CSPI07G17200 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G17200
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Nuclear transcription factor Y subunit B
Location	Chr7 : 15655011 .. 15655915 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGAGCAACGTGTCTATGTTTTAGAGGATAAAAAAAGCCTCTTTTTTTCTCTTTTTTTTTCCTCCCTTTCCCTTTCCTTTTTAGATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGAGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATAGTAATAATAATAATAACAACGATGGATGAGAGAAATAATTGGAGAAATTTGCCTCAAACGATTTGGAAAGAAAAAAAAATTGAACTTTTCCTCTTTTTTTTCTTTTCTTCAATTGGGTATTTCTTTTTCTTTTTTTGAAGTTTGTTAAACAGGATAGGCTCAAATGGGGAAATGGGGGAAATGGAGAAATGTGATTTGGAGAAGAGGTTTTATTATTATTATTATTTTTTGTAATTTGATTTTCTGACTTCTAAAAAAACACTTTTAATTTGTGGGTTTTGTTTGGTTTTGTTTTTTGTTTGTATGTTTGTACTTTGTTTTGTTCTTTAGATATGAGGGTTTTTGTTGAATTAACATGTTGGGGG

mRNA sequence

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGAGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATAGTAATAATAATAATAACAACGATGGATGA

Coding sequence (CDS)

ATGGATGAAAACACAGGCATGCCAGAGAGATCCATAGAATTTAAGTACGATTTCACCGGCGGAGGCAGTAGCGGAGTTGGTGGTAGCACAGGTGGTTCGAGTGAGGAAGCTGGCAACGGCGTTGGCGGGGTGGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATAATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCAAAAGAAGCTAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTCGTGACGGGGGAGGCGTCAGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATAGTAATAATAATAATAACAACGATGGATGA

Homology

[Close]

BLAST of CSPI07G17200 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-41
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQN-KGCCNNSNNN 156
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   +S +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of CSPI07G17200 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-38
Identity = 78/121 (64.46%), Postives = 95/121 (78.51%), Query Frame = 1


Query: 20  GGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 79
           GGGS   G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+
Sbjct: 11  GGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 70

Query: 80  QECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEG 139
           QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG
Sbjct: 71  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 130

Query: 140 E 141
           +
Sbjct: 131 D 131

[Close]

BLAST of CSPI07G17200 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 76/118 (64.41%), Postives = 94/118 (79.66%), Query Frame = 1


Query: 23  SSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 82
           S G GG +  S    G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QEC
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQEC 66

Query: 83  VSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGE 141
           VSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR+MEG+
Sbjct: 67  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]

BLAST of CSPI07G17200 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-37
Identity = 81/125 (64.80%), Postives = 93/125 (74.40%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 AQQNK 147
               K
Sbjct: 131 VNSPK 135

[Close]

BLAST of CSPI07G17200 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-36
Identity = 81/129 (62.79%), Postives = 100/129 (77.52%), Query Frame = 1


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++EG+    NKG   +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 SNNNNNNDG 161
            + +N + G
Sbjct: 126 GDGSNRDAG 130

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BLAST of CSPI07G17200 vs. TrEMBL
Match: A0A0A0K954_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 4.5e-84
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 161
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 160

[Close]

BLAST of CSPI07G17200 vs. TrEMBL
Match: I1L7X0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.2e-48
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

[Close]

BLAST of CSPI07G17200 vs. TrEMBL
Match: A0A0B2P810_GLYSO (Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.2e-48
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

[Close]

BLAST of CSPI07G17200 vs. TrEMBL
Match: A0A0H3XV97_VERFO (Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-48
Identity = 105/129 (81.40%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YR+ EGERA  NKG   
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKG--- 138

Query: 151 NSNNNNNND 160
            SNN    D
Sbjct: 139 -SNNEERED 142

[Close]

BLAST of CSPI07G17200 vs. TrEMBL
Match: A0A0R0KWV4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G154000 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-48
Identity = 110/157 (70.06%), Postives = 116/157 (73.89%), Query Frame = 1


Query: 2   DENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIM 61
           D N G       FKY+FT   S      T    E        V+KEQDRLLPIANVGRIM
Sbjct: 3   DNNIGKVLEREGFKYNFTAAASD-----TSAQDE--------VIKEQDRLLPIANVGRIM 62

Query: 62  KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFD 121
           KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFD
Sbjct: 63  KQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFD 122

Query: 122 DYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNN 159
           DY+EPL+RYL +YR+ EGERA QNKG  N   NN  N
Sbjct: 123 DYSEPLKRYLHKYREFEGERANQNKGNNNTYENNIAN 146

[Close]

BLAST of CSPI07G17200 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-42
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 1


Query: 44  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQN-KGCCNNSNNN 156
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   +S +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of CSPI07G17200 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 157.1 bits (396), Expect = 8.8e-39
Identity = 81/125 (64.80%), Postives = 93/125 (74.40%), Query Frame = 1


Query: 22  GSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GS GV  +  GS     N      KEQDR LPIANVGRIMK++LP N KISK+AKET+QE
Sbjct: 11  GSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQE 70

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +YRD EGE+
Sbjct: 71  CVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

Query: 142 AQQNK 147
               K
Sbjct: 131 VNSPK 135

[Close]

BLAST of CSPI07G17200 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 154.5 bits (389), Expect = 5.7e-38
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 1


Query: 19  TGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKET 78
           TGGG  G   S G  S  + N     V+EQDR LPIAN+ RIMK+ LP N KI+K+AKET
Sbjct: 6   TGGGGGGSHESGGDQSPRSLN-----VREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 65

Query: 79  MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDME 138
           MQECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYR+ME
Sbjct: 66  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 125

Query: 139 GERAQQNKG 148
           G+     KG
Sbjct: 126 GDTKGSGKG 129

[Close]

BLAST of CSPI07G17200 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-37
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 1


Query: 32  GSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 91
           G  ++ GN      +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF+T
Sbjct: 9   GGHKDGGNAS---TREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFIT 68

Query: 92  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGER 142
           GEASDKC +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YR++EGE+
Sbjct: 69  GEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of CSPI07G17200 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 152.5 bits (384), Expect = 2.2e-37
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 34  SEEAGNG--VGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG+G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDM 138
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR++
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111

[Close]

BLAST of CSPI07G17200 vs. NCBI nr
Match: gi|778727953|ref|XP_011659350.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 6.5e-84
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 161
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNNDG 160

[Close]

BLAST of CSPI07G17200 vs. NCBI nr
Match: gi|659101456|ref|XP_008451614.1| (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-82
Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           MDENTGMPERS+EFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNND 160
           DDYAEPLRRYLVRYRDMEGERAQQNKGCCNN+NNNNNN+
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNNN 159

[Close]

BLAST of CSPI07G17200 vs. NCBI nr
Match: gi|951018285|ref|XP_014511739.1| (PREDICTED: nuclear transcription factor Y subunit B-5 [Vigna radiata var. radiata])

HSP 1 Score: 199.5 bits (506), Expect = 4.4e-48
Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = 1


Query: 14  FKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISK 73
           FKY+FT   S+    ++  S+++      GV+KEQDRLLPIANVGRIMKQ LPPNAKISK
Sbjct: 16  FKYNFTSSTSTATATASDTSAQD------GVIKEQDRLLPIANVGRIMKQTLPPNAKISK 75

Query: 74  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVR 133
           EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPL+RYL +
Sbjct: 76  EAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHK 135

Query: 134 YRDMEGERAQQNK 147
           YR++EGERA QNK
Sbjct: 136 YRELEGERATQNK 142

[Close]

BLAST of CSPI07G17200 vs. NCBI nr
Match: gi|356536735|ref|XP_003536891.1| (PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max])

HSP 1 Score: 198.7 bits (504), Expect = 7.5e-48
Identity = 110/157 (70.06%), Postives = 120/157 (76.43%), Query Frame = 1


Query: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60
           M +N G       FKY+FT   S       G S+++      GV+KEQDRLLPIANVGRI
Sbjct: 1   MGDNIGKVLDREGFKYNFTASAS-------GTSAQD------GVIKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQE VSEFISFVTGEASDKCHKEKRKTVNGDDIC ALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGF 120

Query: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 158
           DDY+EPL+RYL +YR+MEGERA QNKG     NN  N
Sbjct: 121 DDYSEPLKRYLYKYREMEGERANQNKGSNGYENNIAN 144

[Close]

BLAST of CSPI07G17200 vs. NCBI nr
Match: gi|837378381|gb|AKM95036.1| (nuclear transcription factor Y subunit B-9 [Vernicia fordii])

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 105/129 (81.40%), Postives = 111/129 (86.05%), Query Frame = 1


Query: 31  GGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 90
           GG+S   G+G  G++KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV
Sbjct: 19  GGASSGGGSGEDGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFV 78

Query: 91  TGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCN 150
           TGEASDKCHKEKRKTVNGDDIC ALATLGFDDYAEPLRRYL +YR+ EGERA  NKG   
Sbjct: 79  TGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLRRYLYKYREQEGERA-TNKG--- 138

Query: 151 NSNNNNNND 160
            SNN    D
Sbjct: 139 -SNNEERED 142

The following BLAST results are available for this feature:

BLAST of CSPI07G17200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB5_ARATH	2.3e-41	76.99	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2...	[more]
NFYB3_ORYSJ	3.2e-38	64.46	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB_MAIZE	1.2e-37	64.41	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB7_ARATH	1.6e-37	64.80	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB1_ARATH	1.0e-36	62.79	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]

BLAST of CSPI07G17200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K954_CUCSA	4.5e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G395250 PE=4 SV=1	[more]
I1L7X0_SOYBN	5.2e-48	70.06	Uncharacterized protein OS=Glycine max GN=GLYMA_10G020100 PE=4 SV=1	[more]
A0A0B2P810_GLYSO	5.2e-48	70.06	Nuclear transcription factor Y subunit B-5 OS=Glycine soja GN=glysoja_010966 PE=...	[more]
A0A0H3XV97_VERFO	8.9e-48	81.40	Nuclear transcription factor Y subunit B-9 OS=Vernicia fordii PE=2 SV=1	[more]
A0A0R0KWV4_SOYBN	8.9e-48	70.06	Uncharacterized protein OS=Glycine max GN=GLYMA_02G154000 PE=4 SV=1	[more]

BLAST of CSPI07G17200 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47810.1	1.3e-42	76.99	nuclear factor Y, subunit B5	[more]
AT2G13570.1	8.8e-39	64.80	nuclear factor Y, subunit B7	[more]
AT3G53340.1	5.7e-38	62.79	nuclear factor Y, subunit B10	[more]
AT4G14540.1	1.7e-37	66.36	nuclear factor Y, subunit B3	[more]
AT2G38880.8	2.2e-37	69.81	nuclear factor Y, subunit B1	[more]

BLAST of CSPI07G17200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727953\|ref\|XP_011659350.1\|	6.5e-84	100.00	PREDICTED: nuclear transcription factor Y subunit B-5 [Cucumis sativus]	[more]
gi\|659101456\|ref\|XP_008451614.1\|	2.7e-82	98.11	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]
gi\|951018285\|ref\|XP_014511739.1\|	4.4e-48	76.69	PREDICTED: nuclear transcription factor Y subunit B-5 [Vigna radiata var. radiat...	[more]
gi\|356536735\|ref\|XP_003536891.1\|	7.5e-48	70.06	PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max]	[more]
gi\|837378381\|gb\|AKM95036.1\|	1.3e-47	81.40	nuclear transcription factor Y subunit B-9 [Vernicia fordii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G17200.1	CSPI07G17200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 score: 1.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 44..150 score: 1.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 48..153 score: 2.02
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 1.1E-17coord: 79..97 score: 1.1E-17coord: 98..116 score: 1.1
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 29..160 score: 8.1
None	No IPR available	PANTHER	PTHR11064:SF42	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 29..160 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G17200	Cla014682	Watermelon (97103) v1	cpiwmB587
CSPI07G17200	Csa7G395250	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G17200	MELO3C016042	Melon (DHL92) v3.5.1	cpimeB540
CSPI07G17200	ClCG09G006170	Watermelon (Charleston Gray)	cpiwcgB555
CSPI07G17200	Lsi02G023730	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G17200	MELO3C016042.2	Melon (DHL92) v3.6.1	cpimedB525
CSPI07G17200	CsaV3_7G028980	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G17200	Cla97C09G168740	Watermelon (97103) v2	cpiwmbB598
CSPI07G17200	BhiUN245G60	Wax gourd	cpiwgoB662
CSPI07G17200	Cucsa.025370	Cucumber (Gy14) v1	cgycpiB548
CSPI07G17200	CmaCh17G011110	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G17200	CmoCh17G010870	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G17200	Cp4.1LG12g05460	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G17200	CsGy7G015620	Cucumber (Gy14) v2	cgybcpiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G17200	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G17200	Cucurbita pepo (Zucchini)	cpecpiB344
CSPI07G17200	Silver-seed gourd	carcpiB0124
CSPI07G17200	Silver-seed gourd	carcpiB0896
CSPI07G17200	Watermelon (97103) v2	cpiwmbB564
CSPI07G17200	Wax gourd	cpiwgoB666
CSPI07G17200	Cucurbita maxima (Rimu)	cmacpiB934