CmaCh17G011110 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G011110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nuclear transcription factor Y subunit B-5
Location	Cma_Chr17 : 7785153 .. 7785623 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA

mRNA sequence

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA

Coding sequence (CDS)

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA

Protein sequence

MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA

Homology

[Close]

BLAST of CmaCh17G011110 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-42
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRK
Sbjct: 49  VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           TVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of CmaCh17G011110 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 5.2e-38
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

[Close]

BLAST of CmaCh17G011110 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-38
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1


Query: 27  GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++   S +    +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSSLSP--REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           ISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REIEGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of CmaCh17G011110 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 8.9e-38
Identity = 79/123 (64.23%), Postives = 96/123 (78.05%), Query Frame = 1


Query: 21  GGGGGV---GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKE 80
           GGGGG    G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKE
Sbjct: 9   GGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKE 68

Query: 81  TMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREI 140
           T+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YRE+
Sbjct: 69  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREM 128

[Close]

BLAST of CmaCh17G011110 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.4e-37
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 1


Query: 24  GGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECV 83
           GG GGS    S   G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECV
Sbjct: 9   GGGGGSHESGSPRGGGG-GGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECV 68

Query: 84  SEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGE 141
           SEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YRE+EG+
Sbjct: 69  SEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]

BLAST of CmaCh17G011110 vs. TrEMBL
Match: A0A0A0K954_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.4e-74
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER +EFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNN+
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNS 152

[Close]

BLAST of CmaCh17G011110 vs. TrEMBL
Match: A0A0H3XV97_VERFO (Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.1e-49
Identity = 105/125 (84.00%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 31  GGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   GSG  G +KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YRE EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKGSNN 138

Query: 151 NNAHD 156
               D
Sbjct: 139 EERED 142

[Close]

BLAST of CmaCh17G011110 vs. TrEMBL
Match: F6HPZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01640 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 106/152 (69.74%), Postives = 117/152 (76.97%), Query Frame = 1


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           +DD     +R  + KY++            GGSS  A  GI   +KEQDRLLPIANVGRI
Sbjct: 2   VDDIGTNADRDYDHKYNYA-----------GGSSVSAEDGI---IKEQDRLLPIANVGRI 61

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC AL TLGF
Sbjct: 62  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGTLGF 121

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPL+RYL RYRE+EGE+A Q+K    N+
Sbjct: 122 DDYAEPLKRYLHRYRELEGEKANQSKASEEND 139

[Close]

BLAST of CmaCh17G011110 vs. TrEMBL
Match: A0A151TWS5_CAJCA (Nuclear transcription factor Y subunit B-5 OS=Cajanus cajan GN=KK1_010745 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-48
Identity = 107/155 (69.03%), Postives = 119/155 (76.77%), Query Frame = 1


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           M DN         FKY+FT         ST  +S+   S   G +KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKGSHREGFKYNFTA--------STTAASDTC-SLQDGVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICYALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHD 156
           DDY +PL+RYL +YRE+EGE+A QNK    NN+++
Sbjct: 121 DDYTDPLKRYLHKYRELEGEKANQNKA---NNSYE 143

[Close]

BLAST of CmaCh17G011110 vs. TrEMBL
Match: A0A0L9TWP1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g107600 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.9e-48
Identity = 103/133 (77.44%), Postives = 110/133 (82.71%), Query Frame = 1


Query: 14  FKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISK 73
           FKY+FT         ST  ++    S   G +KEQDRLLPIANVGRIMKQ LPPNAKISK
Sbjct: 16  FKYNFTC--------STSTATASDTSAQDGVIKEQDRLLPIANVGRIMKQTLPPNAKISK 75

Query: 74  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIR 133
           EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL +
Sbjct: 76  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHK 135

Query: 134 YREIEGERAQQNK 147
           YRE+EGERA QNK
Sbjct: 136 YRELEGERATQNK 140

[Close]

BLAST of CmaCh17G011110 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRK
Sbjct: 49  VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           TVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of CmaCh17G011110 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 158.3 bits (399), Expect = 3.8e-39
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1


Query: 27  GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++   S +    +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSSLSP--REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           ISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REIEGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of CmaCh17G011110 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 80/128 (62.50%), Postives = 96/128 (75.00%), Query Frame = 1


Query: 20  TGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           TGGGGG    +GG            V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETM
Sbjct: 6   TGGGGGGSHESGGDQSPRSLN----VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETM 65

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEG 139
           QECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYRE+EG
Sbjct: 66  QECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEG 125

Query: 140 ERAQQNKG 148
           +     KG
Sbjct: 126 DTKGSGKG 129

[Close]

BLAST of CmaCh17G011110 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-38
Identity = 71/96 (73.96%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 46  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 105
           +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+TGEASDKC +EKRKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 106 VNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           +NGDD+  A+ TLGF+DY EPL+ YL +YRE+EGE+
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of CmaCh17G011110 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 154.1 bits (388), Expect = 7.2e-38
Identity = 75/106 (70.75%), Postives = 87/106 (82.08%), Query Frame = 1


Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREI 138
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: gi|659101456|ref|XP_008451614.1| (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 7.0e-75
Identity = 140/152 (92.11%), Postives = 146/152 (96.05%), Query Frame = 1


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER VEFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNNN
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN 152

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: gi|778727953|ref|XP_011659350.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 3.5e-74
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER +EFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNN+
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNS 152

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: gi|837378381|gb|AKM95036.1| (nuclear transcription factor Y subunit B-9 [Vernicia fordii])

HSP 1 Score: 203.4 bits (516), Expect = 3.0e-49
Identity = 105/125 (84.00%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 31  GGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   GSG  G +KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YRE EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKGSNN 138

Query: 151 NNAHD 156
               D
Sbjct: 139 EERED 142

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: gi|731395039|ref|XP_010652046.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Vitis vinifera])

HSP 1 Score: 199.9 bits (507), Expect = 3.3e-48
Identity = 106/152 (69.74%), Postives = 117/152 (76.97%), Query Frame = 1


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           +DD     +R  + KY++            GGSS  A  GI   +KEQDRLLPIANVGRI
Sbjct: 2   VDDIGTNADRDYDHKYNYA-----------GGSSVSAEDGI---IKEQDRLLPIANVGRI 61

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC AL TLGF
Sbjct: 62  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGTLGF 121

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPL+RYL RYRE+EGE+A Q+K    N+
Sbjct: 122 DDYAEPLKRYLHRYRELEGEKANQSKASEEND 139

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: gi|1012360302|gb|KYP71486.1| (Nuclear transcription factor Y subunit B-5 [Cajanus cajan])

HSP 1 Score: 199.5 bits (506), Expect = 4.3e-48
Identity = 107/155 (69.03%), Postives = 119/155 (76.77%), Query Frame = 1


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           M DN         FKY+FT         ST  +S+   S   G +KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKGSHREGFKYNFTA--------STTAASDTC-SLQDGVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICYALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHD 156
           DDY +PL+RYL +YRE+EGE+A QNK    NN+++
Sbjct: 121 DDYTDPLKRYLHKYRELEGEKANQNKA---NNSYE 143

The following BLAST results are available for this feature:

BLAST of CmaCh17G011110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB5_ARATH	2.7e-42	85.57	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2...	[more]
NFYB1_ARATH	5.2e-38	65.29	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]
NFYB2_ARATH	6.8e-38	69.57	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB3_ORYSJ	8.9e-38	64.23	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB_MAIZE	3.4e-37	65.81	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]

BLAST of CmaCh17G011110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K954_CUCSA	2.4e-74	90.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1	[more]
A0A0H3XV97_VERFO	2.1e-49	84.00	Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1	[more]
F6HPZ6_VITVI	2.3e-48	69.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01640 PE=4 SV=...	[more]
A0A151TWS5_CAJCA	3.0e-48	69.03	Nuclear transcription factor Y subunit B-5 OS=Cajanus cajan GN=KK1_010745 PE=4 S...	[more]
A0A0L9TWP1_PHAAN	3.9e-48	77.44	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g107600 PE=4 SV=1	[more]

BLAST of CmaCh17G011110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47810.1	1.5e-43	85.57	nuclear factor Y, subunit B5	[more]
AT5G47640.1	3.8e-39	69.57	nuclear factor Y, subunit B2	[more]
AT3G53340.1	1.9e-38	62.50	nuclear factor Y, subunit B10	[more]
AT4G14540.1	3.3e-38	73.96	nuclear factor Y, subunit B3	[more]
AT2G38880.8	7.2e-38	70.75	nuclear factor Y, subunit B1	[more]

BLAST of CmaCh17G011110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101456\|ref\|XP_008451614.1\|	7.0e-75	92.11	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
gi\|778727953\|ref\|XP_011659350.1\|	3.5e-74	90.79	PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
gi\|837378381\|gb\|AKM95036.1\|	3.0e-49	84.00	nuclear transcription factor Y subunit B-9 [Vernicia fordii]	[more]
gi\|731395039\|ref\|XP_010652046.1\|	3.3e-48	69.74	PREDICTED: nuclear transcription factor Y subunit B-5 [Vitis vinifera]	[more]
gi\|1012360302\|gb\|KYP71486.1\|	4.3e-48	69.03	Nuclear transcription factor Y subunit B-5 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G011110.1	CmaCh17G011110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 score: 1.4
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 44..146 score: 2.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 48..148 score: 2.17
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 1.9E-17coord: 79..97 score: 1.9E-17coord: 98..116 score: 1.9
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 29..146 score: 3.3
None	No IPR available	PANTHER	PTHR11064:SF42	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 29..146 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G011110	Cucsa.025370	Cucumber (Gy14) v1	cgycmaB1030
CmaCh17G011110	Cla014682	Watermelon (97103) v1	cmawmB328
CmaCh17G011110	Csa7G395250	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G011110	MELO3C016042	Melon (DHL92) v3.5.1	cmameB320
CmaCh17G011110	ClCG09G006170	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G011110	CSPI07G17200	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G011110	CmoCh17G010870	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G011110	Lsi02G023730	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G011110	Cp4.1LG12g05460	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G011110	MELO3C016042.2	Melon (DHL92) v3.6.1	cmamedB373
CmaCh17G011110	CsaV3_7G028980	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G011110	Cla97C09G168740	Watermelon (97103) v2	cmawmbB386
CmaCh17G011110	BhiUN245G60	Wax gourd	cmawgoB0472
CmaCh17G011110	CsGy7G015620	Cucumber (Gy14) v2	cgybcmaB925

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G011110	Melon (DHL92) v3.6.1	cmamedB371
CmaCh17G011110	Melon (DHL92) v3.6.1	cmamedB400
CmaCh17G011110	Silver-seed gourd	carcmaB0142
CmaCh17G011110	Silver-seed gourd	carcmaB1191
CmaCh17G011110	Cucumber (Chinese Long) v3	cmacucB0433
CmaCh17G011110	Watermelon (97103) v2	cmawmbB368
CmaCh17G011110	Watermelon (97103) v2	cmawmbB374
CmaCh17G011110	Wax gourd	cmawgoB0478
CmaCh17G011110	Cucurbita maxima (Rimu)	cmacmaB250
CmaCh17G011110	Cucurbita maxima (Rimu)	cmacmaB371
CmaCh17G011110	Cucurbita maxima (Rimu)	cmacmaB382
CmaCh17G011110	Cucurbita maxima (Rimu)	cmacmaB391
CmaCh17G011110	Cucumber (Gy14) v1	cgycmaB0713
CmaCh17G011110	Cucurbita moschata (Rifu)	cmacmoB351
CmaCh17G011110	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G011110	Cucurbita moschata (Rifu)	cmacmoB383
CmaCh17G011110	Wild cucumber (PI 183967)	cmacpiB367
CmaCh17G011110	Cucumber (Chinese Long) v2	cmacuB363
CmaCh17G011110	Watermelon (Charleston Gray)	cmawcgB327
CmaCh17G011110	Watermelon (97103) v1	cmawmB345
CmaCh17G011110	Watermelon (97103) v1	cmawmB357
CmaCh17G011110	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G011110	Cucurbita pepo (Zucchini)	cmacpeB410
CmaCh17G011110	Bottle gourd (USVL1VR-Ls)	cmalsiB339
CmaCh17G011110	Cucumber (Gy14) v2	cgybcmaB351