MELO3C016042.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016042.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	nuclear transcription factor Y subunit B-1
Location	chr01 : 32765510 .. 32766166 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTTGAAGGGAGCAACGTGTCTATGTTTTAGAGGGTAGAAAAAGCCTTTTTTTTTTCTTTTTTTCTCTTCTTTTTTTTTTTTCCTTTTTTCTCCCTTCCTTTCCTTTTTAGATGGATGAAAACACAGGCATGCCAGAGAGATCCGTAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCCGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAAGCGTCAGATAAGTGCCACAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAAAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAATAATAATAATAATAATAATGGATGAGAGAAATAATTGGAGAAATTTGTCACAAAGGATTTGGAAATGAAAAAAAATTGAACTT

mRNA sequence

GCACTTGAAGGGAGCAACGTGTCTATGTTTTAGAGGGTAGAAAAAGCCTTTTTTTTTTCTTTTTTTCTCTTCTTTTTTTTTTTTCCTTTTTTCTCCCTTCCTTTCCTTTTTAGATGGATGAAAACACAGGCATGCCAGAGAGATCCGTAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCCGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAAGCGTCAGATAAGTGCCACAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAAAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAATAATAATAATAATAATAATGGATGAGAGAAATAATTGGAGAAATTTGTCACAAAGGATTTGGAAATGAAAAAAAATTGAACTT

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGCCAGAGAGATCCGTAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCCGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAAGCGTCAGATAAGTGCCACAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAAAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAATAATAATAATAATAATAATGGATGA

Protein sequence

MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNNG

Homology

[Close]

BLAST of MELO3C016042.2 vs. NCBI nr
Match: XP_008451614.1 (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 4.5e-65
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60
           MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQ 144
           DDYAEPLRRYLVRYRDMEGERAQ
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQ 143

[Close]

BLAST of MELO3C016042.2 vs. NCBI nr
Match: XP_011659350.1 (PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus] >KGN44907.1 hypothetical protein Csa_7G395250 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 5.9e-65
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQ 144
           DDYAEPLRRYLVRYRDMEGERAQ
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQ 143

[Close]

BLAST of MELO3C016042.2 vs. NCBI nr
Match: XP_022953161.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 118/159 (74.21%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGG----------------SSGVGGXXXXXXXXXXXXXXXV 60
           MD+NT MPER VEFKYDFT GG                 SG+GG                
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGXXXXXXXXXXXXXXXXXSGIGG---------------F 60

Query: 61  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 120
           VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK
Sbjct: 61  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 120

Query: 121 TVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQ 144
           TVNGDDICCALATLGFDDYAEPLRRYL+RYR++EGERAQ
Sbjct: 121 TVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQ 144

[Close]

BLAST of MELO3C016042.2 vs. NCBI nr
Match: XP_022991512.1 (nuclear transcription factor Y subunit B-1 [Cucurbita maxima])

HSP 1 Score: 223.0 bits (567), Expect = 7.2e-55
Identity = 122/143 (85.31%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60
           MD+NT MPER VEFKYDFT         XXXXXXXXXX      VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTXXXXXXXXXXXXXXXXXXXSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQ 144
           DDYAEPLRRYL+RYR++EGERAQ
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQ 143

[Close]

BLAST of MELO3C016042.2 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 7.2e-55
Identity = 122/143 (85.31%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60
           MD+NT MPER VEFKYDFT         XXXXXXXXXX      VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTXXXXXXXXXXXXXXXXXXXSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQ 144
           DDYAEPLRRYL+RYR++EGERAQ
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQ 143

[Close]

BLAST of MELO3C016042.2 vs. TAIR10
Match: AT2G47810.1 (nuclear factor Y, subunit B5)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-42
Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 47  EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV 106
           EQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV
Sbjct: 51  EQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV 110

Query: 107 NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           NGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 111 NGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of MELO3C016042.2 vs. TAIR10
Match: AT5G47640.1 (nuclear factor Y, subunit B2)

HSP 1 Score: 157.1 bits (396), Expect = 8.8e-39
Identity = 74/96 (77.08%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 46  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 105
           +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT
Sbjct: 26  REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85

Query: 106 VNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           +NGDD+  A+ TLGF+DY EPL+ YL R+R++EGER
Sbjct: 86  INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of MELO3C016042.2 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 46  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 105
           +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 106 VNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           +NGDD+  A+ TLGF+DY EPL+ YL +YR++EGE+
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of MELO3C016042.2 vs. TAIR10
Match: AT3G53340.1 (nuclear factor Y, subunit B10)

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-37
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISFVT EASDKC +EKRK
Sbjct: 27  VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 141
           T+NGDD+  A+ATLGF+DY +PL+ YL+RYR+MEG+
Sbjct: 87  TINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122

[Close]

BLAST of MELO3C016042.2 vs. TAIR10
Match: AT2G13570.1 (nuclear factor Y, subunit B7)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-36
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 49  DRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNG 108
           DR LPIANVGRIMK++LP N KISK+AKET+QECVSEFISFVTGEASDKC +EKRKT+NG
Sbjct: 38  DRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 97

Query: 109 DDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           DDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 98  DDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]

BLAST of MELO3C016042.2 vs. Swiss-Prot
Match: sp|O82248|NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.9e-41
Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 47  EQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV 106
           EQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV
Sbjct: 51  EQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTV 110

Query: 107 NGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           NGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 111 NGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of MELO3C016042.2 vs. Swiss-Prot
Match: sp|Q9FGJ3|NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-37
Identity = 74/96 (77.08%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 46  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 105
           +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT
Sbjct: 26  REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85

Query: 106 VNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           +NGDD+  A+ TLGF+DY EPL+ YL R+R++EGER
Sbjct: 86  INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of MELO3C016042.2 vs. Swiss-Prot
Match: sp|Q9SLG0|NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-36
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRK
Sbjct: 19  VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRK 78

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 141
           TVNGDD+  A+ATLGF+DY EPL+ YL RYR++EG+
Sbjct: 79  TVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD 114

[Close]

BLAST of MELO3C016042.2 vs. Swiss-Prot
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-36
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 46  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 105
           +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 106 VNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           +NGDD+  A+ TLGF+DY EPL+ YL +YR++EGE+
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of MELO3C016042.2 vs. Swiss-Prot
Match: sp|Q75IZ7|NFYB8_ORYSJ (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-36
Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 46  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 105
           +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT
Sbjct: 23  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 82

Query: 106 VNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           +NGDD+  A+ TLGF+DY +PL+ YL ++R++EGER
Sbjct: 83  INGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGER 118

[Close]

BLAST of MELO3C016042.2 vs. TrEMBL
Match: tr|A0A1S3BT19|A0A1S3BT19_CUCME (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 3.0e-65
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60
           MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQ 144
           DDYAEPLRRYLVRYRDMEGERAQ
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQ 143

[Close]

BLAST of MELO3C016042.2 vs. TrEMBL
Match: tr|A0A0A0K954|A0A0A0K954_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.9e-65
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQ 144
           DDYAEPLRRYLVRYRDMEGERAQ
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQ 143

[Close]

BLAST of MELO3C016042.2 vs. TrEMBL
Match: tr|A0A2P4HYV9|A0A2P4HYV9_QUESU (Nuclear transcription factor y subunit b-5 OS=Quercus suber OX=58331 GN=CFP56_44053 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.3e-47
Identity = 106/143 (74.13%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGGG-SSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGR 60
           M +N G       FKY F G   SSG  G               V+KEQDRLLPIANVGR
Sbjct: 1   MVDNMGNNSEREGFKYHFAGASTSSGEDG---------------VIKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 120

Query: 121 FDDYAEPLRRYLVRYRDMEGERA 143
           FDDYAEPLRRYL RYR++EGERA
Sbjct: 121 FDDYAEPLRRYLQRYRELEGERA 128

[Close]

BLAST of MELO3C016042.2 vs. TrEMBL
Match: tr|A0A2N9ECM2|A0A2N9ECM2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS171 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 105/144 (72.92%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 1   MDENTGMPERSVEFKYDFTGG-GSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGR 60
           M +N G       FKY F G   SSG  G               V+KEQDRLLPIANVGR
Sbjct: 1   MVDNMGNNSEREGFKYHFAGACSSSGEDG---------------VIKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 120

Query: 121 FDDYAEPLRRYLVRYRDMEGERAQ 144
           FDDYAEPL+RYL +YR++EGERAQ
Sbjct: 121 FDDYAEPLKRYLQKYRELEGERAQ 129

[Close]

BLAST of MELO3C016042.2 vs. TrEMBL
Match: tr|M5VPK9|M5VPK9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G256000 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.8e-47
Identity = 113/143 (79.02%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MDENTGMPERSVE-FKYDFTGGGSSGVGGXXXXXXXXXXXXXXXVVKEQDRLLPIANVGR 60
           MD N G      E FKY+FTG   S         XXXXXXXXX V+KEQDRLLPIANVGR
Sbjct: 1   MDNNIGNNSSEREGFKYNFTGSSIS---------XXXXXXXXXGVIKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLG 120

Query: 121 FDDYAEPLRRYLVRYRDMEGERA 143
           FDDYAEPL+RYL RYR++EGE+A
Sbjct: 121 FDDYAEPLKRYLHRYRELEGEKA 134

The following BLAST results are available for this feature:

BLAST of MELO3C016042.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451614.1	4.5e-65	100.00	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
XP_011659350.1	5.9e-65	99.30	PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus] >KGN4490...	[more]
XP_022953161.1	1.9e-55	74.21	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata]	[more]
XP_022991512.1	7.2e-55	85.31	nuclear transcription factor Y subunit B-1 [Cucurbita maxima]	[more]
XP_023549145.1	7.2e-55	85.31	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C016042.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47810.1	3.8e-42	85.26	nuclear factor Y, subunit B5	[more]
AT5G47640.1	8.8e-39	77.08	nuclear factor Y, subunit B2	[more]
AT4G14540.1	1.3e-37	72.92	nuclear factor Y, subunit B3	[more]
AT3G53340.1	4.8e-37	72.92	nuclear factor Y, subunit B10	[more]
AT2G13570.1	1.1e-36	75.27	nuclear factor Y, subunit B7	[more]

BLAST of MELO3C016042.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82248\|NFYB5_ARATH	6.9e-41	85.26	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q9FGJ3\|NFYB2_ARATH	1.6e-37	77.08	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q9SLG0\|NFYB1_ARATH	1.8e-36	72.92	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|O23310\|NFYB3_ARATH	2.3e-36	72.92	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q75IZ7\|NFYB8_ORYSJ	3.9e-36	71.88	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of MELO3C016042.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BT19\|A0A1S3BT19_CUCME	3.0e-65	100.00	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
tr\|A0A0A0K954\|A0A0A0K954_CUCSA	3.9e-65	99.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=4 SV=1	[more]
tr\|A0A2P4HYV9\|A0A2P4HYV9_QUESU	1.3e-47	74.13	Nuclear transcription factor y subunit b-5 OS=Quercus suber OX=58331 GN=CFP56_44...	[more]
tr\|A0A2N9ECM2\|A0A2N9ECM2_FAGSY	1.6e-47	72.92	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS171 PE=4 SV=1	[more]
tr\|M5VPK9\|M5VPK9_PRUPE	4.8e-47	79.02	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G256000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016042.2.1	MELO3C016042.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 79..97 score: 51.32 coord: 98..116 score: 34.21 coord: 117..135 score: 34.09
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR11064:SF88	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 33..158
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 33..158
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 e-value: 1.5E-27 score: 95.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 44..160 e-value: 2.6E-42 score: 145.9
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 48..157
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016042.2	Csa7G395250	Cucumber (Chinese Long) v2	cumedB511
MELO3C016042.2	CSPI07G17200	Wild cucumber (PI 183967)	cpimedB525
MELO3C016042.2	Cucsa.025370	Cucumber (Gy14) v1	cgymedB601
MELO3C016042.2	CmaCh17G011110	Cucurbita maxima (Rimu)	cmamedB373
MELO3C016042.2	CmoCh17G010870	Cucurbita moschata (Rifu)	cmomedB359
MELO3C016042.2	Lsi02G023730	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C016042.2	Cp4.1LG12g05460	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C016042.2	CsGy7G015620	Cucumber (Gy14) v2	cgybmedB467
MELO3C016042.2	Cla014682	Watermelon (97103) v1	medwmB181
MELO3C016042.2	ClCG09G006170	Watermelon (Charleston Gray)	medwcgB155
MELO3C016042.2	Cla97C09G168740	Watermelon (97103) v2	medwmbB194
MELO3C016042.2	BhiUN245G60	Wax gourd	medwgoB205
MELO3C016042.2	CsaV3_7G028980	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016042.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C016042.2	Cucurbita moschata (Rifu)	cmomedB920
MELO3C016042.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C016042.2	Silver-seed gourd	carmedB0112
MELO3C016042.2	Silver-seed gourd	carmedB0859