAAGGTACTGGTCTGTTAGTACCGATTGACTATCGAGTTTGCTGGTGTTTATAGACAGTCGATCTTTGAAGAGACGGTCTTAAAAAAGGGTCTGTTCTAGGAAGAACAGAGAACTTCATACAAGTTGATACTAATTAAGATCAAAAGGAAGATGCTGGAATTTCTTGAGACAGATTTGAATGAAAAGACAAATTTGTTAACACATTCTTGTTAAGAGTCGAGAGGGGTTGATCTGAGATCGGATCTAGAGTGCATTCCTAAAACGGCTCAAGCCCATCGCTAGTAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGTTTCCCTTCAAGGTTTTTAAAATACGTTTGCTAGGGAGAGGTTTCTACACCCTTAGAAGGAATGTTTCGTTCTCCTTTCCAACCGACGTGGGATCTCACAATACACTCCCTTGGGGGCCCAACGTCCTCGCGGGCACACTGCTCAGTGTCTGACTCTAATACCATTTGTAACAGTCTAAGCTCACCGCTAGTATATATTGTCCCTTTTGGGCTTCCCCTCAACGTTTTAAAACACGTCTATTAGGGAGAGGTTTCCACACCCTTATAAGAAAAGTTTTGTTCTTCTCTCCAACCAATATGGGAACTCACAAGAAAGAAGAAAGAAGAAAGAAAAAGAAGAAAAAAAAAAAAGAGAAAATTTGTGGAGGCCATACCTAATTTCCGAAGTTTCCCGAAGAGGGAAAGTTCGTAAAAAATGTTAGAATACCACTTTCCCCTACCTCTCGACTCTTCTCACTAACGAACTGCCTGTGATGCTATGTGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTACTTATAACTTGCAAGGTTAGTGATACCACCAACCCAGGTATAGCTTAGAATAATGGACCTTCATGTTTATCTCATTTTGATCTGTAAATTCTTGTTCTTGTTCTTGTTGTCTGTGTTTGTATAGAAAGGTGTTTTAATCCATAAGTGTTTGAAACCTTCAATCCAGTAATGGGTTATGTGTTGGTTTGGTCTCTTTTCCAAGTTTATAAACTTACTGTTGATGCACGTGTAAGGCAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTAGAAAGCGTTCCTTTTGATAAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAAGATGAATTGATAGAGACGTAGTATGAACATGGAGGAACTTTACGATAACGAAGTGAGAACAATGTGTTTGATCGAGCATTGTTAAAAGGCACATAGATGGTCAATATAATTTTTGCTATAGTTTGTTACTCGATATAGAATACCATCTTACTTGTGAGATAAGCTTTATAGTCGAGAGGGAAACAACTCAGATCACCGAGTCCTCCTCCCTCGTATGTATCCACTCTTATCATTATCTTTCCTCG ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCTAACCTCTCGAACCTGGATTCTCTCCCATCCCTTCCAGGTTTTTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTAGCCATGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGAAGATGAAGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCAAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTACTTATAACTTGCAAGGTTAGTGATACCACCAACCCAGGTATAGCTTAGAATAATGGACCTTCATGTTTATCTCATTTTGATCTGTAAATTCTTGTTCTTGTTCTTGTTGTCTGTGTTTGTATAGAAAGGTGTTTTAATCCATAAGTGTTTGAAACCTTCAATCCAGTAATGGGTTATGTGTTGGTTTGGTCTCTTTTCCAAGTTTATAAACTTACTGTTGATGCACGTGTAAGGCAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTAGAAAGCGTTCCTTTTGATAAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAAGATGAATTGATAGAGACGTAGTATGAACATGGAGGAACTTTACGATAACGAAGTGAGAACAATGTGTTTGATCGAGCATTGTTAAAAGGCACATAGATGGTCAATATAATTTTTGCTATAGTTTGTTACTCGATATAGAATACCATCTTACTTGTGAGATAAGCTTTATAGTCGAGAGGGAAACAACTCAGATCACCGAGTCCTCCTCCCTCGTATGTATCCACTCTTATCATTATCTTTCCTCG ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTCCTCAATATCAACCGCCATTTCTAACCTCTCGAACCTGGATTCTCTCCCATCCCTTCCAGGTTTTTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTAGCCATGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGAAGATGAAGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCAAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGATTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGCTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGA MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDDRRNWNGSISHDFDLIGGEEEEAEEEDEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDIRSHRLDQLDDDQPHAWTGAQPAS
BLAST of Carg16318 vs. NCBI nr
Match: XP_022952196.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]) HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75 Identity = 174/206 (84.47%), Postives = 176/206 (85.44%), Query Frame = 0
BLAST of Carg16318 vs. NCBI nr
Match: XP_022972529.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima] >XP_022972530.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]) HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75 Identity = 177/206 (85.92%), Postives = 179/206 (86.89%), Query Frame = 0
BLAST of Carg16318 vs. NCBI nr
Match: XP_023553854.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo] >XP_023553855.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74 Identity = 169/206 (82.04%), Postives = 170/206 (82.52%), Query Frame = 0
BLAST of Carg16318 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]) HSP 1 Score: 242.7 bits (618), Expect = 1.1e-60 Identity = 149/206 (72.33%), Postives = 158/206 (76.70%), Query Frame = 0
BLAST of Carg16318 vs. NCBI nr
Match: XP_022148690.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia]) HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60 Identity = 158/208 (75.96%), Postives = 169/208 (81.25%), Query Frame = 0
BLAST of Carg16318 vs. TAIR10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 121.7 bits (304), Expect = 5.3e-28 Identity = 97/206 (47.09%), Postives = 120/206 (58.25%), Query Frame = 0
BLAST of Carg16318 vs. TAIR10
Match: AT1G69935.1 (short hypocotyl in white light1) HSP 1 Score: 51.2 bits (121), Expect = 8.7e-07 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 0
BLAST of Carg16318 vs. Swiss-Prot
Match: sp|F4I3V6|SHW1_ARATH (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 1.6e-05 Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 0
BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A1S3C0Q8|A0A1S3C0Q8_CUCME (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 7.7e-58 Identity = 147/206 (71.36%), Postives = 155/206 (75.24%), Query Frame = 0
BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A0A0K2W4|A0A0A0K2W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56 Identity = 149/206 (72.33%), Postives = 155/206 (75.24%), Query Frame = 0
BLAST of Carg16318 vs. TrEMBL
Match: tr|V4RNQ0|V4RNQ0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029333mg PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30 Identity = 135/206 (65.53%), Postives = 151/206 (73.30%), Query Frame = 0
BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A061E0E9|A0A061E0E9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007264 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 5.8e-29 Identity = 111/210 (52.86%), Postives = 130/210 (61.90%), Query Frame = 0
BLAST of Carg16318 vs. TrEMBL
Match: tr|A0A2I4DSW0|A0A2I4DSW0_9ROSI (uncharacterized protein LOC108983133 OS=Juglans regia OX=51240 GN=LOC108983133 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 2.2e-28 Identity = 108/203 (53.20%), Postives = 132/203 (65.02%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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