Carg23045 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23045
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP phosphoribosyltransferase regulatory subunit
Location	Cucurbita_argyrosperma_scaffold_163 : 148689 .. 153398 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTTCAGCAAAAAACGAAAGCATCTGCAAACGGCTGCTGTTCTTCCACAGCTGATCATGTCCTTACCTGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCCTCATTCTCAGCTGCGATTACCAACCTCTCGGACCTCGATTCTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGTCCACCGGATTTCTCTTCCCCTCTATTCGCCTTTGTTGTTTTTGTTCTCAATCTGCTCGATCTCTTCCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCGATTAGCTCCGACTTCGACATAATCGGTGGCGAAGACGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTAGATGTTTTTCTTTCTTGTTCATAAATAAGATTACTCATTAAATTTTTATCTATGAATTGTGGTTAGTCAATTTTGCATTAGAAATTGATTTTCTCAGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAGCGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTAACTGAATCGATATTTAGCCCTTTTATTGCGTTTCCTTTAGTATTTCCATATGGATTTGTGTCCTCAGTAATAGATAGTTAGCTGTAAACTTTCATTGCAAAAGAGAAATGCGTGTTCGAAATTCGACTATAGGAATGCAGATATTTTAGTTTGGTTATGGAGAAGGGGGTGAAAGAATTGTTATGACACTGAGTTCTTGTTCAATTGGATATGCATGACAAACGTAGCACCCAAAGAAGAGATTTCTTGTCCTCCGTTGGGAGATGGTATTTCTGTTAGGGAACTTTGGCTAGAAAGTAAATGGAAAACCTTTTTTGAAGTAGAAGAATTGTCAGTTGGTTTTATACATGGAATTGCTGGTCTTCGGTTCGTTGTCCCCCAAAAAATGAGTTGTAATTGTGGTATTAGTTCTATTTTCGTTAAATCAAGTCTCTTTGTAACTTCATTAGTATGGCTAATGTCCAGGGCTACCCCCCCTCCTAGATATGTCTTGAGATTGAATTCAACTTTATAAATCTTCTCATATGAACAGTCGTAGTAAACCAATATTGTCGTTGGAAAACTTTTCGAAACCTGTGAGTATCTCTTAATTGACGGTATTCATACTGATTAAGGGTGTCATCTGCTCGGCTCTAGTTAGATGCTGGATATGGTTAAAAATGAACCTAAACGTCAGTTGGTCTTGTTTGCTGCATTCATCAGAAGTAGTGAAAAGTACTAGTCCAATGATGTGGATTGCCTATTGAATTTTCTTGTGCTTGTGGATAGTTCGTGCTAAACTTCTCTGATGGCAAGATCTAAACGAGACAAGTCAGTCTTATCCATCAGAATCACTGGCCAACAATAATATGATCCATCCGAATCACTGGGCAATAGTAACATTAGATATATGTATGCACTCTTCTGGAGGGTTTATTTACCTGCACACTAACAGTTTTTTTATCGGGATAGGGAAAAAGAATAAACCTAGATGGTATTTTATTGTGAGATCCCTCATCGGTTGAGGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATACGTTTTAAAAACCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGCCGTTACAAAAGTTATCAGAGCCAGACATCGGGAGATGTACCAGTGAGGAGGCTGAGCCCCAAAGGGTGGTGTACACGAGACGGTGTACCAGCAAGGACGCTGGGCTTCGAGGGGGGGGGGGGGGGGTGGATTAGGGGATCTCACATGAATTGGAGAAGGGAACGAGTACCAACAAGAACGCTGGGCCCCGAAGGGAGTGAATTGTGAAATCTTACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTTCCTAGCAGACGTGTTTTAAAAACCTTAAGGGGAAGCCTGAAAGGGAAAACTCAAAGAAGACAGGACAATATCGGCTAGCGGTGGGCTTGAGCCGTTACAGTATTTGACTTTGTTTGTTGTCTACTCAGAAGTAGATCAAAGTGCTGGTCTGTTGATGTAGATTGATTATTGAGTTTGATGGTGGTCCGTGGTTGTAGACAGCATGAATGAAATTTCTGTTATAGCGAGATATAGATAGTCGGAGTATTCGGCATCATCTGTCTCTCTAGTGGGAATAAGTGAAACTACAGACTTTGCTAGAGGTTGTAATTACCTACTCACGTAGTACTTTTTATTTTTATGAGAACTGCAAACCTTTCATGGATGAAAAATGAAGGATTACGAAGGGCATACAACAAGAAAGGCCCCACAAAAAATAGCTAGACTAAAACAAATGGAAACTTCAATCAAACAAAAGAAGTCCAACAGGGTAATTATGAAGGCCTTAAAGCCCAAAGGGAGATGTGGAATCTAACAAGGGACCACACCTCCTATTTAGGTCGATCAATCCCTAAAAGTTCTGTTATTTCGTCCTGCCCAGCCCCACAAAATCACGCAAACCTTGGCTAGCCACAGAAAACGCGCCCCCTATCATAAAAGGGCGGGTGAAGCAAGAGTTCCTTAATCAAAGAGCTACACCCTCCAGGTCGAGTTAAATGAAAATTGAAAGCCCGGAAGAAGCAACTCCAAACTGAGAATGCTTAGTCATAGCATCTCCCTGCAAGGTGGTCAAGATCCTCAACCCGCCCGCCTACAGAGAATACAACACGTAGGCCCTAACAGACCCATCTTATACCAATACACTTATAGCACTATTAGAGGATATGACTAAAGGGACAACTTAGGGTTGTATTTGACTTTTTTTTCTTTTTTTTAATCAATAGTGAGAAGTACAGGCCTGTTGGCGTGGATTGACTATTGAGTTTGCTGGTTGTGGTGGTTGTAGACAGTAGTGTAACAGCCCAAGCCCGGGCTAGGAGATATTGTCTTTTTTGGCTTTTCCGTTCCGAGAAGGTTGTAAAACGCGTTCCAAGGGAGAAGTTTCCACACCTTTATAAGGAATGCTTCATTCTTCTCTCCAATCGATTTGGGATCTCACAATCCACCCCCCTTGAGGGCCTAGCGTCCTCGCTGGTACACCGCCCGGTGTCTGGCTTTGATACTATTTGTAATAGCTCAAGCCTACTGCTAGCAAATATTGTCCTCTTTAGGCTTTCCCTTCTAAGCTTTAAAATGCGTCCACTAGGGAGAGGTTTGCACACCCTTATAAGGAATGCTTCGTTCTCTTCTCCAACTGATGTGGGATCTCATAAGTAGGCTTTCAGGAGACGGTCTAAAATTGTTCTAGTATAGAAAGAACCGGAAACTTTCAACGAGCTAAAACTAATAAAGGTCGATAGGAAGTTTAAGAATTTCTTGACAAAATTCGTTCTACGAAGATATCCATGGAAGAATAGTTTCGTTGATGTAAGAATACTTTTATTGATGTATTCTTGTTGAGAAAGTTTTTTTTTGCCATAGACTCTAGTGGTGTCATGTGTAGCCGAGGGTTAGATTTCTCAGAACTATATACTTCTAGCTCCTTTCTTTGTGCTTGGCCTTTATTTCTGCACGTCTTTGCTCTCTTCTAGCTTCAATTTTCTCAACAATACCACCTTCAATAGAGAAAGAACAAAAGAAAAAAGAACTTATTTGTATGAATTAGATCATATCTAATTTCCAACGTTTCCCCCTTCAGAAAAAAAGAACACTTATTTCCTCTGCTGCTTTGTGAAATCTTAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTCAATCGACTGGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGAATTCCTCACTTAACTACTTATACGTTATAAGTGACAAGGTTAGTGATGACACATAAAAAGAAAAAAAAGGAAGATAAAGATTAGAATAAAATAGGCTTGGTTTCATAGCCTTCATACTTATTTCATGGTCAGTAAATTATTCGTTCTCTAAACTTCGTATAAAAAATTGTTTTAGTCCTTGCCAAAAGTGTTCATAAATAGTTAAACATAAGTTTAGGGGTGGGTTTCGAAACGAAATCGGATTTTTGGAAATGCTTTACGAAAATAGCTGCAAGGACTATAACAACTTTCTATGCAAAGTTTATGGACTAAAATAGTAAAACATTTCGAAGTTTAAAGATCAAAATAAAATATGCATGAAAGTTCGAATATCATAGTCGAGTTTAAACGAGTATAGCTGGAATTCTGTTCTCTATGATTCAATATAATTTTGTCCTTGTAGCTTTCTGTAGACTATGAAAGTATTTGTTCTTTTTGCCTCAAATCTTTAGATCATGAGTAGAAACAGCAAGGGAGGGTAGCTTCTGATGTAATATTATGAGGCAGATTTGGTGTATTATTTGGTTGTAATGTTTTTTTTGCGCAATGAAATTGGATTCGTAATGAAAAAACGAAACGAAATGAAAGGATACCTGAACACATTGTTGTACTGAGGCTG

mRNA sequence

TTTGTTCAGCAAAAAACGAAAGCATCTGCAAACGGCTGCTGTTCTTCCACAGCTGATCATGTCCTTACCTGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCCTCATTCTCAGCTGCGATTACCAACCTCTCGGACCTCGATTCTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGTCCACCGGATTTCTCTTCCCCTCTATTCGCCTTTGTTGTTTTTGTTCTCAATCTGCTCGATCTCTTCCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCGATTAGCTCCGACTTCGACATAATCGGTGGCGAAGACGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAGCGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTCAATCGACTGGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGAATTCCTCACTTAACTACTTATACGTTATAAGTGACAAGGTTAGTGATGACACATAAAAAGAAAAAAAAGGAAGATAAAGATTAGAATAAAATAGGCTTGGTTTCATAGCCTTCATACTTATTTCATGGTCAGTAAATTATTCGTTCTCTAAACTTCGTATAAAAAATTGTTTTAGTCCTTGCCAAAAGTGTTCATAAATAGTTAAACATAAGTTTAGGGGTGGGTTTCGAAACGAAATCGGATTTTTGGAAATGCTTTACGAAAATAGCTGCAAGGACTATAACAACTTTCTATGCAAAGTTTATGGACTAAAATAGTAAAACATTTCGAAGTTTAAAGATCAAAATAAAATATGCATGAAAGTTCGAATATCATAGTCGAGTTTAAACGAGTATAGCTGGAATTCTGTTCTCTATGATTCAATATAATTTTGTCCTTGTAGCTTTCTGTAGACTATGAAAGTATTTGTTCTTTTTGCCTCAAATCTTTAGATCATGAGTAGAAACAGCAAGGGAGGGTAGCTTCTGATGTAATATTATGAGGCAGATTTGGTGTATTATTTGGTTGTAATGTTTTTTTTGCGCAATGAAATTGGATTCGTAATGAAAAAACGAAACGAAATGAAAGGATACCTGAACACATTGTTGTACTGAGGCTG

Coding sequence (CDS)

TTTGTTCAGCAAAAAACGAAAGCATCTGCAAACGGCTGCTGTTCTTCCACAGCTGATCATGTCCTTACCTGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCCTCATTCTCAGCTGCGATTACCAACCTCTCGGACCTCGATTCTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGTCCACCGGATTTCTCTTCCCCTCTATTCGCCTTTGTTGTTTTTGTTCTCAATCTGCTCGATCTCTTCCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCGATTAGCTCCGACTTCGACATAATCGGTGGCGAAGACGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAGCGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTCAATCGACTGGATGACGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGA

Protein sequence

FVQQKTKASANGCCSSTADHVLTCRSFTAVPLFHSSFSAAITNLSDLDSLPFLANFSHPPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS

Homology

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BLAST of Carg23045 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 3.3e-67
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK 154
           QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK
Sbjct: 52  QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK 111

Query: 155 RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW 214
           RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW
Sbjct: 112 RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW 171

Query: 215 TGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           TGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Sbjct: 172 TGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of Carg23045 vs. NCBI nr
Match: XP_023530484.1 (LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 3.3e-67
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK 154
           QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK
Sbjct: 52  QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK 111

Query: 155 RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW 214
           RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW
Sbjct: 112 RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW 171

Query: 215 TGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           TGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Sbjct: 172 TGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of Carg23045 vs. NCBI nr
Match: XP_022927841.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 263.5 bits (672), Expect = 7.4e-67
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK 154
           QGVDHLVDDRRNWNRSISSDFDI+GGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK
Sbjct: 52  QGVDHLVDDRRNWNRSISSDFDIMGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK 111

Query: 155 RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW 214
           RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW
Sbjct: 112 RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW 171

Query: 215 TGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           TGILYLQDIRSHRF+RLDDDQHHAWTGAQPAS
Sbjct: 172 TGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of Carg23045 vs. NCBI nr
Match: XP_023553854.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo] >XP_023553855.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.4 bits (594), Expect = 8.2e-58
Identity = 138/155 (89.03%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIGG---EDXXXXXXXXXXXXXXXLDLLVRFVENVFRK 154
           QGVD+ VDDRRNWN SI SDFD+IGG     XXXXXXXXXXXXXXXLDLLV+FVENVFRK
Sbjct: 52  QGVDNPVDDRRNWNGSIGSDFDLIGGXXXXXXXXXXXXXXXXXXXXLDLLVQFVENVFRK 111

Query: 155 VSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIR 214
           VS+RARKAVRSVLPQSIPTKLVGF VNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIR
Sbjct: 112 VSRRARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIR 171

Query: 215 GVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           GVWTGILYLQDIRSHRF++LDDDQ HAWTGAQPAS
Sbjct: 172 GVWTGILYLQDIRSHRFDQLDDDQPHAWTGAQPAS 206

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BLAST of Carg23045 vs. NCBI nr
Match: XP_022148690.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia])

HSP 1 Score: 231.1 bits (588), Expect = 4.1e-57
Identity = 135/153 (88.24%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIGGED-XXXXXXXXXXXXXXXLDLLVRFVENVFRKVS 154
           QGVD+LVDDRRNWNR ISSDFDI+GGED XXXXXXXXXXXXXXX        ENVFRKVS
Sbjct: 54  QGVDNLVDDRRNWNRPISSDFDIVGGEDXXXXXXXXXXXXXXXXXXXXXXXXENVFRKVS 113

Query: 155 KRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGV 214
           KRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLW+LKAFL+VICTLGTAVFVSILIIRGV
Sbjct: 114 KRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGV 173

Query: 215 WTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           WTGILYLQDIRSHRF++LD++QHHAWTGAQPAS
Sbjct: 174 WTGILYLQDIRSHRFDQLDNEQHHAWTGAQPAS 206

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BLAST of Carg23045 vs. TAIR10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-42
Identity = 107/156 (68.59%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 92  DLFQGVDHLVDDRRNWNRSISSDFDIIGGED-XXXXXXXXXXXXXXXLDLLVRFVENVFR 151
           D   G D   DD R+WNR I  ++     ED XXXXXXXXXXXXXX LDLL+RFVENVFR
Sbjct: 51  DFINGRDDFADDTRSWNRKIKPEYGF--DEDYXXXXXXXXXXXXXXSLDLLLRFVENVFR 110

Query: 152 KVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILII 211
           K+SKRARKAVRS+LP SI TKLVGFSVNGVL+LAFLWILKAFLEV CTLGT VF SIL+I
Sbjct: 111 KISKRARKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLI 170

Query: 212 RGVWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           RG+W G+ Y+Q+ R++R N L DD   AW G QP S
Sbjct: 171 RGLWAGVAYMQESRNNRINELADDP-RAWNGMQPVS 203

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BLAST of Carg23045 vs. TAIR10
Match: AT1G69935.1 (short hypocotyl in white light1)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-16
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 138 LDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVIC 197
           +DLL+RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L I +AFLEVIC
Sbjct: 97  VDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVIC 156

Query: 198 TLGTAVFVSILIIRGVWTGILYLQ 222
            LG  VF  IL+IR  W    + Q
Sbjct: 157 NLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of Carg23045 vs. Swiss-Prot
Match: sp|F4I3V6|SHW1_ARATH (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-15
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 138 LDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVIC 197
           +DLL+RF+ ++F+KVSKR +KA R +LP ++  +LV F+V+G+L+L  L I +AFLEVIC
Sbjct: 97  VDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVIC 156

Query: 198 TLGTAVFVSILIIRGVWTGILYLQ 222
            LG  VF  IL+IR  W    + Q
Sbjct: 157 NLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of Carg23045 vs. TrEMBL
Match: tr|A0A0A0K2W4|A0A0A0K2W4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.5e-55
Identity = 134/154 (87.01%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIGGED--XXXXXXXXXXXXXXXLDLLVRFVENVFRKV 154
           QGVD+ VDDRRNWNR   SDFD+IGGE+  XXXXXXXXXXXXXXXLDLLVRFVEN+FRK 
Sbjct: 52  QGVDNFVDDRRNWNR---SDFDLIGGEEXXXXXXXXXXXXXXXXXLDLLVRFVENIFRKS 111

Query: 155 SKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRG 214
           S+RARKAVRSVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRG
Sbjct: 112 SRRARKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRG 171

Query: 215 VWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           VW GILYLQD RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 172 VWIGILYLQDTRSHRLGQLDDDQHHAWTGAQPAS 202

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BLAST of Carg23045 vs. TrEMBL
Match: tr|A0A1S3C0Q8|A0A1S3C0Q8_CUCME (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 130/154 (84.42%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIG--GEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKV 154
           QGVD+ VD+RRNWNR   SDFD+IG     XXXXXXXXXXXXX  LDLLVRFVENVFRK 
Sbjct: 52  QGVDNFVDERRNWNR---SDFDLIGXXXXXXXXXXXXXXXXXXRSLDLLVRFVENVFRKS 111

Query: 155 SKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRG 214
           S+RARKAVRSVLPQSIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRG
Sbjct: 112 SRRARKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRG 171

Query: 215 VWTGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           VW GILYLQD RSHR  + DDDQHHAWTGAQPAS
Sbjct: 172 VWIGILYLQDTRSHRLEQFDDDQHHAWTGAQPAS 202

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BLAST of Carg23045 vs. TrEMBL
Match: tr|A0A1R3GZ92|A0A1R3GZ92_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_32481 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.3e-42
Identity = 111/152 (73.03%), Postives = 127/152 (83.55%), Query Frame = 0


Query: 95  QGVDHLVDDRRNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSK 154
           QG D+LVD  RNW+RSI+S+F       XXXXXXXXXXXXXXXLDLLVRFVENVFRK+SK
Sbjct: 48  QGTDNLVDGPRNWSRSITSEF------XXXXXXXXXXXXXXXXLDLLVRFVENVFRKLSK 107

Query: 155 RARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVW 214
           RARKAVR+VLP SI +KLVGFSVNGVL+LAFLW+LKAFLEV+CTLG+ VFVSIL+IRG+W
Sbjct: 108 RARKAVRAVLPVSISSKLVGFSVNGVLVLAFLWVLKAFLEVVCTLGSVVFVSILLIRGIW 167

Query: 215 TGILYLQDIRSHRFNRLDDDQHHAWTGAQPAS 247
           TG+ YLQ+ R  R N   DDQ  AW GAQP +
Sbjct: 168 TGVTYLQESRDRRINEFVDDQ-SAWNGAQPVT 192

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BLAST of Carg23045 vs. TrEMBL
Match: tr|A0A061E0E9|A0A061E0E9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007264 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 117/198 (59.09%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 52  FLANFSH--PPPGFQKNLQFLSGPPDFSSPLFAFVVFVLNLLDLFQGVDHLVDDRRNWNR 111
           FLA F +  PP  F  N + L       +  F  ++    + +  QG D+LVD  RNW R
Sbjct: 11  FLAGFPYRKPPSHFFSNPKILL----LKTHSFQLLLASRRIPNFPQGTDNLVDGPRNWGR 70

Query: 112 SISSDF-DIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSKRARKAVRSVLPQSI 171
           SI+S+F D      XXXXXXXXXXXXXXX   L+RFV+NVFRK+SKRARKAVR+VLP SI
Sbjct: 71  SITSEFDDXXXXXXXXXXXXXXXXXXXXXXXXLIRFVQNVFRKISKRARKAVRAVLPVSI 130

Query: 172 PTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRF 231
            TKLVGFSVNGVLMLAFLW+LKAFLEV+CTLG+ VFVS+L+IRG+W G+ Y+Q+ R  R 
Sbjct: 131 STKLVGFSVNGVLMLAFLWVLKAFLEVVCTLGSIVFVSVLLIRGIWMGVTYVQESRDQRI 190

Query: 232 NRLDDDQHHAWTGAQPAS 247
           N L DDQ  AWTG  PA+
Sbjct: 191 NELVDDQ-RAWTGTHPAT 203

[Close]

BLAST of Carg23045 vs. TrEMBL
Match: tr|A0A0B0NWW4|A0A0B0NWW4_GOSAR (ATP phosphoribosyltransferase regulatory subunit OS=Gossypium arboreum OX=29729 GN=F383_00468 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 116/202 (57.43%), Postives = 145/202 (71.78%), Query Frame = 0


Query: 49  SLPFLANFSH--PPPGFQKNLQFLSGPPD--FSSPLFAFVVFVLNLLDLFQGVDHLVDDR 108
           S PFL  F +  PPP       F   P    F S  F  ++    + +  QG+D+LVD  
Sbjct: 8   SPPFLTIFPNKKPPP-----FHFSCNPKTLRFKSHSFQPLLASRRIPNYPQGIDNLVDGP 67

Query: 109 RNWNRSISSDFDIIGGEDXXXXXXXXXXXXXXXLDLLVRFVENVFRKVSKRARKAVRSVL 168
           RNW+RSI+S+F       XXXXXXXXXXXXXX LDLLVRFV+NVFRK+SKRARKA+R++L
Sbjct: 68  RNWSRSITSEF-------XXXXXXXXXXXXXXSLDLLVRFVQNVFRKISKRARKALRAIL 127

Query: 169 PQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIR 228
           P SI TKLVGFSV+GVL+LAFLW+LKAFLEV+CTLG+AVFV+IL+IRG+WTG+ ++Q+ R
Sbjct: 128 PISISTKLVGFSVDGVLILAFLWVLKAFLEVVCTLGSAVFVTILLIRGIWTGVTFMQESR 187

Query: 229 SHRFNRLDDDQHHAWTGAQPAS 247
            HR      D   +W GAQPA+
Sbjct: 188 DHRRINEPFDDPRSWNGAQPAT 197

The following BLAST results are available for this feature:

BLAST of Carg23045 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988955.1	3.3e-67	99.34	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
XP_023530484.1	3.3e-67	99.34	LOW QUALITY PROTEIN: protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pe...	[more]
XP_022927841.1	7.4e-67	98.68	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]	[more]
XP_023553854.1	8.2e-58	89.03	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022148690.1	4.1e-57	88.24	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia]	[more]

BLAST of Carg23045 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33780.1	1.5e-42	68.59	FUNCTIONS IN: molecular_function unknown	[more]
AT1G69935.1	4.2e-16	50.00	short hypocotyl in white light1	[more]

BLAST of Carg23045 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4I3V6\|SHW1_ARATH	7.6e-15	50.00	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of Carg23045 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2W4\|A0A0A0K2W4_CUCSA	1.5e-55	87.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1	[more]
tr\|A0A1S3C0Q8\|A0A1S3C0Q8_CUCME	1.4e-53	84.42	uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=...	[more]
tr\|A0A1R3GZ92\|A0A1R3GZ92_9ROSI	9.3e-42	73.03	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_32481 PE=4 SV=1	[more]
tr\|A0A061E0E9\|A0A061E0E9_THECC	1.0e-40	59.09	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007264 PE=4 SV=1	[more]
tr\|A0A0B0NWW4\|A0A0B0NWW4_GOSAR	5.1e-40	57.43	ATP phosphoribosyltransferase regulatory subunit OS=Gossypium arboreum OX=29729 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010100	negative regulation of photomorphogenesis
GO:0009787	regulation of abscisic acid-activated signaling pathway

Vocabulary: **INTERPRO**
Term	Definition
IPR039324	SHW1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23045-RA	Carg23045-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35474:SF1	SUBFAMILY NOT NAMED	coord: 95..245
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	FAMILY NOT NAMED	coord: 95..245

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23045	Cla001614	Watermelon (97103) v1	carwmB0733
Carg23045	Csa7G070780	Cucumber (Chinese Long) v2	carcuB0751
Carg23045	MELO3C018531	Melon (DHL92) v3.5.1	carmeB0726
Carg23045	ClCG02G007130	Watermelon (Charleston Gray)	carwcgB0711
Carg23045	CSPI07G06730	Wild cucumber (PI 183967)	carcpiB0767
Carg23045	Cucsa.219030	Cucumber (Gy14) v1	carcgyB0825
Carg23045	CmaCh19G005400	Cucurbita maxima (Rimu)	carcmaB1026
Carg23045	CmaCh11G016920	Cucurbita maxima (Rimu)	carcmaB1025
Carg23045	CmoCh19G005540	Cucurbita moschata (Rifu)	carcmoB0998
Carg23045	CmoCh11G014280	Cucurbita moschata (Rifu)	carcmoB0997
Carg23045	Lsi03G005990	Bottle gourd (USVL1VR-Ls)	carlsiB672
Carg23045	Cp4.1LG15g04310	Cucurbita pepo (Zucchini)	carcpeB1031
Carg23045	Cp4.1LG04g07520	Cucurbita pepo (Zucchini)	carcpeB1033
Carg23045	CsGy7G006280	Cucumber (Gy14) v2	carcgybB0729
Carg23045	MELO3C018531.2	Melon (DHL92) v3.6.1	carmedB0737
Carg23045	CsaV3_7G007690	Cucumber (Chinese Long) v3	carcucB0770
Carg23045	Cla97C02G033970	Watermelon (97103) v2	carwmbB0766

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23045	Carg16318	Silver-seed gourd	carcarB456

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23045	Silver-seed gourd	carcarB404
Carg23045	Cucurbita maxima (Rimu)	carcmaB1027
Carg23045	Cucurbita moschata (Rifu)	carcmoB0999
Carg23045	Cucurbita pepo (Zucchini)	carcpeB1032
Carg23045	Bottle gourd (USVL1VR-Ls)	carlsiB673