CsaV3_5G020690 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G020690
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	E3 ubiquitin-protein ligase RING1-like
Location	chr5 : 15741995 .. 15746829 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAATCTAGAATGTTCTAAATTCGTCGAGAAAGTTCAAGAGCCAATTAAGATTTAGAGTGAAGACTCGAATTCCCATTTCTCAACGGCCAATGGAGTTAACAACCCCTGCATCGAATCCCCCGTTCTTTTCATCTCTTTGAATTTCTCTTTCGTAATTCCTCCTCTTCTCTCCGGATTTCATCGGTTGTTTCCAGGGGCCACCACCACCATGTCCTCCGCCGTCGACAAGCCTTTTTTCTGTCACCAGTGTGATCGCGCGGTTACTGTTTCTGTATCCATTTCCTCCGATCCTCTTTGCCCACTTTGCCACGAGGGTTTTCTCGAAGAGTACGACAATTCCAATTCCAATCTCAATTTTGATCCCACGTCCTTTTTCCTTCCCCAACCTTTCCGTCGTTTCAATCCGCTTGTTTTCTCCTCTTCTACAGTTGTTGATCTTCAAAACCCTGGTATATTTTCAAGAACTTTGGCTCCGCCTTCCCAATCCACTTCCTCTGTTCACCACGAGCCCTACGATCCTTTTGTTTTTCTTCAGAATCATTTACGGAGCATCTTCGAAAGTGGTGCCGATGTTGTCTTTGAAATTCCTCGCCATTCTTCCCACTCTGGTGTTCCAATGCCTCAAAATGTGGGCGATTACTTCATTGGACCAGGCCTCGAGCAGCTTATTCAGTTGCTGGCTGAAAATGATCCCAACCGATATGGAACTCCGCCGGCTTCGAAATCGGCAATTGAGAAGCTTTCGACTATCACTGTTACTGAGGACCTTCTGAATTCGGAAATGAATCAGTGTGCCGTTTGCATAGATGATTTTGGAAAAGGTATTGTGGTTAAGCAAATGCCATGCAAGCATGTATTTCATGATTATTGTCTATTGCCTTGGCTTGAATTGCATAATTCATGCCCTATTTGCCGGTTCGAGTTGCCTACGGATGATTCTGATTACGAGAATCGAACACGTGGAAACCGGATGCAGGGGAATGAATCTTCCGGGGAAGAATCAGGGTCAGGAAGCAGTGGGAGCAGCATGAGGCGTGTTGAGAGGAGGTTTAGAGTGCCGCTGTGGTGGCCGTTTGGTAGCCGGAATGATGGGAGTGACAGTGAATGAGAGGATAGGCCTCAGGACAAACAAATACTGAATATGGTCTGGTAACTTTCATTCTCGTCTATTGTTTCTTTTTGTTTTAGCTTTTGCAAACTGCTTGCCATGCTGTTTTGCCCCCATGTCTTAGATTACTTTCATTGCATACATATGATTATTGAATATGATGCTGAGAGTCCCACACCCACATTGGAAAAACTAAGGAGATTCACACTCCATATCTCCATACTAGATAGATGGGTTATTTGAAATGTCCAAGATAGGTGAACCCAAAGAGACACCATCTTGAGGAGCATGAAACACTGGTAACTTGTTTGTGAAATGGCTAGCCCCTAAAGAAAAGGTAGAAGGACTAAAAGGAAACATAGGGGAAGAGACGGGAAGAAAATACAATAAGGATTGACAATTGATTCTTTTTTAAGTAATTGTTCAGACAATAACTTTATTTCATGTAAACTCAGTGAGAACAGTTTAAACAATAAATATATAAATATATTGAGTAATATTAAATATATCTCTAGTATGTTTCGATCTCCAGCCTACGTAAAGGGATATCTAATGTTTTTGGTTGTTTGACATGGGATCTTCAATCCTCCAGGGGGAATGGCGAAATAAATGGTTTGTTGTGTTCAGTTTATTAATTTGTAGAAAATGGAAACCTAGTATTATGGTTAGGATGATGGTGCGGCTGTCATTGGTACTAATGGGATTAAATAGTTGATGATCCTGTGGACATCCATCGGTAGTAAGAGGAAGAGCTTGCAATCTCTACAGCCACCTCTCTTTTTTATAGGCAACATGAAATTTCGTTGATGATACTCTGAAGAATCAATGGGACGAAGGATCTTCTGAAGATGATTGTAACAAATTTCTTCTTTGGAGTATTTTTTAAAAGCTTCCTTCTTGATGTTATAAACACAAAAAATTGTTATAGTTATAGTCTTTTGATGATTATAATGACTTGAAGGGCATTCTTTTGTTTGTCCTATAAATAAGAAACTTGACTGTATTGAAGGGGAAAAGAAGACAATACCACTTAAAATGACATCCCTCTCCCAAAGAATGCTAACTGCCGAAAATTCTTCCAATTGTCGAGAATCAACAATATTGGATAGCGACCAGAGAATCTGTAGCTTCTCTTGAAGGGGCTTTTCTCTACTGTCGGATTTTTTATTGTTTCATACCAATAAAACAAAAGAAAGTTAGGGAAGGAAAAACTGTCCATTCATACAAAACAGGGGGGGTGGGGGGGCTAGGGTGAGGATCTATCACTAAAGGACCCTTTAGAATCTGATTTAAATGCCCTCTTCCAGATCAAGGAAGTTGTAAATTTTGAAAAGCAGGTCCCTAGAATTCCCTCTCAATCATAGCACTATGAAGTTCTAGAGCATTTGAAGTCTTTTGTTGAAGAATGTGAAATAACTTTGGGTTGAGTTCTTGGAAGTAGATTTGTTCTCTGCTTCATCAATCAATTATCTCTGAATTTTGAATAGTGGATCACGAGGTTTTTGATGGATACTTCAATAGTTTTGCCATCTACAGCTTCTTGGTCAACCTAATACAGATTTAGTCATTCTTTCAAGTTTTAAAGGTACTTTAGGAGCCACGTTGAACCAAGGTTCTTGTTCGGCCCAGCTCCTCTTTATTTCAGAAGTTGTTTTTGGCAGTTCGGAGCTCTGGTTGTTTGTTTCATCATTTCTTGGCAGGCACGAGAACGGTTTCCTCTTGAAAAGGAATTTAAAGTTATTTTGCAGTTTGTTGGGTTGAAAGTTGTTAGCAAGTCTTCTCGGGCTCAAGATTGTTTCTTGCCTTTCCTTTGTGTTTCCTCTCCATTCCTCTTGAAGATATTACTGTGCAGGTCTTCCCTTTTCTTGGTTTTTCCTCTCCATTCATCTTGAAGCTATTGCTGTGCTAGTTTTCCGCTGAATTTGGGTTTCTTACTGAAAAACACTATTTTGTTCAAGTGCATAAGCTATATATGATTTTTTTTTACTTAGATATGAAGAAAACATTTTCTCAATAGCTTTACGAGTAGCATGTGGCTTTAAAAATACACGTACCTTTTAAATAGATTTTGTGTCTATTTCGAGTTTCTATGATATATCTATCCAAGTTTTCTTCTAGAAGTTGCTGGCGACTGAGCAGATCTGCAAGAATGAAGGAGGCCTTTCTCTGTCCATGTTTGGTATTCCTGACTACAATTTCTTAACATTTATAGGGTGTAAGAAGGTTGATTTGGGTCAATTCCATAGAACCTTAGTTATTTACCTATACTTGGGGAGTGGAAGAGGTGAATGTAAATGTGGAATGCTGTGTAGGGACATGCAACAGTTATGGTGTGGGATTTAGCAAATAAGTGAGGAGTTTTATCTATGTATATGCTGGCCGTGTAGCGAGGCATTTTTCTGGTTAGGATATGATCAGGGTCTGCAAATCATTGCTAGACGAGACCCAAAAGCTAAGTCTTAGTTGGGGTAAAGCTAAGCTGATGAGTTATGATAAACTTAATTTTATCAATGCTTTTAACTCATTCCTCGATTTGTGGATGCGAAAATTTGTAGAACGTTAATTGGCCAACAAGAGTACATCAATATAAACTAGATGAGGAATGGTGTTTAGGCCTCAAACAAAATTAAATAGATGGATTGCGTTAAATTTAATTATATCAACATTTATCAAATTCTCCTATGATCTTGTAATTCTCTGGCACAGATAAGAATTGTTGTATGTCAGATTGTTTCCTATCAAACTTTCCTTTGTCATCAATATCACATTTTTAGATCTGCTCTAGATGAAACAAACAAAGAGGATACTTCAAACTAACTAAAATGAAATGATATGATCAGTTTATGGAGTTATTGGATTTTTATTTATCTTATTCCTTACGTTTTAGTTTCAACTTGCACTCACACCCAATCATGCATGAAATTTAGATTATATTTATCTTATTACAGATTTTGAGTTGAATAGTTTATATTTTAATACGACTCTATAATGATTGAAATTTAGATTTTCTTTAGGTAATCTCTATACCTCGGTCCTCGATTGAGATGTACATTAGGCTTTTGAAAAGCATCTTTTAATCTTCATCTTCTTAATTTTGCTTTGTACTGTTGTCAACAATCATGCATGGCTTTAAGTTTATTGTGTGGAGATTATACATAAATGATATGAACACTCAGCTCGGTAGCCATGATTGGCATTGTAATGCAATATGAAGGGCCAAGGTAAATCCTTACCATAGCTTAAATTTTGTTTTTCAGGCAAACGGAGCACTGTTTTGACCTTAAGGTTGTCTCACATTTTTAGAAGAAATTTCTGCTGTAATACCTTTGCAAAGTCGGTGTCTTTTGGTAGCCTTTCGTTTGTTAGTTATTCATTTTTTTTCCTTTCACATTAGAATTTTGTTTCACATGCCAACATCAATTATGTACAGATGTGTTCATTTTGAGTGTCATTTCTTCTTTCAATGTAGAATGTAATACATTCCAAATCATCTCTTGTTCATAGCTGCTAGGAAAGGCTGCTTCTTCTTTTCAAATTTGTGTCTATTGGTGGTTATTAGGGAGTATGCAAATTTTCGTATGTAGTAGCGTGGTTTAAATTTGTATATAAACAAAGCATATTTGTTAAATATCTCTTTAGGATGGAGGGTGAAATGTATGTAAATAACATCTATCTCGAATACCAAATTTAAAAAGGGTTGTTAGTTAGCATTATTATTA

mRNA sequence

ATGTCCTCCGCCGTCGACAAGCCTTTTTTCTGTCACCAGTGTGATCGCGCGGTTACTGTTTCTGTATCCATTTCCTCCGATCCTCTTTGCCCACTTTGCCACGAGGGTTTTCTCGAAGAGTACGACAATTCCAATTCCAATCTCAATTTTGATCCCACGTCCTTTTTCCTTCCCCAACCTTTCCGTCGTTTCAATCCGCTTGTTTTCTCCTCTTCTACAGTTGTTGATCTTCAAAACCCTGGTATATTTTCAAGAACTTTGGCTCCGCCTTCCCAATCCACTTCCTCTGTTCACCACGAGCCCTACGATCCTTTTGTTTTTCTTCAGAATCATTTACGGAGCATCTTCGAAAGTGGTGCCGATGTTGTCTTTGAAATTCCTCGCCATTCTTCCCACTCTGGTGTTCCAATGCCTCAAAATGTGGGCGATTACTTCATTGGACCAGGCCTCGAGCAGCTTATTCAGTTGCTGGCTGAAAATGATCCCAACCGATATGGAACTCCGCCGGCTTCGAAATCGGCAATTGAGAAGCTTTCGACTATCACTGTTACTGAGGACCTTCTGAATTCGGAAATGAATCAGTGTGCCGTTTGCATAGATGATTTTGGAAAAGGTATTGTGGTTAAGCAAATGCCATGCAAGCATGTATTTCATGATTATTGTCTATTGCCTTGGCTTGAATTGCATAATTCATGCCCTATTTGCCGGTTCGAGTTGCCTACGGATGATTCTGATTACGAGAATCGAACACGTGGAAACCGGATGCAGGGGAATGAATCTTCCGGGGAAGAATCAGGGTCAGGAAGCAGTGGGAGCAGCATGAGGCGTGTTGAGAGGAGGTTTAGAGTGCCGCTGTGGTGGCCGTTTGGTAGCCGGAATGATGGGAGTGACAGTGAATGA

Coding sequence (CDS)

ATGTCCTCCGCCGTCGACAAGCCTTTTTTCTGTCACCAGTGTGATCGCGCGGTTACTGTTTCTGTATCCATTTCCTCCGATCCTCTTTGCCCACTTTGCCACGAGGGTTTTCTCGAAGAGTACGACAATTCCAATTCCAATCTCAATTTTGATCCCACGTCCTTTTTCCTTCCCCAACCTTTCCGTCGTTTCAATCCGCTTGTTTTCTCCTCTTCTACAGTTGTTGATCTTCAAAACCCTGGTATATTTTCAAGAACTTTGGCTCCGCCTTCCCAATCCACTTCCTCTGTTCACCACGAGCCCTACGATCCTTTTGTTTTTCTTCAGAATCATTTACGGAGCATCTTCGAAAGTGGTGCCGATGTTGTCTTTGAAATTCCTCGCCATTCTTCCCACTCTGGTGTTCCAATGCCTCAAAATGTGGGCGATTACTTCATTGGACCAGGCCTCGAGCAGCTTATTCAGTTGCTGGCTGAAAATGATCCCAACCGATATGGAACTCCGCCGGCTTCGAAATCGGCAATTGAGAAGCTTTCGACTATCACTGTTACTGAGGACCTTCTGAATTCGGAAATGAATCAGTGTGCCGTTTGCATAGATGATTTTGGAAAAGGTATTGTGGTTAAGCAAATGCCATGCAAGCATGTATTTCATGATTATTGTCTATTGCCTTGGCTTGAATTGCATAATTCATGCCCTATTTGCCGGTTCGAGTTGCCTACGGATGATTCTGATTACGAGAATCGAACACGTGGAAACCGGATGCAGGGGAATGAATCTTCCGGGGAAGAATCAGGGTCAGGAAGCAGTGGGAGCAGCATGAGGCGTGTTGAGAGGAGGTTTAGAGTGCCGCTGTGGTGGCCGTTTGGTAGCCGGAATGATGGGAGTGACAGTGAATGA

Protein sequence

MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPFRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELPTDDSDYENRTRGNRMQGNESSGEESGSGSSGSSMRRVERRFRVPLWWPFGSRNDGSDSE

Homology

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BLAST of CsaV3_5G020690 vs. NCBI nr
Match: XP_004149872.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >XP_011655156.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN50936.1 hypothetical protein Csa_5G350590 [Cucumis sativus])

HSP 1 Score: 582.0 bits (1499), Expect = 1.1e-162
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0


Query: 1   MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQP 60
           MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQP
Sbjct: 1   MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQP 60

Query: 61  FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA 120
           FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA
Sbjct: 61  FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA 120

Query: 121 DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST 180
           DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST
Sbjct: 121 DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST 180

Query: 181 ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP 240
           ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP
Sbjct: 181 ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP 240

Query: 241 TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDSE 300
           TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDSE
Sbjct: 241 TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDSE 299

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BLAST of CsaV3_5G020690 vs. NCBI nr
Match: XP_022938450.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 474.9 bits (1221), Expect = 2.0e-130
Identity = 228/298 (76.51%), Postives = 241/298 (80.87%), Query Frame = 0


Query: 3   SAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDN--SNSNLNFDPTSFFLPQP 62
           +AVDKPFFCHQCDRAVTV VS+SSDPLCP C+EGFLEEY+N         D  +  LP P
Sbjct: 8   AAVDKPFFCHQCDRAVTVIVSLSSDPLCPFCNEGFLEEYENXXXXXXXXXDRGTLLLPDP 67

Query: 63  FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA 122
           FR FNPLV SSSTVVDLQNPG+FSRTL+  SQS SSV  EPYDPFVFLQNHLR IF+SGA
Sbjct: 68  FRGFNPLVVSSSTVVDLQNPGLFSRTLSLASQSNSSVQPEPYDPFVFLQNHLRGIFDSGA 127

Query: 123 DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST 182
           DVVFEIPRH+SHSG  MPQNVGDYFIGPGLEQLIQLLA+NDPNRYGTPPASKSAIEKL T
Sbjct: 128 DVVFEIPRHASHSGFSMPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLPT 187

Query: 183 ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP 242
           +TVTEDLLNSEMNQCAVCID F K   VKQMPCKHVFHDYC+LPWLELHNSCP+CRFELP
Sbjct: 188 VTVTEDLLNSEMNQCAVCIDGFEKDTKVKQMPCKHVFHDYCILPWLELHNSCPVCRFELP 247

Query: 243 TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDS 299
           TDDSDYENRTR                        RVERRFRVPLWWPFG RNDGSDS
Sbjct: 248 TDDSDYENRTRGSQVQANESSGEESGSGNRGSNSGRVERRFRVPLWWPFGGRNDGSDS 305

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BLAST of CsaV3_5G020690 vs. NCBI nr
Match: XP_023551575.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 472.2 bits (1214), Expect = 1.3e-129
Identity = 228/298 (76.51%), Postives = 240/298 (80.54%), Query Frame = 0


Query: 3   SAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDN--SNSNLNFDPTSFFLPQP 62
           +AVDKPFFCHQCDRAVTV VS SSDPLCP C+EGFLEEY+N         D  +  LP P
Sbjct: 8   AAVDKPFFCHQCDRAVTVIVSPSSDPLCPFCNEGFLEEYENXXXXXXXXXDRGTLLLPDP 67

Query: 63  FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA 122
           FR FNPLV SSSTVVDLQNPG+FSRTL+  SQS SSV  EPYDPFVFLQNHLR IF+SGA
Sbjct: 68  FRGFNPLVVSSSTVVDLQNPGLFSRTLSLASQSNSSVQPEPYDPFVFLQNHLRGIFDSGA 127

Query: 123 DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST 182
           DVVFEIPRH+SHSG  MPQNVGDYFIGPGLEQLIQLLA+NDPNRYGTPPASKSAIEKL T
Sbjct: 128 DVVFEIPRHASHSGFSMPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSAIEKLPT 187

Query: 183 ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP 242
           +TVTEDLLNSEMNQCAVCID F K   VKQMPCKHVFHDYC+LPWLELHNSCP+CRFELP
Sbjct: 188 MTVTEDLLNSEMNQCAVCIDGFEKDTEVKQMPCKHVFHDYCILPWLELHNSCPVCRFELP 247

Query: 243 TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDS 299
           TDDSDYENRTR                        RVERRFRVPLWWPFG RNDGSDS
Sbjct: 248 TDDSDYENRTRASQVQANESSGEESGSGNRGSNSGRVERRFRVPLWWPFGGRNDGSDS 305

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BLAST of CsaV3_5G020690 vs. NCBI nr
Match: XP_023554317.1 (E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554326.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554330.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554338.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554347.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554356.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554365.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554375.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554385.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554392.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554402.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127
Identity = 224/301 (74.42%), Postives = 238/301 (79.07%), Query Frame = 0


Query: 2   SSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPF 61
           S+AVDK FFCHQCDR VTV+VS S +PLCP C+EGFLEEYD  +SN N D  SFFLP PF
Sbjct: 3   SAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPF 62

Query: 62  RRFNPLVFSSSTVVDLQNPGIFSRTLAPPS------QSTSSVHHEPYDPFVFLQNHLRSI 121
           R FNPL FSSSTVVDLQNPG+FSRTL+P S      QS SS   EP+DPFVFLQNHLR I
Sbjct: 63  RDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLRGI 122

Query: 122 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 181
           F+SGADVVFEI  H S SGV MPQNVGDYFIGPGLEQLIQLLAENDPNR+GTPPASKSAI
Sbjct: 123 FDSGADVVFEIQGHPSRSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 182

Query: 182 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 241
           EKL  +TVTEDLLNSEMNQCAVC+D F KGI VKQMPCKH+FHDYCLLPWLELHNSCP+C
Sbjct: 183 EKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 242

Query: 242 RFELPTDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDG 297
           RFEL TDDSDYENRTR                        RVER FRVPLWWPFG RNDG
Sbjct: 243 RFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDG 302

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BLAST of CsaV3_5G020690 vs. NCBI nr
Match: XP_022993143.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita maxima])

HSP 1 Score: 464.5 bits (1194), Expect = 2.7e-127
Identity = 234/298 (78.52%), Postives = 248/298 (83.22%), Query Frame = 0


Query: 3   SAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDN--SNSNLNFDPTSFFLPQP 62
           +AVDKPFFCHQCDRAVTV +S SSDPLCP C+EGFLEEY+N         D  +  LP P
Sbjct: 8   AAVDKPFFCHQCDRAVTVILSPSSDPLCPFCNEGFLEEYENXXXXXXXXXDRGTLLLPDP 67

Query: 63  FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA 122
           FR FNPLV SSSTVVDLQNPG+FSRTL+  SQS SSV  E YDPFVFLQNHLR IF+SGA
Sbjct: 68  FRGFNPLVVSSSTVVDLQNPGLFSRTLSLASQSNSSVQPEQYDPFVFLQNHLRGIFDSGA 127

Query: 123 DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST 182
           DVVFEIPRH+SHSG  MPQNVGDYFIGPGLEQLIQLLA+NDPNRYGTPPASKS IEKL  
Sbjct: 128 DVVFEIPRHASHSGFSMPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASKSVIEKLPN 187

Query: 183 ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP 242
           +TVTEDLLNSEMNQCAVCID F K   VKQMPCKHVFHDYC+LPWLELHNSCP+CRFELP
Sbjct: 188 VTVTEDLLNSEMNQCAVCIDGFEKDTEVKQMPCKHVFHDYCILPWLELHNSCPVCRFELP 247

Query: 243 TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDS 299
           TDDSDYENRTR           XXXXXXXXXXX  RVERRFRVPLWWPFG RNDG+DS
Sbjct: 248 TDDSDYENRTRGSQVQANESSGXXXXXXXXXXXXXRVERRFRVPLWWPFGGRNDGNDS 305

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BLAST of CsaV3_5G020690 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-85
Identity = 150/256 (58.59%), Postives = 185/256 (72.27%), Query Frame = 0


Query: 5   VDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYD--NSNSNLNFDPTS----FFLP 64
           VDK FFC+QC++ VT+S+S S+DP CP+C++GFLEEY+  N N +LNF+P S    F + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 65  QPFRRFNPLVFSSSTVV--DLQNPGIFSRTLAPPSQST-SSVHHEPYDPFVFLQNHLRSI 124
            PF    PL+F SS      +    +F  ++ P ++ST  +   + +DPF FLQNHL+++
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 136

Query: 125 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 184
             SG    F I  H S  G  MP N GDYF GPGLEQLIQ LAENDPNRYGTPPASKSAI
Sbjct: 137 RSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAI 196

Query: 185 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 244
           + L T+ VT+D+L SEMNQCAVC+D+F  G  VKQMPCKHVFH  CLLPWLELHNSCP+C
Sbjct: 197 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVC 256

Query: 245 RFELPTDDSDYENRTR 252
           RFELPTDD DYENR++
Sbjct: 257 RFELPTDDPDYENRSQ 272

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BLAST of CsaV3_5G020690 vs. TAIR10
Match: AT1G55530.1 (RING/U-box superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-39
Identity = 102/291 (35.05%), Postives = 141/291 (48.45%), Query Frame = 0


Query: 1   MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDP------TS 60
           M  AV   ++CH C +  TV+  + ++  CP C  GF+EE ++ + + + DP       S
Sbjct: 1   MEEAVVTRYWCHMCSQ--TVNPVMEAEIKCPFCQSGFVEEMEDDDDHDSSDPADVRANNS 60

Query: 61  FFLP-------QPF-RRFNPLVFS----------------SSTVVDLQNPGIFSRT---- 120
            + P        P  RR N  V S                    +D Q   I  R     
Sbjct: 61  LWAPILMELMNDPVRRRRNQSVESVEDNQNEVQTENNEDDGENDLDWQLQEILRRRRRHS 120

Query: 121 -------------LAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGADVVFEIPRHSSHS 180
                        L+  S+ST +  + P           R I  + ++    +   +   
Sbjct: 121 AAVLQLLQGIRAGLSVESESTGNGGNNPG----------RVILINTSNQTITVQNSADMD 180

Query: 181 GVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLSTITVTEDLLNSEMN 240
            VP   ++GDYFIGPG E L+Q LAENDPNRYGTPPA K A+E L+T+ + E L      
Sbjct: 181 SVP-AGSLGDYFIGPGFEMLLQRLAENDPNRYGTPPAKKEAVEALATVKIEETL------ 240

Query: 241 QCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELPTDDS 245
           QC+VC+DDF  G   K MPC H FH  CLLPWLELH+SCP+CR++LP D++
Sbjct: 241 QCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADEA 272

[Close]

BLAST of CsaV3_5G020690 vs. TAIR10
Match: AT5G56340.1 (RING/U-box superfamily protein)

HSP 1 Score: 152.1 bits (383), Expect = 5.3e-37
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 136 PMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLSTITVTEDLLNSEMNQC 195
           P   ++GDYFIGPGL+ L+Q LAENDPNR GTPPA K A+E L T+ + E L      QC
Sbjct: 206 PSLTSLGDYFIGPGLDLLLQHLAENDPNRQGTPPARKEAVEALPTVKIMEPL------QC 265

Query: 196 AVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELPTD-DSDYENRT 251
           +VC+DDF KG   K+MPCKH FH  C++PWLELH+SCP+CRFELP+  D D E +T
Sbjct: 266 SVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDDDETKT 315

[Close]

BLAST of CsaV3_5G020690 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 5.0e-35
Identity = 65/107 (60.75%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 140 NVGDYFIGPGLEQLIQLLAEND-PNRYGTPPASKSAIEKLSTITVTEDLLNSEMNQCAVC 199
           ++GDYFIGPG E L+Q LAEND  NRYGTPPA+K A+E L+ + + + LL     QC+VC
Sbjct: 174 SLGDYFIGPGFETLLQRLAENDLNNRYGTPPATKEAVEALAMVKIEDSLL-----QCSVC 233

Query: 200 IDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELPTDDSD 246
           +DDF  G+  K+MPCKH FH  CLLPWLELH+SCP+CR+ LPT D D
Sbjct: 234 LDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDD 275

[Close]

BLAST of CsaV3_5G020690 vs. TAIR10
Match: AT3G56580.2 (RING/U-box superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-32
Identity = 85/248 (34.27%), Postives = 124/248 (50.00%), Query Frame = 0


Query: 3   SAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYD----NSNSNLNFDPTSFFLP 62
           S++    +CH+C RAV +    + D +C  C  GF+EE D     ++ ++  DPT F L 
Sbjct: 2   SSIRNTHWCHRCQRAVWLR---ARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPT-FDLM 61

Query: 63  QPFRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFL--QNHLRSIF 122
           + F       F  S + +      + R ++    S  S       P +    Q   R   
Sbjct: 62  EAFS-----AFMRSRLAERS----YDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAG 121

Query: 123 ESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIE 182
              + V   +   +   G+    N GDYF GPGLE+LI+ L+    +R G PPA KS+I+
Sbjct: 122 GDNSSVEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHR-GPPPAPKSSID 181

Query: 183 KLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICR 242
            L TI +T+  L S  + C VC D+F      KQMPC H++H  C++PWL  HNSCP+CR
Sbjct: 182 ALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 235

Query: 243 FELPTDDS 245
            ELP+  S
Sbjct: 242 KELPSRGS 235

[Close]

BLAST of CsaV3_5G020690 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.5e-84
Identity = 150/256 (58.59%), Postives = 185/256 (72.27%), Query Frame = 0


Query: 5   VDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYD--NSNSNLNFDPTS----FFLP 64
           VDK FFC+QC++ VT+S+S S+DP CP+C++GFLEEY+  N N +LNF+P S    F + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 65  QPFRRFNPLVFSSSTVV--DLQNPGIFSRTLAPPSQST-SSVHHEPYDPFVFLQNHLRSI 124
            PF    PL+F SS      +    +F  ++ P ++ST  +   + +DPF FLQNHL+++
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 136

Query: 125 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 184
             SG    F I  H S  G  MP N GDYF GPGLEQLIQ LAENDPNRYGTPPASKSAI
Sbjct: 137 RSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAI 196

Query: 185 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 244
           + L T+ VT+D+L SEMNQCAVC+D+F  G  VKQMPCKHVFH  CLLPWLELHNSCP+C
Sbjct: 197 DALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVC 256

Query: 245 RFELPTDDSDYENRTR 252
           RFELPTDD DYENR++
Sbjct: 257 RFELPTDDPDYENRSQ 272

[Close]

BLAST of CsaV3_5G020690 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 7.5e-81
Identity = 160/313 (51.12%), Postives = 189/313 (60.38%), Query Frame = 0


Query: 6   DKPFFCHQCDRAVTVSVS-ISSDPLCPLCHEGFLEEYDNSNSN-----LNFDPTS----- 65
           +KPFFC+QC+R V V++S  SSDP CP+C+EGFLEEYDN N N     LN +P S     
Sbjct: 20  NKPFFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHD 79

Query: 66  --FFLPQPFRRFNPLVFSS--------STVVDLQNPGIFSRTLAPPSQSTSSVHHEP--Y 125
               L  PF    PL+F S           +D  NP +        S  T S   +P  +
Sbjct: 80  LFLTLSDPFASLLPLLFPSXXXXXXXXXXXIDPNNPSL--------SGPTRSGRGDPFAF 139

Query: 126 DPFVFLQNHLRSIFESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDP 185
           DPF F+QNHL  +  SGA + F I  + S  G  +P N+GDYFIGPGLEQLIQ LAENDP
Sbjct: 140 DPFTFIQNHLNDLRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDP 199

Query: 186 NRYGTPPASKSAIEKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCL 245
           NRYGTPPASKSAIE L  + +T+  LNSE NQCAVC+DDF +G   KQMPCKH++H  CL
Sbjct: 200 NRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCL 259

Query: 246 LPWLELHNSCPICRFELPTDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFR 296
           LPWLELHNSCP+CR ELPTDD DYE R R                       R VER FR
Sbjct: 260 LPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDN-RTVERSFR 319

[Close]

BLAST of CsaV3_5G020690 vs. Swiss-Prot
Match: sp|Q94AK4|RZF1_ARATH (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.2e-31
Identity = 85/248 (34.27%), Postives = 124/248 (50.00%), Query Frame = 0


Query: 3   SAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYD----NSNSNLNFDPTSFFLP 62
           S++    +CH+C RAV +    + D +C  C  GF+EE D     ++ ++  DPT F L 
Sbjct: 2   SSIRNTHWCHRCQRAVWLR---ARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPT-FDLM 61

Query: 63  QPFRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFL--QNHLRSIF 122
           + F       F  S + +      + R ++    S  S       P +    Q   R   
Sbjct: 62  EAFS-----AFMRSRLAERS----YDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAG 121

Query: 123 ESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIE 182
              + V   +   +   G+    N GDYF GPGLE+LI+ L+    +R G PPA KS+I+
Sbjct: 122 GDNSSVEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHR-GPPPAPKSSID 181

Query: 183 KLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICR 242
            L TI +T+  L S  + C VC D+F      KQMPC H++H  C++PWL  HNSCP+CR
Sbjct: 182 ALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 235

Query: 243 FELPTDDS 245
            ELP+  S
Sbjct: 242 KELPSRGS 235

[Close]

BLAST of CsaV3_5G020690 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.4e-31
Identity = 84/269 (31.23%), Postives = 134/269 (49.81%), Query Frame = 0


Query: 1   MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQP 60
           M+ A    ++CH+C++A  +  ++  +  CP C  GF+EE  +       +  +   P+P
Sbjct: 1   MAEAAITRYWCHECEQA--IEEAMVDEIKCPSCGGGFVEEMTDE----EIERLTNRQPEP 60

Query: 61  -FRRFNPLVFSSSTV--------VDLQNPGIFSR----------------TLAPPSQSTS 120
            F ++NP+     T+        +  +  G   R                 LA   +  S
Sbjct: 61  GFSQWNPIEHPGETMDSDDEDNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADDQERDS 120

Query: 121 SVHHEPYDPFVFLQNHLRSIFESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQ 180
           S+    ++  + LQ  +    E   D        ++  G+     + +Y +G GL  L+Q
Sbjct: 121 SILINAFNQALALQGSVLDPDEGQGDQ----GGSTNDDGL-----LEEYVLGAGLSLLLQ 180

Query: 181 LLAENDPNRYGTPPASKSAIEKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKH 240
            LAE+DP+R GTPPA K A+E L T+ +       E+  C+VC+DD   G   KQMPC+H
Sbjct: 181 HLAESDPSRNGTPPAKKEAVEALPTVKI------EEVVSCSVCLDDLEVGSQAKQMPCEH 240

Query: 241 VFHDYCLLPWLELHNSCPICRFELPTDDS 245
            FH  C+LPWLELH+SCP+CRFELP++++
Sbjct: 241 KFHSSCILPWLELHSSCPVCRFELPSEET 248

[Close]

BLAST of CsaV3_5G020690 vs. Swiss-Prot
Match: sp|O22197|RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.9e-29
Identity = 86/254 (33.86%), Postives = 123/254 (48.43%), Query Frame = 0


Query: 10  FCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPFRRFNPLVF 69
           +CH+C RAV +      +P+C  C  GF+EE D + ++  FD         FR    +V 
Sbjct: 9   WCHRCQRAVRLH---GQEPVCFYCGGGFVEELDMAQAS-PFD--------MFRSHRGVVE 68

Query: 70  SSSTVVDLQNPGIFSRT-LAPPSQ---------STSSVHHEPYDPFVFLQNHLRSIFESG 129
              T   +    +F R  LA  S          S+   +     P +     +   +   
Sbjct: 69  RDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVP--YRLT 128

Query: 130 ADVVFEIPRHSSHSGVPMPQ-NVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKL 189
            D   E   +    G+ + + N GDYF GPGLE+L + L+     R G PPA +SAI+ L
Sbjct: 129 GDNAVEALFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRR-GPPPAPRSAIDAL 188

Query: 190 STITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFE 249
            TI + +  L S  + C VC D+F  G   KQMPC H++H  C++PWL  HNSCP+CR E
Sbjct: 189 PTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQE 247

Query: 250 LP--TDDSDYENRT 251
           LP  +  S  +NRT
Sbjct: 249 LPSASGPSSSQNRT 247

[Close]

BLAST of CsaV3_5G020690 vs. TrEMBL
Match: tr|A0A0A0KT93|A0A0A0KT93_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G350590 PE=4 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 7.6e-163
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0


Query: 1   MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQP 60
           MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQP
Sbjct: 1   MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQP 60

Query: 61  FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA 120
           FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA
Sbjct: 61  FRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFESGA 120

Query: 121 DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST 180
           DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST
Sbjct: 121 DVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKLST 180

Query: 181 ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP 240
           ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP
Sbjct: 181 ITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPICRFELP 240

Query: 241 TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDSE 300
           TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDSE
Sbjct: 241 TDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDGSDSE 299

[Close]

BLAST of CsaV3_5G020690 vs. TrEMBL
Match: tr|A0A1S3BMB2|A0A1S3BMB2_CUCME (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103491101 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.6e-99
Identity = 183/207 (88.41%), Postives = 187/207 (90.34%), Query Frame = 0


Query: 1   MSSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDN--SNSNLNFDPTSFFLP 60
           MS AVDKPFFCHQCDRA+TVSVSISSDPLCPLCHEGFLEEYDN            SFFLP
Sbjct: 1   MSFAVDKPFFCHQCDRAITVSVSISSDPLCPLCHEGFLEEYDNXXXXXXXXXXXRSFFLP 60

Query: 61  QPFRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRSIFES 120
           QPFRRFNPLVFSSSTVVDLQNPGIFSRTLA P QS+SSVH EPYDPFVFLQNHLRSIFES
Sbjct: 61  QPFRRFNPLVFSSSTVVDLQNPGIFSRTLASPPQSSSSVHPEPYDPFVFLQNHLRSIFES 120

Query: 121 GADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAIEKL 180
           GADVVFEIP HS HSGVPMPQNVGDYFIGPGLEQLIQLLA+NDPNRYGTP ASKSAIEKL
Sbjct: 121 GADVVFEIPCHSFHSGVPMPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPSASKSAIEKL 180

Query: 181 STITVTEDLLNSEMNQCAVCIDDFGKG 206
           STITVTEDLLNSEMNQCA+CIDDF KG
Sbjct: 181 STITVTEDLLNSEMNQCAICIDDFEKG 207

[Close]

BLAST of CsaV3_5G020690 vs. TrEMBL
Match: tr|A0A2C9W2C5|A0A2C9W2C5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G056000 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.7e-88
Identity = 179/305 (58.69%), Postives = 217/305 (71.15%), Query Frame = 0


Query: 3   SAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSN---------SNLN-FDP 62
           SAV KP+FC+QC+R VT++VS S+DP CPLCHEGFLEEY+N N          NLN F  
Sbjct: 11  SAVAKPYFCYQCNRTVTITVSASADPFCPLCHEGFLEEYENPNFNSQNPNPIQNLNPFSD 70

Query: 63  TSFFLPQPFRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHL 122
            +F  P P     PL+FSSST +D QNP +F       +  T+S   + ++P  FL+NHL
Sbjct: 71  PNFSFPDPISTLLPLLFSSSTTIDFQNPNLFG------NSRTASSDPDAFNPMDFLRNHL 130

Query: 123 RSIFESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASK 182
           +++   GA + F I  H S     +P N+GDYFIGPGLEQLIQ LAENDPNRYGTPPASK
Sbjct: 131 QNLHSGGARIQFVIENHPSDP--RLPTNIGDYFIGPGLEQLIQQLAENDPNRYGTPPASK 190

Query: 183 SAIEKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSC 242
           SAI+ L T+ +TE+LLNSEMNQCAVC D+F KG   KQMPCKHV+H  C++PWLE+HNSC
Sbjct: 191 SAIDGLPTVKITEELLNSEMNQCAVCKDEFEKGADAKQMPCKHVYHKDCIVPWLEMHNSC 250

Query: 243 PICRFELPTDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSR 298
           P+CR+ELPTDD+DYE RTR XXXXXXXXXXXXXXX       R +ERRF + L WPFG +
Sbjct: 251 PVCRYELPTDDADYEIRTRGXXXXXXXXXXXXXXXN------RTLERRFSISLPWPFGRQ 301

[Close]

BLAST of CsaV3_5G020690 vs. TrEMBL
Match: tr|D7LAT9|D7LAT9_ARALL (Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_479513 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.7e-85
Identity = 164/303 (54.13%), Postives = 201/303 (66.34%), Query Frame = 0


Query: 5   VDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYD--NSNSNLNFDPTS----FFLP 64
           VDK FFC+QC+R VT+S+S S+DP CP+C++GFLEEY+  N N +LNF+P S    F + 
Sbjct: 17  VDKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDPNPNPSLNFNPNSVDSLFPMA 76

Query: 65  QPFRRFNPLVFSSSTV----VDLQNPGIFSRTLAPPSQST-SSVHHEPYDPFVFLQNHLR 124
            PF    PL+F SS      +DL +   F+ ++ P ++ST  +   + +DPF FLQNHL+
Sbjct: 77  DPFSTLLPLLFGSSAASPSGIDLMSSSFFAPSMQPQARSTQQNPQSDAFDPFTFLQNHLQ 136

Query: 125 SIFESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKS 184
           ++  SG  V F I  H S  G  MP N GDYF GPGLEQLIQ LAENDPNRYGTPPASKS
Sbjct: 137 NLRSSGTHVQFVIENHPSDLGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKS 196

Query: 185 AIEKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCP 244
           AI+ L T+ VT+D+L SEMNQCAVC+D+F  G  VKQMPCKHVFH  CLLPWL+LHNSCP
Sbjct: 197 AIDGLPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLQLHNSCP 256

Query: 245 ICRFELPTDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRN 297
           +CRFELPTDD DYENRT+                        +   RF + L WPF  R 
Sbjct: 257 VCRFELPTDDPDYENRTQGIQASGDGQGSVEG----------QQTPRFSIQLPWPF-RRQ 308

[Close]

BLAST of CsaV3_5G020690 vs. TrEMBL
Match: tr|A0A067KMS3|A0A067KMS3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05980 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.4e-84
Identity = 160/304 (52.63%), Postives = 197/304 (64.80%), Query Frame = 0


Query: 3   SAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNL--------NFDPTS 62
           +A  K FFC+QC+R VTV VS SSDP CP+CH+GFLEEY+N N +L            + 
Sbjct: 11  AARTKWFFCYQCNRTVTVPVSASSDPSCPICHDGFLEEYENPNPHLXXXXXXXXXXXDSI 70

Query: 63  FFLPQPFRRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQSTSSVHHEPYDPFVFLQNHLRS 122
           F  P P     PL+FSS+T +D QNP +   T       T+S   E ++P  FL+NH+++
Sbjct: 71  FSFPDPISTLLPLLFSSTT-IDFQNPNLLGNT------RTASSDPEAFNPMDFLRNHIQN 130

Query: 123 IFESGADVVFEIPRH-SSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKS 182
           +   GA + F I  H S   G  +P N+GDYFIGPGLEQLIQ LAENDPNRYGTPPASKS
Sbjct: 131 LQSGGARIQFVIENHPSDQGGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKS 190

Query: 183 AIEKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCP 242
           AI+ L T+ +TE++LNSE+NQCAVC D+F KG   KQMPCKHV+H+ C++PWLELHNSCP
Sbjct: 191 AIDALPTVNITEEMLNSELNQCAVCKDEFEKGAEAKQMPCKHVYHNDCIVPWLELHNSCP 250

Query: 243 ICRFELPTDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRN 298
           +CR+ELPTDDSDYE RTR                       R VERRF + L WPFG   
Sbjct: 251 VCRYELPTDDSDYETRTRVARESQGSNNTEGSVGDN-----RTVERRFSISLPWPFGRHG 302

The following BLAST results are available for this feature:

BLAST of CsaV3_5G020690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149872.1	1.1e-162	100.00	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >XP_01165515...	[more]
XP_022938450.1	2.0e-130	76.51	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_023551575.1	1.3e-129	76.51	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023554317.1	2.0e-127	74.42	E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >...	[more]
XP_022993143.1	2.7e-127	78.52	E3 ubiquitin-protein ligase RING1-like [Cucurbita maxima]	[more]

BLAST of CsaV3_5G020690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19950.1	1.4e-85	58.59	RING/U-box superfamily protein	[more]
AT1G55530.1	4.3e-39	35.05	RING/U-box superfamily protein	[more]
AT5G56340.1	5.3e-37	59.48	RING/U-box superfamily protein	[more]
AT3G13430.1	5.0e-35	60.75	RING/U-box superfamily protein	[more]
AT3G56580.2	1.8e-32	34.27	RING/U-box superfamily protein	[more]

BLAST of CsaV3_5G020690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LPN7\|RNG1L_ARATH	2.5e-84	58.59	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|P0CH30\|RING1_GOSHI	7.5e-81	51.12	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q94AK4\|RZF1_ARATH	3.2e-31	34.27	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
sp\|Q6AVN2\|SIRP1_ORYSJ	5.4e-31	31.23	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
sp\|O22197\|RHC1A_ARATH	3.9e-29	33.86	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]

BLAST of CsaV3_5G020690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT93\|A0A0A0KT93_CUCSA	7.6e-163	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G350590 PE=4 SV=1	[more]
tr\|A0A1S3BMB2\|A0A1S3BMB2_CUCME	1.6e-99	88.41	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103491101 P...	[more]
tr\|A0A2C9W2C5\|A0A2C9W2C5_MANES	4.7e-88	58.69	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G056000 PE=4 SV=...	[more]
tr\|D7LAT9\|D7LAT9_ARALL	3.7e-85	54.13	Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALY...	[more]
tr\|A0A067KMS3\|A0A067KMS3_JATCU	1.4e-84	52.63	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05980 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G020690.1	CsaV3_5G020690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 195..235 e-value: 5.9E-6 score: 35.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 193..236 e-value: 1.1E-12 score: 47.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 195..236 score: 12.283
None	No IPR available	PFAM	PF14369	zinc_ribbon_9	coord: 9..41 e-value: 1.2E-12 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..274
None	No IPR available	PANTHER	PTHR44679	FAMILY NOT NAMED	coord: 3..293
None	No IPR available	PANTHER	PTHR44679:SF1	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 3..293
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 174..244
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 158..242 e-value: 2.5E-20 score: 73.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G020690	CSPI05G13810	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G020690	Cucsa.014020	Cucumber (Gy14) v1	cgycucB328
CsaV3_5G020690	CmaCh15G007860	Cucurbita maxima (Rimu)	cmacucB0344
CsaV3_5G020690	CmaCh04G022470	Cucurbita maxima (Rimu)	cmacucB0890
CsaV3_5G020690	CmoCh04G023480	Cucurbita moschata (Rifu)	cmocucB0880
CsaV3_5G020690	CmoCh15G008150	Cucurbita moschata (Rifu)	cmocucB0340
CsaV3_5G020690	CsGy5G013660	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G020690	Carg17779	Silver-seed gourd	carcucB0516
CsaV3_5G020690	Carg01418	Silver-seed gourd	carcucB0870
CsaV3_5G020690	Cla009094	Watermelon (97103) v1	cucwmB442
CsaV3_5G020690	ClCG01G008200	Watermelon (Charleston Gray)	cucwcgB395
CsaV3_5G020690	Lsi09G008650	Bottle gourd (USVL1VR-Ls)	cuclsiB354
CsaV3_5G020690	Cla97C01G008530	Watermelon (97103) v2	cucwmbB360
CsaV3_5G020690	Bhi12G001017	Wax gourd	cucwgoB468

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G020690	Melon (DHL92) v3.5.1	cucmeB352
CsaV3_5G020690	Melon (DHL92) v3.6.1	cucmedB344