Cucsa.025370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.025370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nuclear transcription factor Y subunit B
Location	scaffold00345 : 222808 .. 223261 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCTACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTtACTtCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATA

mRNA sequence

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCTACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCaataata

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCTACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTtACTtCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATA

Protein sequence

MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNX

Homology

[Close]

BLAST of Cucsa.025370 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.6e-42
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of Cucsa.025370 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 4.2e-40
Identity = 78/121 (64.46%), Postives = 95/121 (78.51%), Query Frame = 1


Query: 20  GGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           GGGS   G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+
Sbjct: 11  GGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 70

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEG 139
           QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG
Sbjct: 71  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 130

Query: 140 E 141
           +
Sbjct: 131 D 131

[Close]

BLAST of Cucsa.025370 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.9e-39
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 1


Query: 23  SSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 82
           S G GG +  S    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QEC
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 66

Query: 83  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 141
           VSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG+
Sbjct: 67  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]

BLAST of Cucsa.025370 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-38
Identity = 80/125 (64.00%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS            KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 AQQNK 147
               K
Sbjct: 131 VNSPK 135

[Close]

BLAST of Cucsa.025370 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-38
Identity = 80/129 (62.02%), Postives = 96/129 (74.42%), Query Frame = 1


Query: 19  TGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKET 78
           T    +G GG +GGS           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T
Sbjct: 4   TPSSPAGDGGESGGS-----------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDT 63

Query: 79  MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDME 138
           +QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++E
Sbjct: 64  VQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELE 117

Query: 139 GERAQQNKG 148
           G+    NKG
Sbjct: 124 GD----NKG 117

[Close]

BLAST of Cucsa.025370 vs. TrEMBL
Match: A0A0A0K954_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.6e-81
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAG GVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 152
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 151

[Close]

BLAST of Cucsa.025370 vs. TrEMBL
Match: A0A0H3XV97_VERFO (Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 102/120 (85.00%), Postives = 107/120 (89.17%), Query Frame = 1


Query: 31  GGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   G G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YR+ EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKGSNN 137

[Close]

BLAST of Cucsa.025370 vs. TrEMBL
Match: I1L7X0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 107/147 (72.79%), Postives = 117/147 (79.59%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKG 148
           DDY+EPL+RYL +YR+MEGERA QNKG
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKG 134

[Close]

BLAST of Cucsa.025370 vs. TrEMBL
Match: A0A0B2P810_GLYSO (Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 107/147 (72.79%), Postives = 117/147 (79.59%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKG 148
           DDY+EPL+RYL +YR+MEGERA QNKG
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKG 134

[Close]

BLAST of Cucsa.025370 vs. TrEMBL
Match: A0A0L9TWP1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g107600 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.4e-49
Identity = 102/133 (76.69%), Postives = 109/133 (81.95%), Query Frame = 1


Query: 14  FKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISK 73
           FKY+FT   S+     T            GV+KEQDRLLPIANVGRIMKQ LPPNAKISK
Sbjct: 16  FKYNFTCSTSTATASDTSAQD--------GVIKEQDRLLPIANVGRIMKQTLPPNAKISK 75

Query: 74  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVR 133
           EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL +
Sbjct: 76  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHK 135

Query: 134 YRDMEGERAQQNK 147
           YR++EGERA QNK
Sbjct: 136 YRELEGERATQNK 140

[Close]

BLAST of Cucsa.025370 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-43
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of Cucsa.025370 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 161.0 bits (406), Expect = 5.8e-40
Identity = 80/125 (64.00%), Postives = 92/125 (73.60%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS            KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 AQQNK 147
               K
Sbjct: 131 VNSPK 135

[Close]

BLAST of Cucsa.025370 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-39
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 1


Query: 20  GGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           G      GG   G+++     +    +EQDR LPIANV RIMK+ LP NAKISK+AKETM
Sbjct: 2   GDSDRDSGGGQNGNNQNGQSSLSP--REQDRFLPIANVSRIMKKALPANAKISKDAKETM 61

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEG 139
           QECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+R++EG
Sbjct: 62  QECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEG 121

Query: 140 ER 142
           ER
Sbjct: 122 ER 121

[Close]

BLAST of Cucsa.025370 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-39
Identity = 80/129 (62.02%), Postives = 96/129 (74.42%), Query Frame = 1


Query: 19  TGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKET 78
           TGGG  G   S G  S  +       V+EQDR LPIAN+ RIMK+ LP N KI+K+AKET
Sbjct: 6   TGGGGGGSHESGGDQSPRSLN-----VREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 65

Query: 79  MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDME 138
           MQECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYR+ME
Sbjct: 66  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 125

Query: 139 GERAQQNKG 148
           G+     KG
Sbjct: 126 GDTKGSGKG 129

[Close]

BLAST of Cucsa.025370 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-38
Identity = 73/110 (66.36%), Postives = 91/110 (82.73%), Query Frame = 1


Query: 34  SEEAGYGVGG--VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           ++  G+  GG    +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+T
Sbjct: 6   NDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           GEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YR++EGE+
Sbjct: 66  GEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of Cucsa.025370 vs. NCBI nr
Match: gi|778727953|ref|XP_011659350.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 3.7e-81
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAG GVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 152
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 151

[Close]

BLAST of Cucsa.025370 vs. NCBI nr
Match: gi|659101456|ref|XP_008451614.1| (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 4.9e-81
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGSTGGSSEEAG GVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 152
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 151

[Close]

BLAST of Cucsa.025370 vs. NCBI nr
Match: gi|951018285|ref|XP_014511739.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Vigna radiata var. radiata])

HSP 1 Score: 204.9 bits (520), Expect = 9.9e-50
Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = 1


Query: 14  FKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISK 73
           FKY+FT   S+    ++  S+++      GV+KEQDRLLPIANVGRIMKQ LPPNAKISK
Sbjct: 16  FKYNFTSSTSTATATASDTSAQD------GVIKEQDRLLPIANVGRIMKQTLPPNAKISK 75

Query: 74  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVR 133
           EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL +
Sbjct: 76  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHK 135

Query: 134 YRDMEGERAQQNK 147
           YR++EGERA QNK
Sbjct: 136 YRELEGERATQNK 142

[Close]

BLAST of Cucsa.025370 vs. NCBI nr
Match: gi|837378381|gb|AKM95036.1| (nuclear transcription factor Y subunit B-9 [Vernicia fordii])

HSP 1 Score: 204.1 bits (518), Expect = 1.7e-49
Identity = 102/120 (85.00%), Postives = 107/120 (89.17%), Query Frame = 1


Query: 31  GGSSEEAGYGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   G G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YR+ EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKGSNN 137

[Close]

BLAST of Cucsa.025370 vs. NCBI nr
Match: gi|356536735|ref|XP_003536891.1| (PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max])

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-49
Identity = 107/147 (72.79%), Postives = 117/147 (79.59%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGYGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKG 148
           DDY+EPL+RYL +YR+MEGERA QNKG
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKG 134

The following BLAST results are available for this feature:

BLAST of Cucsa.025370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB5_ARATH	7.6e-42	84.69	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2...	[more]
NFYB3_ORYSJ	4.2e-40	64.46	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB_MAIZE	7.9e-39	64.41	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB7_ARATH	1.0e-38	64.00	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB1_ARATH	5.1e-38	62.02	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]

BLAST of Cucsa.025370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K954_CUCSA	2.6e-81	99.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1	[more]
A0A0H3XV97_VERFO	1.2e-49	85.00	Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1	[more]
I1L7X0_SOYBN	1.5e-49	72.79	Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1	[more]
A0A0B2P810_GLYSO	1.5e-49	72.79	Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=...	[more]
A0A0L9TWP1_PHAAN	3.4e-49	76.69	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g107600 PE=4 SV=1	[more]

BLAST of Cucsa.025370 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47810.1	4.3e-43	84.69	nuclear factor Y, subunit B5	[more]
AT2G13570.1	5.8e-40	64.00	nuclear factor Y, subunit B7	[more]
AT5G47640.1	4.9e-39	63.93	nuclear factor Y, subunit B2	[more]
AT3G53340.1	4.9e-39	62.02	nuclear factor Y, subunit B10	[more]
AT4G14540.1	9.2e-38	66.36	nuclear factor Y, subunit B3	[more]

BLAST of Cucsa.025370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727953\|ref\|XP_011659350.1\|	3.7e-81	99.34	PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
gi\|659101456\|ref\|XP_008451614.1\|	4.9e-81	98.68	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
gi\|951018285\|ref\|XP_014511739.1\|	9.9e-50	76.69	PREDICTED: nuclear transcription factor Y subunit B-5 [Vigna radiata var. radiat...	[more]
gi\|837378381\|gb\|AKM95036.1\|	1.7e-49	85.00	nuclear transcription factor Y subunit B-9 [Vernicia fordii]	[more]
gi\|356536735\|ref\|XP_003536891.1\|	2.2e-49	72.79	PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.025370.1	Cucsa.025370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 score: 1.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 44..146 score: 3.5
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 48..146 score: 6.52
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 1.0E-17coord: 98..116 score: 1.0E-17coord: 79..97 score: 1.0
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 29..146 score: 2.5
None	No IPR available	PANTHER	PTHR11064:SF42	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 29..146 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.025370	Cla014682	Watermelon (97103) v1	cgywmB672
Cucsa.025370	Csa7G395250	Cucumber (Chinese Long) v2	cgycuB519
Cucsa.025370	MELO3C016042	Melon (DHL92) v3.5.1	cgymeB604
Cucsa.025370	ClCG09G006170	Watermelon (Charleston Gray)	cgywcgB634
Cucsa.025370	CSPI07G17200	Wild cucumber (PI 183967)	cgycpiB548
Cucsa.025370	CmaCh17G011110	Cucurbita maxima (Rimu)	cgycmaB1030
Cucsa.025370	CmoCh17G010870	Cucurbita moschata (Rifu)	cgycmoB1028
Cucsa.025370	Lsi02G023730	Bottle gourd (USVL1VR-Ls)	cgylsiB601
Cucsa.025370	Cp4.1LG12g05460	Cucurbita pepo (Zucchini)	cgycpeB0983
Cucsa.025370	MELO3C016042.2	Melon (DHL92) v3.6.1	cgymedB601
Cucsa.025370	CsaV3_7G028980	Cucumber (Chinese Long) v3	cgycucB563
Cucsa.025370	Cla97C09G168740	Watermelon (97103) v2	cgywmbB640
Cucsa.025370	BhiUN245G60	Wax gourd	cgywgoB746

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.025370	Cucurbita maxima (Rimu)	cgycmaB1031
Cucsa.025370	Cucurbita moschata (Rifu)	cgycmoB1029
Cucsa.025370	Cucurbita pepo (Zucchini)	cgycpeB0984
Cucsa.025370	Silver-seed gourd	carcgyB0135
Cucsa.025370	Silver-seed gourd	carcgyB0981