Csa7G395250 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G395250
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Nuclear transcription factor Y subunit B6; contains IPR003957 (Transcription factor, CBFA/NFYB, DNA topoisomerase), IPR009072 (Histone-fold)
Location	Chr7 : 15134980 .. 15135499 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATAGTAATAATAATAATAACAACGATGGATGAGAGAAATAATTGGAGAAATTTGCCTCAAACGATTTGG

mRNA sequence

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATAGTAATAATAATAATAACAACGATGGATGA

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATAGTAATAATAATAATAACAACGATGGATGA

Protein sequence

MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG*

Homology

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BLAST of Csa7G395250 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-42
Identity = 87/113 (76.99%), Postives = 95/113 (84.07%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQN-KGCCNNSNNN 156
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   +S +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

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BLAST of Csa7G395250 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-40
Identity = 78/121 (64.46%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 20  GGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           GGGS   G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+
Sbjct: 11  GGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 70

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEG 139
           QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG
Sbjct: 71  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 130

Query: 140 E 141
           +
Sbjct: 131 D 131

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BLAST of Csa7G395250 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-39
Identity = 81/125 (64.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 AQQNK 147
               K
Sbjct: 131 VNSPK 135

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BLAST of Csa7G395250 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-39
Identity = 81/129 (62.79%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++EG+    NKG   +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 SNNNNNNDG 161
            + +N + G
Sbjct: 126 GDGSNRDAG 130

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BLAST of Csa7G395250 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.7e-39
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 1


Query: 23  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 82
           S G GG +  S    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QEC
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 66

Query: 83  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 141
           VSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG+
Sbjct: 67  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

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BLAST of Csa7G395250 vs. TrEMBL
Match: A0A0A0K954_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-88
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 161
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 160

[Close]

BLAST of Csa7G395250 vs. TrEMBL
Match: A0A0H3XV97_VERFO (Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-50
Identity = 105/129 (81.40%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YR+ EGERA  NKG   
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKG--- 138

Query: 151 NSNNNNNND 160
            SNN    D
Sbjct: 139 -SNNEERED 142

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BLAST of Csa7G395250 vs. TrEMBL
Match: A0A067K777_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13881 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-50
Identity = 104/128 (81.25%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S  +G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGAS--SGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL RYR+ EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYREQEGERA-SNKGSNN 138

Query: 151 NSNNNNNN 159
             N++++N
Sbjct: 139 EENDDSSN 143

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BLAST of Csa7G395250 vs. TrEMBL
Match: I1L7X0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

[Close]

BLAST of Csa7G395250 vs. TrEMBL
Match: A0A0B2P810_GLYSO (Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

[Close]

BLAST of Csa7G395250 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-43
Identity = 87/113 (76.99%), Postives = 95/113 (84.07%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQN-KGCCNNSNNN 156
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   +S +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of Csa7G395250 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 164.1 bits (414), Expect = 7.2e-41
Identity = 81/125 (64.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 AQQNK 147
               K
Sbjct: 131 VNSPK 135

[Close]

BLAST of Csa7G395250 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-40
Identity = 81/129 (62.79%), Postives = 95/129 (73.64%), Query Frame = 1


Query: 19  TGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKET 78
           TGGG  G   S G  S  + N     V+EQDR LPIAN+ RIMK+ LP N KI+K+AKET
Sbjct: 6   TGGGGGGSHESGGDQSPRSLN-----VREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 65

Query: 79  MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDME 138
           MQECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYR+ME
Sbjct: 66  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 125

Query: 139 GERAQQNKG 148
           G+     KG
Sbjct: 126 GDTKGSGKG 129

[Close]

BLAST of Csa7G395250 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-39
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 20  GGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           G      GG   G+++   + +    +EQDR LPIANV RIMK+ LP NAKISK+AKETM
Sbjct: 2   GDSDRDSGGGQNGNNQNGQSSLSP--REQDRFLPIANVSRIMKKALPANAKISKDAKETM 61

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEG 139
           QECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+R++EG
Sbjct: 62  QECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEG 121

Query: 140 ER 142
           ER
Sbjct: 122 ER 121

[Close]

BLAST of Csa7G395250 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-38
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 32  GSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 91
           G  ++ GN      +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+T
Sbjct: 9   GGHKDGGNAS---TREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFIT 68

Query: 92  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           GEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YR++EGE+
Sbjct: 69  GEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of Csa7G395250 vs. NCBI nr
Match: gi|778727953|ref|XP_011659350.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 4.4e-88
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 161
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 160

[Close]

BLAST of Csa7G395250 vs. NCBI nr
Match: gi|659101456|ref|XP_008451614.1| (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 326.6 bits (836), Expect = 2.4e-86
Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNND 160
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+NNNNNN+
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 159

[Close]

BLAST of Csa7G395250 vs. NCBI nr
Match: gi|802688624|ref|XP_012082708.1| (PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas])

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50
Identity = 104/128 (81.25%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S  +G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGAS--SGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL RYR+ EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYREQEGERA-SNKGSNN 138

Query: 151 NSNNNNNN 159
             N++++N
Sbjct: 139 EENDDSSN 143

[Close]

BLAST of Csa7G395250 vs. NCBI nr
Match: gi|837378381|gb|AKM95036.1| (nuclear transcription factor Y subunit B-9 [Vernicia fordii])

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50
Identity = 105/129 (81.40%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YR+ EGERA  NKG   
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKG--- 138

Query: 151 NSNNNNNND 160
            SNN    D
Sbjct: 139 -SNNEERED 142

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BLAST of Csa7G395250 vs. NCBI nr
Match: gi|356536735|ref|XP_003536891.1| (PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max])

HSP 1 Score: 206.5 bits (524), Expect = 3.6e-50
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

The following BLAST results are available for this feature:

BLAST of Csa7G395250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB5_ARATH	3.6e-42	76.99	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2...	[more]
NFYB3_ORYSJ	2.0e-40	64.46	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB7_ARATH	1.3e-39	64.80	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB1_ARATH	2.2e-39	62.79	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]
NFYB_MAIZE	3.7e-39	64.41	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]

BLAST of Csa7G395250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K954_CUCSA	3.0e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1	[more]
A0A0H3XV97_VERFO	1.5e-50	81.40	Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1	[more]
A0A067K777_JATCU	1.5e-50	81.25	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13881 PE=4 SV=1	[more]
I1L7X0_SOYBN	2.5e-50	70.06	Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1	[more]
A0A0B2P810_GLYSO	2.5e-50	70.06	Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=...	[more]

BLAST of Csa7G395250 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47810.1	2.0e-43	76.99	nuclear factor Y, subunit B5	[more]
AT2G13570.1	7.2e-41	64.80	nuclear factor Y, subunit B7	[more]
AT3G53340.1	6.1e-40	62.79	nuclear factor Y, subunit B10	[more]
AT5G47640.1	2.3e-39	63.93	nuclear factor Y, subunit B2	[more]
AT4G14540.1	7.5e-38	66.36	nuclear factor Y, subunit B3	[more]

BLAST of Csa7G395250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727953\|ref\|XP_011659350.1\|	4.4e-88	100.00	PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
gi\|659101456\|ref\|XP_008451614.1\|	2.4e-86	98.11	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
gi\|802688624\|ref\|XP_012082708.1\|	2.1e-50	81.25	PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]	[more]
gi\|837378381\|gb\|AKM95036.1\|	2.1e-50	81.40	nuclear transcription factor Y subunit B-9 [Vernicia fordii]	[more]
gi\|356536735\|ref\|XP_003536891.1\|	3.6e-50	70.06	PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G395250.1	Csa7G395250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 score: 1.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 44..150 score: 1.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 48..153 score: 2.02
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 1.1E-17coord: 79..97 score: 1.1E-17coord: 98..116 score: 1.1
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 29..160 score: 8.1
None	No IPR available	PANTHER	PTHR11064:SF42	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 29..160 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G395250	Cla014682	Watermelon (97103) v1	cuwmB568
Csa7G395250	MELO3C016042	Melon (DHL92) v3.5.1	cumeB532
Csa7G395250	ClCG09G006170	Watermelon (Charleston Gray)	cuwcgB526
Csa7G395250	Lsi02G023730	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G395250	MELO3C016042.2	Melon (DHL92) v3.6.1	cumedB511
Csa7G395250	Cla97C09G168740	Watermelon (97103) v2	cuwmbB572
Csa7G395250	BhiUN245G60	Wax gourd	cuwgoB653
Csa7G395250	CSPI07G17200	Wild cucumber (PI 183967)	cpicuB354
Csa7G395250	Cucsa.025370	Cucumber (Gy14) v1	cgycuB519
Csa7G395250	CmaCh17G011110	Cucurbita maxima (Rimu)	cmacuB388
Csa7G395250	CmoCh17G010870	Cucurbita moschata (Rifu)	cmocuB378
Csa7G395250	Cp4.1LG12g05460	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G395250	CsGy7G015620	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G395250	Watermelon (97103) v1	cuwmB588
Csa7G395250	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G395250	Silver-seed gourd	carcuB0119
Csa7G395250	Silver-seed gourd	carcuB0876
Csa7G395250	Watermelon (97103) v2	cuwmbB539
Csa7G395250	Wax gourd	cuwgoB657
Csa7G395250	Cucurbita maxima (Rimu)	cmacuB914
Csa7G395250	Cucurbita moschata (Rifu)	cmocuB900