CsaV3_7G007690 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G007690
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ATP phosphoribosyltransferase regulatory subunit
Location	chr7 : 4793882 .. 4797182 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCTATCCATATTTCCTACACGCTCCTTCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGTCCATTTTGATTTCTCTTCCCATCTATTCATCTTTTTTTCCTGTGTTTTTGTTCTTAATTTGCTCGATTAACTTCCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGATTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTAAAGTTTATTCAGCTACGAGCTTAATCGTTGATTTTTTTTTTCTGCCTGTTTTGTTGTTGGTTTATTGTGTATCAGTACTTGTTTTTCCAGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTAAATGCTTTGAAATTTAGCCATTTTTAATGCTTTCCTTTGGTATTTCCACATGGATTTGTTTCCTCAGCAATATAGGTAGTTGTAAGCTTTTCATTGCAAAGGAGAAATTTGTGTTCGAAATTTAACCTTAATTTTGGAGATGGAATTGTTATGACGCTTTGCTTGTGCATGGCAAACGTATCAACCGAAAAAAAAAAAGAAAAGAGATGTCTTATGCTTCTAATTGTTGGAAGAAGCTATTCAATGGCCTCATCTGTAGTCATACTTTCTGATAGTCAGCAAATTCAATTGGTTTAATGTTAGAGCGTTAGAGTTTTTTTTTTCCATCTTGAAGTTCCCTCCACAAGATATTTGTAACTATTGCTTGTTGATAAGAGTCTCTTTGCAACTCCTTTAGTATTGCTGGTTCCATGGGCTAACTCCAACTCCAATATATGTTTTGATACCGAATCCACCTCATAAACAATCTCCATTTCTTATGAACAGTTGTGATGTATTTAGTTGCTTAATTAGTTGTTAATTGCCTACTATCTACTGGACTGGATTTTAGACACTCTTTGACTTGTTGAAAAGGTGATAGGTCACCTTTGACTTGTTGTAGTATAAATAATAGCTGTTATTATTTTTATTCCAGAATATTAATAAAAAATACCCAGATTTCTTGTTTCTGTGTTAATTCTCCAATAACACACCAAGTTGTGAACCAATCTTGTCATCAGAAAACTTTTTGAAACTGGCAAGTATCTGTAAATTAACGAAATATTCAGATTGATGGCCGTCCCGTCATTTACAGGGTTCTAGTAAGAATCTTCATATGGTTAAAAGTGAACTCAGGGACTGTTTGGCCCCTAGGCGAGGCGCATTGAGGATTAGTGCACCTCTTTGAGCTTCTTTTTTGACAATTCCCTTAAAACACAAATTTGGCTGCCGTTCAATATAAAATATAATATAGTTATTTTTTTTAGCCTAATTTGAAATAAAGCATCATTGTACAATTTATACCTATGGCTAAGATTGATCTAAAGTACAAACTGAAGCAGCAGATTTCTCCTATATCTTGGTGTTGAATGACTAATATTTAACTCTTATATATCTTGGCGTTGAATGACTAATATTTAACTCTTATATATCTTTTTTTTTTTGTACAAGTTTCATTTCTATCCATCTATTTTGTGGTTGTGTAAATAAACATGTATATAGTGTGTGTGTGTATATGTATATTATTTCTTATACACAGTGTACCTCACAAAAAAAAACTGCGCCTTTTTTTCCACCTTGCGCCTAGGCTTCAAAGGGCCATTGTGCCTTAGTGCATATTGGGCATTTTAAAACACTGGTTAGTTGATAAATGTGAACAATAGAGATAGAGAGAAAGATCGAGTTTCTTGATAATCATAAAAAATAGAAAACGAGGGAAAGGTGAAGCTACTCGATAAATGTGCACACTTCACTAAGTTGTTTTTAACCAAACAAATCCTAAATCCTAAACGTCAGTTAGCCTTCTTTGGTTTTTATCAGTAGTGAAAGTACCAGTCTATTGCTGTGAATCAACTTCACTACCAGTCTATTGATGTGAATCAACTGAATTTTCTCGTGCTTGTAGACAGTTGACGCTAAAATATCTGCTGGCAGGATGTGAGTAAGAAAAGTCATGTCTATATGACTGGAATTTTGAAGGAAATCCAACAATATGCATCAGAGCCACTTGCCAGTAGTAATCTTAGACATACGTTAGCTTTCTTTGGGGTTTTATTTTCCAACACACACAAATACTTGTGTTTTCGGAACATGACAAAACGAAAAAACCTGTATGGTATTTGACTTTTATTTTCTGTCTTCTCAGAGCTAGTGAAAAGCGCTGGTCTGTTGATGTAGATTGGTTATTGAGTTTACTAGTGGTTGTAGACAGTTTGTCTGTTGGTGTGAATTGACTATTGAGTTTTCTGGTGTTCATAGACAGTAGGTCCCTCGGGAGACTGTTCTAAAAGGGTCTGGTATGGGAAGAATAAAGAATTTCATACAAGCTGAAACTAATTAAGACTGTAATTTCTTGAGAGAGATTTTTATTTAAAAACAAATTTGTTAATGCATTCTTGTTGAAGAAGTTCTCTTTGCCAGTTTTTTTACTATAATGGTGTCCTGTAAGTAGCTGAGGGTTTGACATGGAGTGGAATTTAAATGTTTTCTTTTCCCGTTTCTATTCTTTTCTCCTTTTTTTCGTTCATCGAGAGGGGTTGGTCAAATAAGGGATATTGAATGCTTGCTTTCTTTTGGATTTTCTTCCCTCTGGTTTTTTGGGTAATCTCTTGTAGGGTGTTTATTTTATTTTTATTTTTCTACATGACATCACTCTCTTCTCTTCTATTTTCAATTTTCTCAACAATGTTATCCTTCCATTTAAAGGAAAAAAATAATTCTCCTTTTATGAAGATCATACCTAATTTCCATAGTTTTCTCCTTCGTTATTACTGTATTAGGACTATTTTCATTAACTCCCTTGGCTATATGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

mRNA sequence

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCTATCCATATTTCCTACACGCTCCTTCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGATTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

Coding sequence (CDS)

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCTATCCATATTTCCTACACGCTCCTTCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGATTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

Protein sequence

MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDRRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDDQHHAWTGAQPAS

Homology

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BLAST of CsaV3_7G007690 vs. NCBI nr
Match: XP_004136931.2 (PREDICTED: uncharacterized protein LOC101213497 [Cucumis sativus] >KGN43838.1 hypothetical protein Csa_7G070780 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 2.2e-93
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRLGQLDDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

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BLAST of CsaV3_7G007690 vs. NCBI nr
Match: XP_008455053.1 (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 321.6 bits (823), Expect = 1.9e-84
Identity = 187/202 (92.57%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIG   XXXXXXXXXXXXXXX  LDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGXXXXXXXXXXXXXXXXXXRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

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BLAST of CsaV3_7G007690 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 290.0 bits (741), Expect = 6.1e-75
Identity = 172/205 (83.90%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQ P  TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFD+IGGE+  XXXXXXXXXXXXXXXLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGGED--XXXXXXXXXXXXXXXLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           D RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of CsaV3_7G007690 vs. NCBI nr
Match: XP_022927841.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 288.5 bits (737), Expect = 1.8e-74
Identity = 171/205 (83.41%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQL   TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPHSQLRLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFD++GGE+  XXXXXXXXXXXXXXXLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIMGGED--XXXXXXXXXXXXXXXLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           D RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of CsaV3_7G007690 vs. NCBI nr
Match: XP_023530484.1 (LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 169/205 (82.44%), Postives = 181/205 (88.29%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSL A LSPPSL+SI  SQ P  TS TS+ SH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLHAALSPPSLYSIRHSQPPLPTSRTSIXSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFD+IGGE+  XXXXXXXXXXXXXXXLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGGED--XXXXXXXXXXXXXXXLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           D RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of CsaV3_7G007690 vs. TAIR10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 174.1 bits (440), Expect = 8.8e-44
Identity = 115/199 (57.79%), Postives = 145/199 (72.86%), Query Frame = 0


Query: 5   AVLSPPSLFSIPQSQLPFST-SPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDRRN 64
           ++ SP S  ++ +S L F   +P +L+     IS     A+RR+ +F  G D+F DD R+
Sbjct: 6   SISSPSSSVALLRSPLSFFIFTPKTLIFTRTRISGFPYLASRRSRDFINGRDDFADDTRS 65

Query: 65  WNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVLPPS 124
           WNR      G +E  XXXXXXXXXXXXXX LDLL+RFVEN+FRK S+RARKAVRS+LP S
Sbjct: 66  WNRKIKPEYGFDEDYXXXXXXXXXXXXXXSLDLLLRFVENVFRKISKRARKAVRSILPVS 125

Query: 125 IPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHR 184
           I TKLV FSVNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q++R++R
Sbjct: 126 ISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQESRNNR 185

Query: 185 LGQLDDDQHHAWTGAQPAS 203
           + +L DD   AW G QP S
Sbjct: 186 INELADDP-RAWNGMQPVS 203

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BLAST of CsaV3_7G007690 vs. TAIR10
Match: AT1G69935.1 (short hypocotyl in white light1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 94  LDLLVRFVENIFRKSSRRARKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVIC 153
           +DLL+RF+ ++F+K S+R +KA R +LP ++  +LV+F+V+G+L+L  L + +AFLEVIC
Sbjct: 97  VDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVIC 156

Query: 154 TLGTAVFVSILIIRGVWIGILYLQ 178
            LG  VF  IL+IR  W    + Q
Sbjct: 157 NLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of CsaV3_7G007690 vs. Swiss-Prot
Match: sp|F4I3V6|SHW1_ARATH (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-13
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 94  LDLLVRFVENIFRKSSRRARKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVIC 153
           +DLL+RF+ ++F+K S+R +KA R +LP ++  +LV+F+V+G+L+L  L + +AFLEVIC
Sbjct: 97  VDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVIC 156

Query: 154 TLGTAVFVSILIIRGVWIGILYLQ 178
            LG  VF  IL+IR  W    + Q
Sbjct: 157 NLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of CsaV3_7G007690 vs. TrEMBL
Match: tr|A0A0A0K2W4|A0A0A0K2W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.5e-93
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRLGQLDDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of CsaV3_7G007690 vs. TrEMBL
Match: tr|A0A1S3C0Q8|A0A1S3C0Q8_CUCME (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.2e-84
Identity = 187/202 (92.57%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIG   XXXXXXXXXXXXXXX  LDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGXXXXXXXXXXXXXXXXXXRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

[Close]

BLAST of CsaV3_7G007690 vs. TrEMBL
Match: tr|A0A2I4DSW0|A0A2I4DSW0_9ROSI (uncharacterized protein LOC108983133 OS=Juglans regia OX=51240 GN=LOC108983133 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.6e-42
Identity = 129/208 (62.02%), Postives = 151/208 (72.60%), Query Frame = 0


Query: 1   MSLPAVLSPP-SLFSIPQSQLPFSTSPTSL-----LSHPIHISYTLLRATRRTSNFSQGV 60
           MS    LS P SL S+ QSQ     S +SL       H  H    LL+A+RR SNF QG 
Sbjct: 1   MSFSVTLSSPLSLSSLTQSQRSEFLSNSSLKFSLRQFHSFH-KLPLLQASRRASNFPQGS 60

Query: 61  DNFVDDRRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARK 120
           +  +DD RNW+RS    I  E XXXXXXXXXXXXXXXXX  LLVRFVEN+F+K SRRARK
Sbjct: 61  EGIIDDTRNWSRS----ISPEFXXXXXXXXXXXXXXXXXXXLLVRFVENMFKKISRRARK 120

Query: 121 AVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGIL 180
           AVRSVLP  I +KLV FSVNGVLMLAFLWVLKAFLEV+CTLG+ VFV IL+IRG+W G+ 
Sbjct: 121 AVRSVLPVPISSKLVGFSVNGVLMLAFLWVLKAFLEVVCTLGSVVFVCILLIRGLWTGVT 180

Query: 181 YLQDTRSHRLGQLDDDQHHAWTGAQPAS 203
           YLQ+ R  ++ + DDD+ HAWTG+QPA+
Sbjct: 181 YLQENRYQKVNEFDDDR-HAWTGSQPAT 202

[Close]

BLAST of CsaV3_7G007690 vs. TrEMBL
Match: tr|A0A1R3GZ92|A0A1R3GZ92_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_32481 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.5e-41
Identity = 118/190 (62.11%), Postives = 141/190 (74.21%), Query Frame = 0


Query: 18  SQLPFSTSPTSLLSHPIHI-----SYTLLRATRRTSNFSQGVDNFVDDRRNWNRSDFDLI 77
           S  P+ + P+ L ++P  +     S   L A+RR  NF QG DN VD  RNW+RS     
Sbjct: 9   SPFPYRSPPSLLFANPKIVLLKSQSLQPLLASRRIPNFPQGTDNLVDGPRNWSRSI---- 68

Query: 78  GGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRARKAVRSVLPPSIPTKLVAFS 137
              E XXXXXXXXXXXXXXXXLDLLVRFVEN+FRK S+RARKAVR+VLP SI +KLV FS
Sbjct: 69  -TSEFXXXXXXXXXXXXXXXXLDLLVRFVENVFRKLSKRARKAVRAVLPVSISSKLVGFS 128

Query: 138 VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDDQH 197
           VNGVL+LAFLWVLKAFLEV+CTLG+ VFVSIL+IRG+W G+ YLQ++R  R+ +  DDQ 
Sbjct: 129 VNGVLVLAFLWVLKAFLEVVCTLGSVVFVSILLIRGIWTGVTYLQESRDRRINEFVDDQ- 188

Query: 198 HAWTGAQPAS 203
            AW GAQP +
Sbjct: 189 SAWNGAQPVT 192

[Close]

BLAST of CsaV3_7G007690 vs. TrEMBL
Match: tr|D7MGF6|D7MGF6_ARALL (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_491300 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 125/210 (59.52%), Postives = 152/210 (72.38%), Query Frame = 0


Query: 1   MSLPAVLSPPS----LFSIPQSQLPFST-SPTSLLSHPIHIS---YTLLRATRRTSNFSQ 60
           M   A +S PS    L S+ +S L F   SP +L+     IS   Y LL A+RR+ +F  
Sbjct: 1   MPFSASISSPSSLALLSSLKRSPLSFFIFSPKTLIFTRTRISDFPYPLL-ASRRSRDFIN 60

Query: 61  GVDNFVDDRRNWNRSDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKSSRRA 120
           G D+F DD R+WNR      G +EXXXXXXXXXXXXXXXX LDLL+RFVEN+FRK S+RA
Sbjct: 61  GRDDFADDTRSWNRKIKPEYGFDEXXXXXXXXXXXXXXXXSLDLLLRFVENVFRKISKRA 120

Query: 121 RKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIG 180
           RKAVRS+LP SI TKLV FSVNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G
Sbjct: 121 RKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAG 180

Query: 181 ILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 203
           + Y+Q++R++R+ +L DD   AW G QP S
Sbjct: 181 VAYMQESRNNRINELADDP-RAWNGVQPVS 208

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136931.2	2.2e-93	100.00	PREDICTED: uncharacterized protein LOC101213497 [Cucumis sativus] >KGN43838.1 hy...	[more]
XP_008455053.1	1.9e-84	92.57	PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]	[more]
XP_022988955.1	6.1e-75	83.90	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
XP_022927841.1	1.8e-74	83.41	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]	[more]
XP_023530484.1	2.2e-72	82.44	LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pe...	[more]

BLAST of CsaV3_7G007690 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33780.1	8.8e-44	57.79	FUNCTIONS IN: molecular_function unknown	[more]
AT1G69935.1	1.1e-14	46.43	short hypocotyl in white light1	[more]

BLAST of CsaV3_7G007690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4I3V6\|SHW1_ARATH	2.0e-13	46.43	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of CsaV3_7G007690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2W4\|A0A0A0K2W4_CUCSA	1.5e-93	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1	[more]
tr\|A0A1S3C0Q8\|A0A1S3C0Q8_CUCME	1.2e-84	92.57	uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=...	[more]
tr\|A0A2I4DSW0\|A0A2I4DSW0_9ROSI	7.6e-42	62.02	uncharacterized protein LOC108983133 OS=Juglans regia OX=51240 GN=LOC108983133 P...	[more]
tr\|A0A1R3GZ92\|A0A1R3GZ92_9ROSI	6.5e-41	62.11	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_32481 PE=4 SV=1	[more]
tr\|D7MGF6\|D7MGF6_ARALL	2.5e-40	59.52	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009787	regulation of abscisic acid-activated signaling pathway
GO:0010100	negative regulation of photomorphogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR039324	SHW1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007690.1	CsaV3_7G007690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	PANTHER	PTHR35474:SF1	SUBFAMILY NOT NAMED	coord: 17..201
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	FAMILY NOT NAMED	coord: 17..201

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G007690	CSPI07G06730	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G007690	Cucsa.219030	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G007690	CmaCh11G016920	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G007690	CmaCh19G005400	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G007690	CmoCh11G014280	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G007690	CmoCh19G005540	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G007690	Cp4.1LG15g04310	Cucurbita pepo (Zucchini)	cpecucB0323
CsaV3_7G007690	Cp4.1LG04g07520	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G007690	CsGy7G006280	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G007690	Carg16318	Silver-seed gourd	carcucB0490
CsaV3_7G007690	Carg23045	Silver-seed gourd	carcucB0770
CsaV3_7G007690	Cla001614	Watermelon (97103) v1	cucwmB635
CsaV3_7G007690	MELO3C018531	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G007690	ClCG02G007130	Watermelon (Charleston Gray)	cucwcgB572
CsaV3_7G007690	Lsi03G005990	Bottle gourd (USVL1VR-Ls)	cuclsiB555
CsaV3_7G007690	MELO3C018531.2	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G007690	Cla97C02G033970	Watermelon (97103) v2	cucwmbB550

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G007690	Watermelon (97103) v2	cucwmbB537
CsaV3_7G007690	Watermelon (97103) v2	cucwmbB577
CsaV3_7G007690	Wax gourd	cucwgoB674
CsaV3_7G007690	Wax gourd	cucwgoB686
CsaV3_7G007690	Wax gourd	cucwgoB702
CsaV3_7G007690	Cucumber (Chinese Long) v3	cuccucB100
CsaV3_7G007690	Cucumber (Chinese Long) v3	cuccucB188
CsaV3_7G007690	Silver-seed gourd	carcucB0329
CsaV3_7G007690	Cucumber (Gy14) v2	cgybcucB198
CsaV3_7G007690	Cucumber (Gy14) v1	cgycucB540
CsaV3_7G007690	Cucurbita maxima (Rimu)	cmacucB0057
CsaV3_7G007690	Cucurbita maxima (Rimu)	cmacucB0232
CsaV3_7G007690	Cucurbita maxima (Rimu)	cmacucB0414
CsaV3_7G007690	Cucurbita maxima (Rimu)	cmacucB0589
CsaV3_7G007690	Cucurbita maxima (Rimu)	cmacucB0918
CsaV3_7G007690	Cucurbita maxima (Rimu)	cmacucB0959
CsaV3_7G007690	Cucurbita moschata (Rifu)	cmocucB0409
CsaV3_7G007690	Cucurbita moschata (Rifu)	cmocucB0910
CsaV3_7G007690	Cucurbita moschata (Rifu)	cmocucB0949
CsaV3_7G007690	Cucurbita pepo (Zucchini)	cpecucB0141
CsaV3_7G007690	Cucurbita pepo (Zucchini)	cpecucB0582
CsaV3_7G007690	Cucurbita pepo (Zucchini)	cpecucB0736
CsaV3_7G007690	Cucurbita pepo (Zucchini)	cpecucB0995
CsaV3_7G007690	Wild cucumber (PI 183967)	cpicucB123
CsaV3_7G007690	Wild cucumber (PI 183967)	cpicucB248
CsaV3_7G007690	Bottle gourd (USVL1VR-Ls)	cuclsiB554
CsaV3_7G007690	Bottle gourd (USVL1VR-Ls)	cuclsiB573
CsaV3_7G007690	Melon (DHL92) v3.5.1	cucmeB581
CsaV3_7G007690	Melon (DHL92) v3.5.1	cucmeB569
CsaV3_7G007690	Melon (DHL92) v3.5.1	cucmeB585
CsaV3_7G007690	Melon (DHL92) v3.6.1	cucmedB555
CsaV3_7G007690	Melon (DHL92) v3.6.1	cucmedB572
CsaV3_7G007690	Watermelon (Charleston Gray)	cucwcgB556
CsaV3_7G007690	Watermelon (Charleston Gray)	cucwcgB601
CsaV3_7G007690	Watermelon (97103) v1	cucwmB602
CsaV3_7G007690	Watermelon (97103) v1	cucwmB607