Cp4.1LG12g05460 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g05460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNuclear transcription factor Y subunit B
LocationCp4.1LG12 : 8091978 .. 8092448 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGTGGCGGCGGCGGAGTTGGTGGTAGTACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCTGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCTACGCTTGGGTTCGACGATTATGCCGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATACTCATGATGCATGA

mRNA sequence

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGTGGCGGCGGCGGAGTTGGTGGTAGTACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCTGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCTACGCTTGGGTTCGACGATTATGCCGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATACTCATGATGCATGA

Coding sequence (CDS)

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGTGGCGGCGGCGGAGTTGGTGGTAGTACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCTGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCTACGCTTGGGTTCGACGATTATGCCGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATACTCATGATGCATGA

Protein sequence

MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA
Homology
[Close]
BLAST of Cp4.1LG12g05460 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-42
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1 

Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRK
Sbjct: 49  VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           TVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]
BLAST of Cp4.1LG12g05460 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 5.2e-38
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

[Close]
BLAST of Cp4.1LG12g05460 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-38
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1 

Query: 27  GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++   S +    +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSSLSP--REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           ISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REIEGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]
BLAST of Cp4.1LG12g05460 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 8.9e-38
Identity = 79/123 (64.23%), Postives = 96/123 (78.05%), Query Frame = 1 

Query: 21  GGGGGV---GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKE 80
           GGGGG    G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKE
Sbjct: 9   GGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKE 68

Query: 81  TMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREI 140
           T+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YRE+
Sbjct: 69  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREM 128

[Close]
BLAST of Cp4.1LG12g05460 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.4e-37
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 1 

Query: 24  GGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECV 83
           GG GGS    S   G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECV
Sbjct: 9   GGGGGSHESGSPRGGGG-GGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECV 68

Query: 84  SEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGE 141
           SEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YRE+EG+
Sbjct: 69  SEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]
BLAST of Cp4.1LG12g05460 vs. TrEMBL
Match: A0A0A0K954_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.8e-74
Identity = 138/155 (89.03%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER +EFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHD 156
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNN+ ++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNN 155

[Close]
BLAST of Cp4.1LG12g05460 vs. TrEMBL
Match: A0A0H3XV97_VERFO (Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.1e-49
Identity = 105/125 (84.00%), Postives = 108/125 (86.40%), Query Frame = 1 

Query: 31  GGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   GSG  G +KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YRE EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKGSNN 138

Query: 151 NNTHD 156
               D
Sbjct: 139 EERED 142

[Close]
BLAST of Cp4.1LG12g05460 vs. TrEMBL
Match: A0A0R0KWV4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G154000 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 106/142 (74.65%), Postives = 113/142 (79.58%), Query Frame = 1 

Query: 14  FKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISK 73
           FKY+FT          T    E         +KEQDRLLPIANVGRIMKQILPPNAKISK
Sbjct: 15  FKYNFTAAAS-----DTSAQDE--------VIKEQDRLLPIANVGRIMKQILPPNAKISK 74

Query: 74  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIR 133
           EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFDDY+EPL+RYL +
Sbjct: 75  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLHK 134

Query: 134 YREIEGERAQQNKGCCNNNTHD 156
           YRE EGERA QNKG  NNNT++
Sbjct: 135 YREFEGERANQNKG--NNNTYE 141

[Close]
BLAST of Cp4.1LG12g05460 vs. TrEMBL
Match: F6HPZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01640 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 106/152 (69.74%), Postives = 117/152 (76.97%), Query Frame = 1 

Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           +DD     +R  + KY++            GGSS  A  GI   +KEQDRLLPIANVGRI
Sbjct: 2   VDDIGTNADRDYDHKYNYA-----------GGSSVSAEDGI---IKEQDRLLPIANVGRI 61

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC AL TLGF
Sbjct: 62  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGTLGF 121

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPL+RYL RYRE+EGE+A Q+K    N+
Sbjct: 122 DDYAEPLKRYLHRYRELEGEKANQSKASEEND 139

[Close]
BLAST of Cp4.1LG12g05460 vs. TrEMBL
Match: V7BJ21_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G165100g PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-48
Identity = 105/143 (73.43%), Postives = 115/143 (80.42%), Query Frame = 1 

Query: 14  FKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISK 73
           FKY FT+        ST  +S+ +     G +KEQDRLLPIANVGRIMKQ LPPNAKISK
Sbjct: 16  FKYSFTS--------STATASDTSEQD--GVIKEQDRLLPIANVGRIMKQTLPPNAKISK 75

Query: 74  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIR 133
           EA+ETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL +
Sbjct: 76  EARETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHK 135

Query: 134 YREIEGERAQQNKGCCNNNTHDA 157
           YRE+EGERA QNKG    N + A
Sbjct: 136 YRELEGERANQNKGNSYENNNIA 148

[Close]
BLAST of Cp4.1LG12g05460 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1 

Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRK
Sbjct: 49  VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           TVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]
BLAST of Cp4.1LG12g05460 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 158.3 bits (399), Expect = 3.8e-39
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1 

Query: 27  GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++   S +    +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSSLSP--REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           ISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REIEGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]
BLAST of Cp4.1LG12g05460 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 80/128 (62.50%), Postives = 96/128 (75.00%), Query Frame = 1 

Query: 20  TGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           TGGGGG    +GG            V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETM
Sbjct: 6   TGGGGGGSHESGGDQSPRSLN----VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETM 65

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEG 139
           QECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYRE+EG
Sbjct: 66  QECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEG 125

Query: 140 ERAQQNKG 148
           +     KG
Sbjct: 126 DTKGSGKG 129

[Close]
BLAST of Cp4.1LG12g05460 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-38
Identity = 71/96 (73.96%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 46  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 105
           +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 106 VNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           +NGDD+  A+ TLGF+DY EPL+ YL +YRE+EGE+
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]
BLAST of Cp4.1LG12g05460 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 154.1 bits (388), Expect = 7.2e-38
Identity = 75/106 (70.75%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREI 138
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111

[Close]
BLAST of Cp4.1LG12g05460 vs. NCBI nr
Match: gi|659101456|ref|XP_008451614.1| (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 5.3e-75
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER VEFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHD 156
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNNN ++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNN 155

[Close]
BLAST of Cp4.1LG12g05460 vs. NCBI nr
Match: gi|778727953|ref|XP_011659350.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 2.7e-74
Identity = 138/155 (89.03%), Postives = 148/155 (95.48%), Query Frame = 1 

Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER +EFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHD 156
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNN+ ++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNN 155

[Close]
BLAST of Cp4.1LG12g05460 vs. NCBI nr
Match: gi|837378381|gb|AKM95036.1| (nuclear transcription factor Y subunit B-9 [Vernicia fordii])

HSP 1 Score: 203.4 bits (516), Expect = 3.0e-49
Identity = 105/125 (84.00%), Postives = 108/125 (86.40%), Query Frame = 1 

Query: 31  GGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   GSG  G +KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YRE EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKGSNN 138

Query: 151 NNTHD 156
               D
Sbjct: 139 EERED 142

[Close]
BLAST of Cp4.1LG12g05460 vs. NCBI nr
Match: gi|356500286|ref|XP_003518964.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Glycine max])

HSP 1 Score: 201.1 bits (510), Expect = 1.5e-48
Identity = 106/142 (74.65%), Postives = 113/142 (79.58%), Query Frame = 1 

Query: 14  FKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISK 73
           FKY+FT          T    E         +KEQDRLLPIANVGRIMKQILPPNAKISK
Sbjct: 15  FKYNFTAAAS-----DTSAQDE--------VIKEQDRLLPIANVGRIMKQILPPNAKISK 74

Query: 74  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIR 133
           EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFDDY+EPL+RYL +
Sbjct: 75  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLHK 134

Query: 134 YREIEGERAQQNKGCCNNNTHD 156
           YRE EGERA QNKG  NNNT++
Sbjct: 135 YREFEGERANQNKG--NNNTYE 141

[Close]
BLAST of Cp4.1LG12g05460 vs. NCBI nr
Match: gi|731395039|ref|XP_010652046.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Vitis vinifera])

HSP 1 Score: 199.9 bits (507), Expect = 3.3e-48
Identity = 106/152 (69.74%), Postives = 117/152 (76.97%), Query Frame = 1 

Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           +DD     +R  + KY++            GGSS  A  GI   +KEQDRLLPIANVGRI
Sbjct: 2   VDDIGTNADRDYDHKYNYA-----------GGSSVSAEDGI---IKEQDRLLPIANVGRI 61

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC AL TLGF
Sbjct: 62  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGTLGF 121

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPL+RYL RYRE+EGE+A Q+K    N+
Sbjct: 122 DDYAEPLKRYLHRYRELEGEKANQSKASEEND 139

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g05460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB5_ARATH2.7e-4285.57Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2... [more]
NFYB1_ARATH5.2e-3865.29Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1... [more]
NFYB2_ARATH6.8e-3869.57Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB3_ORYSJ8.9e-3864.23Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
NFYB_MAIZE3.4e-3765.81Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
BLAST of Cp4.1LG12g05460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K954_CUCSA1.8e-7489.03Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1[more]
A0A0H3XV97_VERFO2.1e-4984.00Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1[more]
A0A0R0KWV4_SOYBN1.0e-4874.65Uncharacterized protein OS=Glycine max GN=GLYMA_02G154000 PE=4 SV=1[more]
F6HPZ6_VITVI2.3e-4869.74Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01640 PE=4 SV=... [more]
V7BJ21_PHAVU3.0e-4873.43Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G165100g PE=4 SV=1[more]
BLAST of Cp4.1LG12g05460 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47810.11.5e-4385.57 nuclear factor Y, subunit B5[more]
AT5G47640.13.8e-3969.57 nuclear factor Y, subunit B2[more]
AT3G53340.11.9e-3862.50 nuclear factor Y, subunit B10[more]
AT4G14540.13.3e-3873.96 nuclear factor Y, subunit B3[more]
AT2G38880.87.2e-3870.75 nuclear factor Y, subunit B1[more]
BLAST of Cp4.1LG12g05460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101456|ref|XP_008451614.1|5.3e-7590.32PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo][more]
gi|778727953|ref|XP_011659350.1|2.7e-7489.03PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus][more]
gi|837378381|gb|AKM95036.1|3.0e-4984.00nuclear transcription factor Y subunit B-9 [Vernicia fordii][more]
gi|356500286|ref|XP_003518964.1|1.5e-4874.65PREDICTED: nuclear transcription factor Y subunit B-5 [Glycine max][more]
gi|731395039|ref|XP_010652046.1|3.3e-4869.74PREDICTED: nuclear transcription factor Y subunit B-5 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
IPR003956Transcrpt_fac_NFYB/HAP3_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05460.1Cp4.1LG12g05460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 82..98
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 51..115
score: 1.4
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 44..146
score: 2.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 48..149
score: 2.02
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 117..135
score: 1.9E-17coord: 79..97
score: 1.9E-17coord: 98..116
score: 1.9
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 29..146
score: 3.3
NoneNo IPR availablePANTHERPTHR11064:SF42NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5coord: 29..146
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g05460Cucsa.025370Cucumber (Gy14) v1cgycpeB0983
Cp4.1LG12g05460CmaCh17G011110Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g05460CmoCh17G010870Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g05460Cla014682Watermelon (97103) v1cpewmB131
Cp4.1LG12g05460Csa7G395250Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g05460MELO3C016042Melon (DHL92) v3.5.1cpemeB118
Cp4.1LG12g05460ClCG09G006170Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g05460CSPI07G17200Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g05460Lsi02G023730Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g05460MELO3C016042.2Melon (DHL92) v3.6.1cpemedB145
Cp4.1LG12g05460CsaV3_7G028980Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g05460BhiUN245G60Wax gourdcpewgoB0187
Cp4.1LG12g05460CsGy7G015620Cucumber (Gy14) v2cgybcpeB906
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g05460Wax gourdcpewgoB0193
Cp4.1LG12g05460Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g05460Cucurbita pepo (Zucchini)cpecpeB193
Cp4.1LG12g05460Cucumber (Gy14) v1cgycpeB0669
Cp4.1LG12g05460Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g05460Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g05460Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g05460Cucurbita moschata (Rifu)cmocpeB336
Cp4.1LG12g05460Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g05460Wild cucumber (PI 183967)cpecpiB140
Cp4.1LG12g05460Watermelon (97103) v1cpewmB153
Cp4.1LG12g05460Watermelon (97103) v1cpewmB160
Cp4.1LG12g05460Melon (DHL92) v3.5.1cpemeB144
Cp4.1LG12g05460Cucumber (Gy14) v2cgybcpeB309
Cp4.1LG12g05460Melon (DHL92) v3.6.1cpemedB143
Cp4.1LG12g05460Silver-seed gourdcarcpeB0158
Cp4.1LG12g05460Silver-seed gourdcarcpeB1198