Carg17779 (gene) Silver-seed gourd

Overview
NameCarg17779
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase RING1
LocationCucurbita_argyrosperma_scaffold_082 : 562856 .. 563809 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTGGAGCCTTTGTGCCCGTTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCCCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTGTTCTCAAGAACTTTGAGTCCGGCTTCCCAGCTTTGGAATAGAAATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGACATCCTTCCCGCTCTGGCGTTTCAATGCCTCAAAATCTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAACTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCGATTGAGAAGCTTCAGAACGTGACTGTTACAGATGAGCTTTTGAATTCGGAAATGAACCAGTGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGACGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCGGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

mRNA sequence

ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTGGAGCCTTTGTGCCCGTTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCCCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTGTTCTCAAGAACTTTGAGTCCGGCTTCCCAGCTTTGGAATAGAAATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGACATCCTTCCCGCTCTGGCGTTTCAATGCCTCAAAATCTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAACTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCGATTGAGAAGCTTCAGAACGTGACTGTTACAGATGAGCTTTTGAATTCGGAAATGAACCAGTGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGACGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCGGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

Coding sequence (CDS)

ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTGGAGCCTTTGTGCCCGTTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCCCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTGTTCTCAAGAACTTTGAGTCCGGCTTCCCAGCTTTGGAATAGAAATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGACATCCTTCCCGCTCTGGCGTTTCAATGCCTCAAAATCTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAACTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCGATTGAGAAGCTTCAGAACGTGACTGTTACAGATGAGCTTTTGAATTCGGAAATGAACCAGTGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGACGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCGGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

Protein sequence

MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDGSGSGGGNDSEGEGSP
Homology
[Close]
BLAST of Carg17779 vs. NCBI nr
Match: XP_022960730.1 (E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 630.9 bits (1626), Expect = 2.3e-177
Identity = 301/303 (99.34%), Postives = 303/303 (100.00%), Query Frame = 0 

Query: 1   MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD 60
           MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD
Sbjct: 1   MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD 60

Query: 61  PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLR 120
           PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNR+QSDSSGQPEPFDPFVFLQNHLR
Sbjct: 61  PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDPFVFLQNHLR 120

Query: 121 GIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKS 180
           GIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKS
Sbjct: 121 GIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKS 180

Query: 181 AIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP 240
           AIEKLQNVTVT+ELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP
Sbjct: 181 AIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP 240

Query: 241 VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 300
           VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN
Sbjct: 241 VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 300

Query: 301 DGS 304
           DGS
Sbjct: 301 DGS 303

[Close]
BLAST of Carg17779 vs. NCBI nr
Match: XP_023554317.1 (E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554326.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554330.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554338.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554347.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554356.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554365.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554375.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554385.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554392.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554402.1 E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 630.6 bits (1625), Expect = 3.0e-177
Identity = 300/303 (99.01%), Postives = 303/303 (100.00%), Query Frame = 0 

Query: 1   MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD 60
           MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD
Sbjct: 1   MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD 60

Query: 61  PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLR 120
           PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLR
Sbjct: 61  PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLR 120

Query: 121 GIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKS 180
           GIFDSGADVVFEIQGHPSRSGVSMPQN+GDYFIGPGLEQLIQLLAENDPNRHGTPPASKS
Sbjct: 121 GIFDSGADVVFEIQGHPSRSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKS 180

Query: 181 AIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP 240
           AIEKLQNVTVT++LLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP
Sbjct: 181 AIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP 240

Query: 241 VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 300
           VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN
Sbjct: 241 VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 300

Query: 301 DGS 304
           DGS
Sbjct: 301 DGS 303

[Close]
BLAST of Carg17779 vs. NCBI nr
Match: XP_022990139.1 (E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 624.0 bits (1608), Expect = 2.8e-175
Identity = 298/303 (98.35%), Postives = 301/303 (99.34%), Query Frame = 0 

Query: 1   MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD 60
           MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFL D
Sbjct: 1   MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLLD 60

Query: 61  PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLR 120
           PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLR
Sbjct: 61  PFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLR 120

Query: 121 GIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKS 180
           GIFDSGADVVFEIQGHPS SGVSMPQN+GDYFIGPGLEQLIQLLAENDPNRHGTPPASKS
Sbjct: 121 GIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKS 180

Query: 181 AIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP 240
           AIEKLQNVTVT++LLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP
Sbjct: 181 AIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCP 240

Query: 241 VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 300
           VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN
Sbjct: 241 VCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 300

Query: 301 DGS 304
           DGS
Sbjct: 301 DGS 303

[Close]
BLAST of Carg17779 vs. NCBI nr
Match: XP_022141521.1 (E3 ubiquitin-protein ligase RING1 [Momordica charantia] >XP_022141522.1 E3 ubiquitin-protein ligase RING1 [Momordica charantia])

HSP 1 Score: 501.1 bits (1289), Expect = 2.7e-138
Identity = 240/305 (78.69%), Postives = 266/305 (87.21%), Query Frame = 0 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNAN--LDSRSFFLP 61
           +SA  DK FFCHQCDR VT+ VS S +PLCPFCNEGFLEEY+   S++N  LD      P
Sbjct: 12  NSADRDKPFFCHQCDRAVTITVSTSSDPLCPFCNEGFLEEYENSYSDSNDDLDRAPIHFP 71

Query: 62  DPFRDFNPLAF-SSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNH 121
           DPFR FNPL F SSS+V+DLQNPGLFSRT+ PASQ WNRNQSDS+ QPEPFDPF+FLQNH
Sbjct: 72  DPFRGFNPLVFSSSSSVIDLQNPGLFSRTMRPASQPWNRNQSDSTIQPEPFDPFLFLQNH 131

Query: 122 LRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPAS 181
           LRGIFDSGADVVFEIQGHPS S +SMPQN+GDYF+GPGLEQLIQLLAENDPNR+GTPPAS
Sbjct: 132 LRGIFDSGADVVFEIQGHPSHSVLSMPQNVGDYFVGPGLEQLIQLLAENDPNRYGTPPAS 191

Query: 182 KSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNS 241
           KSAIEKL  VTVT++LLNSEMNQCAVC+D F+ GI+VKQMPCKH+FHD CLLPWLELHNS
Sbjct: 192 KSAIEKLPAVTVTEDLLNSEMNQCAVCIDEFQIGIKVKQMPCKHVFHDDCLLPWLELHNS 251

Query: 242 CPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGG 301
           CPVCRFEL TDDSDYENRTRGRRVQ NE++G++ G  NSG S ERVER FRVPLWWPFGG
Sbjct: 252 CPVCRFELPTDDSDYENRTRGRRVQENEASGQQSGLDNSG-SGERVERRFRVPLWWPFGG 311

Query: 302 RNDGS 304
           RN+GS
Sbjct: 312 RNEGS 315

[Close]
BLAST of Carg17779 vs. NCBI nr
Match: XP_022938450.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 492.7 bits (1267), Expect = 9.6e-136
Identity = 241/304 (79.28%), Postives = 258/304 (84.87%), Query Frame = 0 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDT--FSSNANLDSRSFFLP 61
           S AAVDK FFCHQCDR VTV VS S +PLCPFCNEGFLEEY+          D  +  LP
Sbjct: 6   SLAAVDKPFFCHQCDRAVTVIVSLSSDPLCPFCNEGFLEEYENXXXXXXXXXDRGTLLLP 65

Query: 62  DPFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHL 121
           DPFR FNPL  SSSTVVDLQNPGLFSRTLS AS      QS+SS QPEP+DPFVFLQNHL
Sbjct: 66  DPFRGFNPLVVSSSTVVDLQNPGLFSRTLSLAS------QSNSSVQPEPYDPFVFLQNHL 125

Query: 122 RGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASK 181
           RGIFDSGADVVFEI  H S SG SMPQN+GDYFIGPGLEQLIQLLA+NDPNR+GTPPASK
Sbjct: 126 RGIFDSGADVVFEIPRHASHSGFSMPQNVGDYFIGPGLEQLIQLLADNDPNRYGTPPASK 185

Query: 182 SAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSC 241
           SAIEKL  VTVT++LLNSEMNQCAVC+DGFEK  +VKQMPCKH+FHDYC+LPWLELHNSC
Sbjct: 186 SAIEKLPTVTVTEDLLNSEMNQCAVCIDGFEKDTKVKQMPCKHVFHDYCILPWLELHNSC 245

Query: 242 PVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGR 301
           PVCRFEL TDDSDYENRTRG +VQANES+GEE GSGN GS+S RVER FRVPLWWPFGGR
Sbjct: 246 PVCRFELPTDDSDYENRTRGSQVQANESSGEESGSGNRGSNSGRVERRFRVPLWWPFGGR 303

Query: 302 NDGS 304
           NDGS
Sbjct: 306 NDGS 303

[Close]
BLAST of Carg17779 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 306.6 bits (784), Expect = 1.8e-83
Identity = 150/262 (57.25%), Postives = 183/262 (69.85%), Query Frame = 0 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLD-----SRSFF-LP 65
           VDK FFC+QC++ VT+++S+S +P CP CN+GFLEEY+  + N +L+     S SFF + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 66  DPFRDFNPLAFSSSTVV--DLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQN 125
           DPF    PL F SS      +    LF  ++ P ++   +N      Q + FDPF FLQN
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNP-----QSDAFDPFTFLQN 136

Query: 126 HLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPA 185
           HL+ +  SG    F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTPPA
Sbjct: 137 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 196

Query: 186 SKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHN 245
           SKSAI+ L  V VT ++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWLELHN
Sbjct: 197 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 256

Query: 246 SCPVCRFELATDDSDYENRTRG 260
           SCPVCRFEL TDD DYENR++G
Sbjct: 257 SCPVCRFELPTDDPDYENRSQG 273

[Close]
BLAST of Carg17779 vs. TAIR10
Match: AT5G56340.1 (RING/U-box superfamily protein)

HSP 1 Score: 158.3 bits (399), Expect = 7.8e-39
Identity = 87/175 (49.71%), Postives = 105/175 (60.00%), Query Frame = 0 

Query: 134 QGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTDE 193
           Q HPS +      +LGDYFIGPGL+ L+Q LAENDPNR GTPPA K A+E L  V + + 
Sbjct: 203 QNHPSLT------SLGDYFIGPGLDLLLQHLAENDPNRQGTPPARKEAVEALPTVKIMEP 262

Query: 194 LLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATD---- 253
           L      QC+VCLD FEKG E K+MPCKH FH  C++PWLELH+SCPVCRFEL +     
Sbjct: 263 L------QCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDD 322

Query: 254 -----DSDYENRTRGRRVQANESNGEEPGSGNSGSSSE-RVERSFRVPLWWPFGG 299
                DS+   RTR  R  +N +  E  G+ + G   E R     R    WPF G
Sbjct: 323 DETKTDSERVLRTRNVRETSNGNVVENVGNADRGREDEVRSGNGRRFSFPWPFSG 365

[Close]
BLAST of Carg17779 vs. TAIR10
Match: AT1G55530.1 (RING/U-box superfamily protein)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-38
Identity = 105/287 (36.59%), Postives = 141/287 (49.13%), Query Frame = 0 

Query: 5   AVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRD 64
           AV   ++CH C + V   +   ++  CPFC  GF+EE +    + + D      P   R 
Sbjct: 4   AVVTRYWCHMCSQTVNPVMEAEIK--CPFCQSGFVEEMEDDDDHDSSD------PADVRA 63

Query: 65  FNPLAFSSSTVVDLQN-PGLFSRTLSPASQLWNRN--QSDSSGQPEPFDPFVFLQNHLRG 124
            N L   +  +++L N P    R  S  S   N+N  Q++++      D    LQ  LR 
Sbjct: 64  NNSL--WAPILMELMNDPVRRRRNQSVESVEDNQNEVQTENNEDDGENDLDWQLQEILRR 123

Query: 125 IFDSGADVVFEIQGHPSRSGVSMPQ----------------------------------- 184
                A V+  +QG   R+G+S+                                     
Sbjct: 124 RRRHSAAVLQLLQG--IRAGLSVESESTGNGGNNPGRVILINTSNQTITVQNSADMDSVP 183

Query: 185 --NLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTDELLNSEMNQCAV 244
             +LGDYFIGPG E L+Q LAENDPNR+GTPPA K A+E L  V + + L      QC+V
Sbjct: 184 AGSLGDYFIGPGFEMLLQRLAENDPNRYGTPPAKKEAVEALATVKIEETL------QCSV 243

Query: 245 CLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDS 252
           CLD FE G E K MPC H FH  CLLPWLELH+SCPVCR++L  D++
Sbjct: 244 CLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADEA 272

[Close]
BLAST of Carg17779 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 96/280 (34.29%), Postives = 130/280 (46.43%), Query Frame = 0 

Query: 5   AVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRD 64
           A + S++CH C R V   + + +   C FC  GF+EE D    +   D  S + P     
Sbjct: 4   ASETSYWCHMCSRSVIPLIQDEIIK-CNFCQSGFVEEMDNNDDHQAAD--SLWTPILMEM 63

Query: 65  FNPLAFSSSTVVDLQNPGL----------------------FSRTLSPASQLWNRNQSDS 124
            N                                        +  L    ++  R+ +  
Sbjct: 64  MNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDITHQLEEIRRIRTRHSTAI 123

Query: 125 SGQPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGV--------SMPQ-NLGDYFI 184
               +     + +++         +++V  I     R  V        S+P  +LGDYFI
Sbjct: 124 VNLLQGIRAGLLIESENNEDNPDNSELVVLINSFNQRIRVHQDSVDTTSVPSGSLGDYFI 183

Query: 185 GPGLEQLIQLLAEND-PNRHGTPPASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKG 244
           GPG E L+Q LAEND  NR+GTPPA+K A+E L  V + D LL     QC+VCLD FE G
Sbjct: 184 GPGFETLLQRLAENDLNNRYGTPPATKEAVEALAMVKIEDSLL-----QCSVCLDDFEIG 243

Query: 245 IEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSD 253
           +E K+MPCKH FH  CLLPWLELH+SCPVCR+ L T D D
Sbjct: 244 MEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDD 275

[Close]
BLAST of Carg17779 vs. TAIR10
Match: AT2G40830.2 (RING-H2 finger C1A)

HSP 1 Score: 139.0 bits (349), Expect = 4.9e-33
Identity = 93/257 (36.19%), Postives = 130/257 (50.58%), Query Frame = 0 

Query: 11  FCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRDFNPLAF 70
           +CH+C R V +   +  EP+C +C  GF+EE D   ++           D FR    +  
Sbjct: 9   WCHRCQRAVRL---HGQEPVCFYCGGGFVEELDMAQASPF---------DMFRSHRGVVE 68

Query: 71  SSST--VVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFL-----QNHLRGIF 130
              T  ++D  +  + +R    +     R ++ SSG PE F     L     Q   R   
Sbjct: 69  RDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSG-PENFPGLAPLLIFGGQVPYRLTG 128

Query: 131 DSGADVVFEIQGHPSRSGVSMPQ-NLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 190
           D+  + +F   G P   G+ + + N GDYF GPGLE+L + L+     R G PPA +SAI
Sbjct: 129 DNAVEALFN-GGSP---GIGITRGNTGDYFFGPGLEELFEQLSAG-TTRRGPPPAPRSAI 188

Query: 191 EKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 250
           + L  + +    L S  + C VC D FE G E KQMPC HI+H  C++PWL  HNSCPVC
Sbjct: 189 DALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVC 247

Query: 251 RFEL--ATDDSDYENRT 258
           R EL  A+  S  +NRT
Sbjct: 249 RQELPSASGPSSSQNRT 247

[Close]
BLAST of Carg17779 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.4e-82
Identity = 165/317 (52.05%), Postives = 193/317 (60.88%), Query Frame = 0 

Query: 7   DKSFFCHQCDRDVTVAVS-NSLEPLCPFCNEGFLEEYDTFSS-------NANLDSRSFF- 66
           +K FFC+QC+R V V +S  S +P CP CNEGFLEEYD  +        N N +S  F  
Sbjct: 20  NKPFFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHD 79

Query: 67  ----LPDPFRDFNPLAFSS--------STVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQ 126
               L DPF    PL F S           +D  NP L   T S              G 
Sbjct: 80  LFLTLSDPFASLLPLLFPSXXXXXXXXXXXIDPNNPSLSGPTRS------------GRGD 139

Query: 127 PEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLA 186
           P  FDPF F+QNHL  +  SGA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ LA
Sbjct: 140 PFAFDPFTFIQNHLNDLRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLA 199

Query: 187 ENDPNRHGTPPASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFH 246
           ENDPNR+GTPPASKSAIE L  V +T   LNSE NQCAVC+D FE+G E KQMPCKH++H
Sbjct: 200 ENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYH 259

Query: 247 DYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVE 303
             CLLPWLELHNSCPVCR EL TDD DYE R RG +  +  ++G+  G  + G  +  VE
Sbjct: 260 KDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDG-DNRTVE 319

[Close]
BLAST of Carg17779 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.2e-82
Identity = 150/262 (57.25%), Postives = 183/262 (69.85%), Query Frame = 0 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLD-----SRSFF-LP 65
           VDK FFC+QC++ VT+++S+S +P CP CN+GFLEEY+  + N +L+     S SFF + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 66  DPFRDFNPLAFSSSTVV--DLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQN 125
           DPF    PL F SS      +    LF  ++ P ++   +N      Q + FDPF FLQN
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNP-----QSDAFDPFTFLQN 136

Query: 126 HLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPA 185
           HL+ +  SG    F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTPPA
Sbjct: 137 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 196

Query: 186 SKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHN 245
           SKSAI+ L  V VT ++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWLELHN
Sbjct: 197 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 256

Query: 246 SCPVCRFELATDDSDYENRTRG 260
           SCPVCRFEL TDD DYENR++G
Sbjct: 257 SCPVCRFELPTDDPDYENRSQG 273

[Close]
BLAST of Carg17779 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-34
Identity = 102/295 (34.58%), Postives = 154/295 (52.20%), Query Frame = 0 

Query: 1   MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPD 60
           M+ AA+ + ++CH+C++ +  A+ + ++  CP C  GF+EE  T      L +R    P+
Sbjct: 1   MAEAAITR-YWCHECEQAIEEAMVDEIK--CPSCGGGFVEEM-TDEEIERLTNRQ---PE 60

Query: 61  P-FRDFNPLAFSSSTV-VDLQNPGL------FSRTLSPASQLWNRNQS--DSSGQPEPFD 120
           P F  +NP+     T+  D ++  L      F R    AS L     S  D     +  D
Sbjct: 61  PGFSQWNPIEHPGETMDSDDEDNDLGREFEGFIRRHRRASTLRRVLDSIHDDLADDQERD 120

Query: 121 PFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQN-LGDYFIGPGLEQLIQLLAENDP 180
             + +    + +   G+ V+   +G   + G +     L +Y +G GL  L+Q LAE+DP
Sbjct: 121 SSILINAFNQALALQGS-VLDPDEGQGDQGGSTNDDGLLEEYVLGAGLSLLLQHLAESDP 180

Query: 181 NRHGTPPASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCL 240
           +R+GTPPA K A+E L  V +       E+  C+VCLD  E G + KQMPC+H FH  C+
Sbjct: 181 SRNGTPPAKKEAVEALPTVKI------EEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCI 240

Query: 241 LPWLELHNSCPVCRFELATDDS-DYENRTRGRRVQANESNGEEPGSGNSGSSSER 284
           LPWLELH+SCPVCRFEL ++++ D    +   RV+ +       G GN   SS R
Sbjct: 241 LPWLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNR 281

[Close]
BLAST of Carg17779 vs. Swiss-Prot
Match: sp|O22197|RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.8e-32
Identity = 93/257 (36.19%), Postives = 130/257 (50.58%), Query Frame = 0 

Query: 11  FCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRDFNPLAF 70
           +CH+C R V +   +  EP+C +C  GF+EE D   ++           D FR    +  
Sbjct: 9   WCHRCQRAVRL---HGQEPVCFYCGGGFVEELDMAQASPF---------DMFRSHRGVVE 68

Query: 71  SSST--VVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFL-----QNHLRGIF 130
              T  ++D  +  + +R    +     R ++ SSG PE F     L     Q   R   
Sbjct: 69  RDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSG-PENFPGLAPLLIFGGQVPYRLTG 128

Query: 131 DSGADVVFEIQGHPSRSGVSMPQ-NLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 190
           D+  + +F   G P   G+ + + N GDYF GPGLE+L + L+     R G PPA +SAI
Sbjct: 129 DNAVEALFN-GGSP---GIGITRGNTGDYFFGPGLEELFEQLSAG-TTRRGPPPAPRSAI 188

Query: 191 EKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 250
           + L  + +    L S  + C VC D FE G E KQMPC HI+H  C++PWL  HNSCPVC
Sbjct: 189 DALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVC 247

Query: 251 RFEL--ATDDSDYENRT 258
           R EL  A+  S  +NRT
Sbjct: 249 RQELPSASGPSSSQNRT 247

[Close]
BLAST of Carg17779 vs. Swiss-Prot
Match: sp|Q94AK4|RZF1_ARATH (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-31
Identity = 87/248 (35.08%), Postives = 122/248 (49.19%), Query Frame = 0 

Query: 4   AAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFR 63
           +++  + +CH+C R V +    + + +C +C  GF+EE D   S A+ D       D   
Sbjct: 2   SSIRNTHWCHRCQRAVWL---RARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPTFDLME 61

Query: 64  DFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLRGIF 123
            F+  AF  S + +       S  L  A        S+S     P   F   Q   R   
Sbjct: 62  AFS--AFMRSRLAERSYDREISGRLGSAG-------SESFSNLAPLLIFGG-QAPFRLAG 121

Query: 124 DSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIE 183
              + V   + G     G++   N GDYF GPGLE+LI+ L+    +R G PPA KS+I+
Sbjct: 122 GDNSSVEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHR-GPPPAPKSSID 181

Query: 184 KLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCR 243
            L  + +T + L S  + C VC D FE   E KQMPC HI+H  C++PWL  HNSCPVCR
Sbjct: 182 ALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 235

Query: 244 FELATDDS 252
            EL +  S
Sbjct: 242 KELPSRGS 235

[Close]
BLAST of Carg17779 vs. TrEMBL
Match: tr|A0A0A0KT93|A0A0A0KT93_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G350590 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 8.6e-125
Identity = 221/301 (73.42%), Postives = 238/301 (79.07%), Query Frame = 0 

Query: 3   SAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPF 62
           S+AVDK FFCHQCDR VTV+VS S +PLCP C+EGFLEEYD  +SN N D  SFFLP PF
Sbjct: 2   SSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPF 61

Query: 63  RDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLRGI 122
           R FNPL FSSSTVVDLQNPG+FSRTL+P S      QS SS   EP+DPFVFLQNHLR I
Sbjct: 62  RRFNPLVFSSSTVVDLQNPGIFSRTLAPPS------QSTSSVHHEPYDPFVFLQNHLRSI 121

Query: 123 FDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 182
           F+SGADVVFEI  H S SGV MPQN+GDYFIGPGLEQLIQLLAENDPNR+GTPPASKSAI
Sbjct: 122 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 181

Query: 183 EKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 242
           EKL  +TVT++LLNSEMNQCAVC+D F KGI VKQMPCKH+FHDYCLLPWLELHNSCP+C
Sbjct: 182 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 241

Query: 243 RFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDG 302
           RFEL TDDSDYENRTR                        RVER FRVPLWWPFG RNDG
Sbjct: 242 RFELPTDDSDYENRTRXXXXXXXXXXXXXXXXXXXXXXMRRVERRFRVPLWWPFGSRNDG 296

Query: 303 S 304
           S
Sbjct: 302 S 296

[Close]
BLAST of Carg17779 vs. TrEMBL
Match: tr|R0G651|R0G651_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v10014036mg PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.5e-84
Identity = 165/311 (53.05%), Postives = 204/311 (65.59%), Query Frame = 0 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA----NLDSRSFF 61
           +SAA DK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+  S N     NL+S   F
Sbjct: 39  ASAAADKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDRSPNLPPNFNLNSDDSF 98

Query: 62  LP--DPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDP 121
            P  DPF    PL F SS      +D  +   F  ++ P ++      +    Q + FDP
Sbjct: 99  FPMADPFSTLLPLLFGSSAASPSGMDFMSSSFFGPSMQPQAR-----STQQIPQSDAFDP 158

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ HPS +   MP NLGDYF GPGLEQLIQ LAENDPNR
Sbjct: 159 VSFLQNHLQHLRSSGTHVQFVIENHPSDAAHRMPGNLGDYFFGPGLEQLIQQLAENDPNR 218

Query: 182 HGTPPASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT ++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 219 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 278

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCRFEL+TDD DYE+R +G  +QA+       G G   S  ++  R F + 
Sbjct: 279 WLQLHNSCPVCRFELSTDDPDYEHRAQG--IQAS-------GDGQGSSEGQQTPRRFSIQ 334

Query: 302 LWWPFGGRNDG 303
           L WPF  R DG
Sbjct: 339 LPWPF-RRQDG 334

[Close]
BLAST of Carg17779 vs. TrEMBL
Match: tr|D7LAT9|D7LAT9_ARALL (Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_479513 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 164/308 (53.25%), Postives = 202/308 (65.58%), Query Frame = 0 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYD------TFSSNANLDSRSFFLP 65
           VDK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+      + + N N     F + 
Sbjct: 17  VDKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDPNPNPSLNFNPNSVDSLFPMA 76

Query: 66  DPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFL 125
           DPF    PL F SS      +DL +   F+ ++ P ++   +N      Q + FDPF FL
Sbjct: 77  DPFSTLLPLLFGSSAASPSGIDLMSSSFFAPSMQPQARSTQQNP-----QSDAFDPFTFL 136

Query: 126 QNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTP 185
           QNHL+ +  SG  V F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTP
Sbjct: 137 QNHLQNLRSSGTHVQFVIENHPSDLGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTP 196

Query: 186 PASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLEL 245
           PASKSAI+ L  V VT ++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWL+L
Sbjct: 197 PASKSAIDGLPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLQL 256

Query: 246 HNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWP 304
           HNSCPVCRFEL TDD DYENRT+G  +QA+       G G      ++  R F + L WP
Sbjct: 257 HNSCPVCRFELPTDDPDYENRTQG--IQAS-------GDGQGSVEGQQTPR-FSIQLPWP 308

[Close]
BLAST of Carg17779 vs. TrEMBL
Match: tr|A0A1J3IWG9|A0A1J3IWG9_NOCCA (E3 ubiquitin-protein ligase RING1-like (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR1280_c0_g1_i1_g.3253 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 159/304 (52.30%), Postives = 201/304 (66.12%), Query Frame = 0 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYD---TFSSNANLDSRSFF- 61
           ++ A++K FFC+QCDR VT++VS++++P CP CN GFLEEY+     +   NL+   FF 
Sbjct: 46  AATAIEKMFFCYQCDRTVTISVSSTVDPFCPRCNGGFLEEYEEERNPNPAPNLNPGGFFP 105

Query: 62  LPDPFRDFNPLAFS-----SSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPF 121
           + DPF  F PL F      S+TV+D  +P LF  ++   S    + Q +   Q + FDP 
Sbjct: 106 MADPFSSFLPLIFGPAGSPSTTVMDFMSPSLFGPSMQARST--PQQQQNQHPQADAFDPV 165

Query: 122 VFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRH 181
            FLQNHL+ +  SG  V F I+ HPS  G  +P NLGDYF GPGLEQLIQ LAENDPNR+
Sbjct: 166 SFLQNHLQHLRSSGTHVQFVIEDHPSDPGQRIPGNLGDYFFGPGLEQLIQQLAENDPNRY 225

Query: 182 GTPPASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPW 241
           GTPPASKSAI+ L  V VT ++L SEMNQCAVC+D FE G + KQMPCKH+FH  CLLPW
Sbjct: 226 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDAKQMPCKHVFHQDCLLPW 285

Query: 242 LELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPL 297
           L+LHNSCPVCR+EL TDD DYENR +G+        G+  G G      ++  R F + L
Sbjct: 286 LQLHNSCPVCRYELPTDDPDYENRAQGQA-------GQTSGDGQGSVEGQQTPRRFSIQL 340

[Close]
BLAST of Carg17779 vs. TrEMBL
Match: tr|A0A1J3D5S2|A0A1J3D5S2_NOCCA (E3 ubiquitin-protein ligase RING1-like (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR12476_c0_g1_i1_g.39928 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 159/304 (52.30%), Postives = 201/304 (66.12%), Query Frame = 0 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYD---TFSSNANLDSRSFF- 61
           ++ A++K FFC+QCDR VT++VS++++P CP CN GFLEEY+     +   NL+   FF 
Sbjct: 46  AATAIEKMFFCYQCDRTVTISVSSTVDPFCPRCNGGFLEEYEEERNPNPAPNLNPGGFFP 105

Query: 62  LPDPFRDFNPLAFS-----SSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPF 121
           + DPF  F PL F      S+TV+D  +P LF  ++   S    + Q +   Q + FDP 
Sbjct: 106 MADPFSSFLPLIFGPAGSPSTTVMDFMSPSLFGPSMQARST--PQQQQNQHPQADAFDPV 165

Query: 122 VFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRH 181
            FLQNHL+ +  SG  V F I+ HPS  G  +P NLGDYF GPGLEQLIQ LAENDPNR+
Sbjct: 166 SFLQNHLQHLRSSGTHVQFVIEDHPSDPGQRIPGNLGDYFFGPGLEQLIQQLAENDPNRY 225

Query: 182 GTPPASKSAIEKLQNVTVTDELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPW 241
           GTPPASKSAI+ L  V VT ++L SEMNQCAVC+D FE G + KQMPCKH+FH  CLLPW
Sbjct: 226 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDAKQMPCKHVFHQDCLLPW 285

Query: 242 LELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPL 297
           L+LHNSCPVCR+EL TDD DYENR +G+        G+  G G      ++  R F + L
Sbjct: 286 LQLHNSCPVCRYELPTDDPDYENRAQGQA-------GQTSGDGQGSVEGQQTPRRFSIQL 340

The following BLAST results are available for this feature:
BLAST of Carg17779 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960730.12.3e-17799.34E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita moschata][more]
XP_023554317.13.0e-17799.01E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita pepo subsp. pepo] >... [more]
XP_022990139.12.8e-17598.35E3 ubiquitin-protein ligase RING1-like isoform X1 [Cucurbita maxima][more]
XP_022141521.12.7e-13878.69E3 ubiquitin-protein ligase RING1 [Momordica charantia] >XP_022141522.1 E3 ubiqu... [more]
XP_022938450.19.6e-13679.28E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata][more]
BLAST of Carg17779 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.11.8e-8357.25RING/U-box superfamily protein[more]
AT5G56340.17.8e-3949.71RING/U-box superfamily protein[more]
AT1G55530.13.9e-3836.59RING/U-box superfamily protein[more]
AT3G13430.11.1e-3534.29RING/U-box superfamily protein[more]
AT2G40830.24.9e-3336.19RING-H2 finger C1A[more]
BLAST of Carg17779 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0CH30|RING1_GOSHI1.4e-8252.05E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
sp|Q8LPN7|RNG1L_ARATH3.2e-8257.25E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
sp|Q6AVN2|SIRP1_ORYSJ1.9e-3434.58E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI... [more]
sp|O22197|RHC1A_ARATH8.8e-3236.19Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
sp|Q94AK4|RZF1_ARATH2.6e-3135.08E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV... [more]
BLAST of Carg17779 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KT93|A0A0A0KT93_CUCSA8.6e-12573.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G350590 PE=4 SV=1[more]
tr|R0G651|R0G651_9BRAS2.5e-8453.05Uncharacterized protein (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v100140... [more]
tr|D7LAT9|D7LAT9_ARALL4.3e-8453.25Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALY... [more]
tr|A0A1J3IWG9|A0A1J3IWG9_NOCCA1.3e-8352.30E3 ubiquitin-protein ligase RING1-like (Fragment) OS=Noccaea caerulescens OX=107... [more]
tr|A0A1J3D5S2|A0A1J3D5S2_NOCCA1.3e-8352.30E3 ubiquitin-protein ligase RING1-like (Fragment) OS=Noccaea caerulescens OX=107... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17779-RACarg17779-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 202..242
e-value: 5.5E-7
score: 39.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 200..243
e-value: 4.1E-13
score: 49.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 202..243
score: 12.342
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 9..42
e-value: 1.7E-12
score: 47.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..284
NoneNo IPR availablePANTHERPTHR44679:SF1E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKEcoord: 3..302
NoneNo IPR availablePANTHERPTHR44679FAMILY NOT NAMEDcoord: 3..302
NoneNo IPR availableCDDcd16667RING-H2_RNF126_likecoord: 201..243
e-value: 5.42892E-21
score: 83.136
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 181..250
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 164..249
e-value: 3.2E-21
score: 76.7