MELO3C016042 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016042
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Nuclear transcription factor Y subunit B-5
Location	chr1 : 31459621 .. 31460277 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTTGAAGGGAGCAACGTGTCTATGTTTTAGAGGGTAGAAAAAGCCTTTTTTTTTTCTTTTTTTCTCTTCTTTTTTTTTTTTCCTTTTTTCTCCCTTCCTTTCCTTTTTAGATGGATGAAAACACAGGCATGCCAGAGAGATCCGTAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCCGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAAGCGTCAGATAAGTGCCACAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAAAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAATAATAATAATAATAATAATGGATGAGAGAAATAATTGGAGAAATTTGTCACAAAGGATTTGGAAATGAAAAAAAATTGAACTT

mRNA sequence

GCACTTGAAGGGAGCAACGTGTCTATGTTTTAGAGGGTAGAAAAAGCCTTTTTTTTTTCTTTTTTTCTCTTCTTTTTTTTTTTTCCTTTTTTCTCCCTTCCTTTCCTTTTTAGATGGATGAAAACACAGGCATGCCAGAGAGATCCGTAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCCGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAAGCGTCAGATAAGTGCCACAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAAAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAATAATAATAATAATAATAATGGATGAGAGAAATAATTGGAGAAATTTGTCACAAAGGATTTGGAAATGAAAAAAAATTGAACTT

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGCCAGAGAGATCCGTAGAATTTAAGTACGATTTCACCGGCGGTGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCCGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAAGCGTCAGATAAGTGCCACAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAAAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAATAATAATAATAATAATAATGGATGA

Protein sequence

MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNNG*

Homology

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BLAST of MELO3C016042 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.1e-42
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of MELO3C016042 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-40
Identity = 78/121 (64.46%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 20  GGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           GGGS   G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+
Sbjct: 11  GGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 70

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEG 139
           QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG
Sbjct: 71  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 130

Query: 140 E 141
           +
Sbjct: 131 D 131

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BLAST of MELO3C016042 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.6e-40
Identity = 88/155 (56.77%), Postives = 101/155 (65.16%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 A---------QQNKGCCNNNNNN-------NNNNN 161
                     QQ +     N++N        NNNN
Sbjct: 131 VNSPKQQQQRQQQQQIQQQNHHNYQFQEQDQNNNN 165

[Close]

BLAST of MELO3C016042 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.2e-39
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++EG+    NKG   +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 NNNNNNNNNG 162
            + +N +  G
Sbjct: 126 GDGSNRDAGG 131

[Close]

BLAST of MELO3C016042 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.8e-39
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 1


Query: 23  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 82
           S G GG +  S    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QEC
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 66

Query: 83  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 141
           VSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG+
Sbjct: 67  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

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BLAST of MELO3C016042 vs. TrEMBL
Match: A0A0A0K954_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.7e-86
Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 160
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+NNNNNN+
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNND 159

[Close]

BLAST of MELO3C016042 vs. TrEMBL
Match: A0A0R0KWV4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G154000 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.1e-51
Identity = 112/159 (70.44%), Postives = 118/159 (74.21%), Query Frame = 1


Query: 2   DENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIM 61
           D N G       FKY+FT   S      T    E        V+KEQDRLLPIANVGRIM
Sbjct: 3   DNNIGKVLEREGFKYNFTAAASD-----TSAQDE--------VIKEQDRLLPIANVGRIM 62

Query: 62  KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFD 121
           KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFD
Sbjct: 63  KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 122

Query: 122 DYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNN 161
           DY+EPL+RYL +YR+ EGERA QNKG  NNN   NN  N
Sbjct: 123 DYSEPLKRYLHKYREFEGERANQNKG--NNNTYENNIAN 146

[Close]

BLAST of MELO3C016042 vs. TrEMBL
Match: A0A067K777_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13881 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.6e-51
Identity = 105/131 (80.15%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S  +G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGAS--SGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL RYR+ EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYREQEGERA-SNKGSNN 138

Query: 151 NNNNNNNNNNG 162
             N++++N  G
Sbjct: 139 EENDDSSNCRG 146

[Close]

BLAST of MELO3C016042 vs. TrEMBL
Match: I1L7X0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-50
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

[Close]

BLAST of MELO3C016042 vs. TrEMBL
Match: A0A0B2P810_GLYSO (Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-50
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

[Close]

BLAST of MELO3C016042 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 171.4 bits (433), Expect = 4.6e-43
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of MELO3C016042 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 164.9 bits (416), Expect = 4.3e-41
Identity = 88/155 (56.77%), Postives = 101/155 (65.16%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 A---------QQNKGCCNNNNNN-------NNNNN 161
                     QQ +     N++N        NNNN
Sbjct: 131 VNSPKQQQQRQQQQQIQQQNHHNYQFQEQDQNNNN 165

[Close]

BLAST of MELO3C016042 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 161.0 bits (406), Expect = 6.2e-40
Identity = 81/129 (62.79%), Postives = 95/129 (73.64%), Query Frame = 1


Query: 19  TGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKET 78
           TGGG  G   S G  S  + N     V+EQDR LPIAN+ RIMK+ LP N KI+K+AKET
Sbjct: 6   TGGGGGGSHESGGDQSPRSLN-----VREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 65

Query: 79  MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDME 138
           MQECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYR+ME
Sbjct: 66  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 125

Query: 139 GERAQQNKG 148
           G+     KG
Sbjct: 126 GDTKGSGKG 129

[Close]

BLAST of MELO3C016042 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-39
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 20  GGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           G      GG   G+++   + +    +EQDR LPIANV RIMK+ LP NAKISK+AKETM
Sbjct: 2   GDSDRDSGGGQNGNNQNGQSSLSP--REQDRFLPIANVSRIMKKALPANAKISKDAKETM 61

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEG 139
           QECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+R++EG
Sbjct: 62  QECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEG 121

Query: 140 ER 142
           ER
Sbjct: 122 ER 121

[Close]

BLAST of MELO3C016042 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-38
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 32  GSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 91
           G  ++ GN      +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+T
Sbjct: 9   GGHKDGGNAS---TREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFIT 68

Query: 92  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           GEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YR++EGE+
Sbjct: 69  GEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of MELO3C016042 vs. NCBI nr
Match: gi|659101456|ref|XP_008451614.1| (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 5.2e-89
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNNG 162
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNNG
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNNG 161

[Close]

BLAST of MELO3C016042 vs. NCBI nr
Match: gi|778727953|ref|XP_011659350.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 2.4e-86
Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 160
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+NNNNNN+
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNND 159

[Close]

BLAST of MELO3C016042 vs. NCBI nr
Match: gi|356500286|ref|XP_003518964.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Glycine max])

HSP 1 Score: 208.8 bits (530), Expect = 7.3e-51
Identity = 112/159 (70.44%), Postives = 118/159 (74.21%), Query Frame = 1


Query: 2   DENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIM 61
           D N G       FKY+FT   S      T    E        V+KEQDRLLPIANVGRIM
Sbjct: 3   DNNIGKVLEREGFKYNFTAAASD-----TSAQDE--------VIKEQDRLLPIANVGRIM 62

Query: 62  KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFD 121
           KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFD
Sbjct: 63  KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 122

Query: 122 DYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNNN 161
           DY+EPL+RYL +YR+ EGERA QNKG  NNN   NN  N
Sbjct: 123 DYSEPLKRYLHKYREFEGERANQNKG--NNNTYENNIAN 146

[Close]

BLAST of MELO3C016042 vs. NCBI nr
Match: gi|802688624|ref|XP_012082708.1| (PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas])

HSP 1 Score: 208.4 bits (529), Expect = 9.5e-51
Identity = 105/131 (80.15%), Postives = 116/131 (88.55%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S  +G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGAS--SGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL RYR+ EGERA  NKG  N
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYREQEGERA-SNKGSNN 138

Query: 151 NNNNNNNNNNG 162
             N++++N  G
Sbjct: 139 EENDDSSNCRG 146

[Close]

BLAST of MELO3C016042 vs. NCBI nr
Match: gi|356536735|ref|XP_003536891.1| (PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max])

HSP 1 Score: 206.8 bits (525), Expect = 2.8e-50
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

The following BLAST results are available for this feature:

BLAST of MELO3C016042 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB5_ARATH	8.1e-42	84.69	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2...	[more]
NFYB3_ORYSJ	2.0e-40	64.46	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB7_ARATH	7.6e-40	56.77	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB1_ARATH	2.2e-39	62.31	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]
NFYB_MAIZE	3.8e-39	64.41	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]

BLAST of MELO3C016042 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K954_CUCSA	1.7e-86	98.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1	[more]
A0A0R0KWV4_SOYBN	5.1e-51	70.44	Uncharacterized protein OS=Glycine max GN=GLYMA_02G154000 PE=4 SV=1	[more]
A0A067K777_JATCU	6.6e-51	80.15	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13881 PE=4 SV=1	[more]
I1L7X0_SOYBN	1.9e-50	70.06	Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1	[more]
A0A0B2P810_GLYSO	1.9e-50	70.06	Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=...	[more]

BLAST of MELO3C016042 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47810.1	4.6e-43	84.69	nuclear factor Y, subunit B5	[more]
AT2G13570.1	4.3e-41	56.77	nuclear factor Y, subunit B7	[more]
AT3G53340.1	6.2e-40	62.79	nuclear factor Y, subunit B10	[more]
AT5G47640.1	2.3e-39	63.93	nuclear factor Y, subunit B2	[more]
AT4G14540.1	7.5e-38	66.36	nuclear factor Y, subunit B3	[more]

BLAST of MELO3C016042 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101456\|ref\|XP_008451614.1\|	5.2e-89	100.00	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
gi\|778727953\|ref\|XP_011659350.1\|	2.4e-86	98.11	PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
gi\|356500286\|ref\|XP_003518964.1\|	7.3e-51	70.44	PREDICTED: nuclear transcription factor Y subunit B-5 [Glycine max]	[more]
gi\|802688624\|ref\|XP_012082708.1\|	9.5e-51	80.15	PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]	[more]
gi\|356536735\|ref\|XP_003536891.1\|	2.8e-50	70.06	PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016042T1	MELO3C016042T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 score: 1.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 44..155 score: 8.5
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 48..157 score: 1.16
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 79..97 score: 1.1E-17coord: 98..116 score: 1.1E-17coord: 117..135 score: 1.1
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 29..161 score: 2.6
None	No IPR available	PANTHER	PTHR11064:SF42	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 29..161 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016042	Csa7G395250	Cucumber (Chinese Long) v2	cumeB532
MELO3C016042	Cla014682	Watermelon (97103) v1	mewmB184
MELO3C016042	ClCG09G006170	Watermelon (Charleston Gray)	mewcgB162
MELO3C016042	Cla97C09G168740	Watermelon (97103) v2	mewmbB209
MELO3C016042	BhiUN245G60	Wax gourd	mewgoB204
MELO3C016042	CSPI07G17200	Wild cucumber (PI 183967)	cpimeB540
MELO3C016042	Cucsa.025370	Cucumber (Gy14) v1	cgymeB604
MELO3C016042	CmaCh17G011110	Cucurbita maxima (Rimu)	cmameB320
MELO3C016042	CmoCh17G010870	Cucurbita moschata (Rifu)	cmomeB313
MELO3C016042	Lsi02G023730	Bottle gourd (USVL1VR-Ls)	lsimeB192
MELO3C016042	Cp4.1LG12g05460	Cucurbita pepo (Zucchini)	cpemeB118
MELO3C016042	CsGy7G015620	Cucumber (Gy14) v2	cgybmeB470
MELO3C016042	CsaV3_7G028980	Cucumber (Chinese Long) v3	cucmeB550

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016042	Cucurbita maxima (Rimu)	cmameB831
MELO3C016042	Cucurbita moschata (Rifu)	cmomeB815
MELO3C016042	Cucurbita pepo (Zucchini)	cpemeB293
MELO3C016042	Silver-seed gourd	carmeB0110
MELO3C016042	Silver-seed gourd	carmeB0848