CmaCh04G022470 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G022470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr04 : 15673566 .. 15674519 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTAGAGCCTTTGTGCCCATTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCTCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTATTCTCAAGAACTTTGAGTCCGGCTTCACAGCTTTGGAATAGGAATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGTCATCCTTCCCTCTCTGGCGTTTCAATGCCTCAAAATGTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAGCTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCAATTGAGAAGCTTCAGAACGTGACTGTTACAGAGGATCTTTTGAATTCGGAAATGAACCAATGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGATGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCAGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

mRNA sequence

ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTAGAGCCTTTGTGCCCATTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCTCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTATTCTCAAGAACTTTGAGTCCGGCTTCACAGCTTTGGAATAGGAATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGTCATCCTTCCCTCTCTGGCGTTTCAATGCCTCAAAATGTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAGCTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCAATTGAGAAGCTTCAGAACGTGACTGTTACAGAGGATCTTTTGAATTCGGAAATGAACCAATGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGATGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCAGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

Coding sequence (CDS)

ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTAGAGCCTTTGTGCCCATTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCTCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTATTCTCAAGAACTTTGAGTCCGGCTTCACAGCTTTGGAATAGGAATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGTCATCCTTCCCTCTCTGGCGTTTCAATGCCTCAAAATGTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAGCTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCAATTGAGAAGCTTCAGAACGTGACTGTTACAGAGGATCTTTTGAATTCGGAAATGAACCAATGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGATGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCAGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

Protein sequence

MSSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLLDPFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDGSSSGGGNDSEGEGSP
Homology
[Close]
BLAST of CmaCh04G022470 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.8e-85
Identity = 171/320 (53.44%), Postives = 208/320 (65.00%), Query Frame = 1 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLD-----SRSFF-LL 65
           VDK FFC+QC++ VT+++S+S +P CP CN+GFLEEY+  + N +L+     S SFF + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 66  DPFRDFNPLAFSSSTVVD--LQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQN 125
           DPF    PL F SS      +    LF  ++ P ++   +N      Q + FDPF FLQN
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNP-----QSDAFDPFTFLQN 136

Query: 126 HLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPA 185
           HL+ +  SG    F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTPPA
Sbjct: 137 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 196

Query: 186 SKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHN 245
           SKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWLELHN
Sbjct: 197 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 256

Query: 246 SCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGN-SGSSSERVERSFRVPLWWPF 305
           SCPVCRFEL TDD DYENR++G       S G   G G+  G  + R    F + L WPF
Sbjct: 257 SCPVCRFELPTDDPDYENRSQG-------SQGSGDGQGSVEGQQTPR----FSIQLPWPF 316

Query: 306 GGRNDGSSSGGGNDSEGEGS 317
             R DGS SG G    G G+
Sbjct: 317 -RRQDGSGSGSGAPGTGGGN 319

[Close]
BLAST of CmaCh04G022470 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.9e-83
Identity = 169/329 (51.37%), Postives = 201/329 (61.09%), Query Frame = 1 

Query: 7   DKSFFCHQCDRDVTVAVSN-SLEPLCPFCNEGFLEEYDTFSSNA-------NLDSRSFF- 66
           +K FFC+QC+R V V +S  S +P CP CNEGFLEEYD  + N        N +S  F  
Sbjct: 20  NKPFFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHD 79

Query: 67  ----LLDPFRDFNPLAF--------SSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQ 126
               L DPF    PL F        SSS  +D  NP L   T S              G 
Sbjct: 80  LFLTLSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRS------------GRGD 139

Query: 127 PEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLA 186
           P  FDPF F+QNHL  +  SGA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ LA
Sbjct: 140 PFAFDPFTFIQNHLNDLRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLA 199

Query: 187 ENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFH 246
           ENDPNR+GTPPASKSAIE L  V +T+  LNSE NQCAVC+D FE+G E KQMPCKH++H
Sbjct: 200 ENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYH 259

Query: 247 DYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVE 306
             CLLPWLELHNSCPVCR EL TDD DYE R RG +  +  ++G+  G  + G  +  VE
Sbjct: 260 KDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDG-DNRTVE 319

Query: 307 RSFRVPLWWPFGGRNDGSSSGGGNDSEGE 315
           RSFR+ L WPF  R  G + G   ++  E
Sbjct: 320 RSFRISLPWPFQARGPGPAPGDNAETRQE 335

[Close]
BLAST of CmaCh04G022470 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.1e-34
Identity = 108/312 (34.62%), Postives = 152/312 (48.72%), Query Frame = 1 

Query: 11  FCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLLDPFRDFNPLAF 70
           +CH+C R V +   +  EP+C +C  GF+EE D   ++           D FR    +  
Sbjct: 9   WCHRCQRAVRL---HGQEPVCFYCGGGFVEELDMAQASP---------FDMFRSHRGVVE 68

Query: 71  SSST--VVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFL-----QNHLRGIF 130
              T  ++D  +  + +R    +     R ++ SSG PE F     L     Q   R   
Sbjct: 69  RDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSG-PENFPGLAPLLIFGGQVPYRLTG 128

Query: 131 DSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIE 190
           D+  + +F   G P + G++   N GDYF GPGLE+L + L+     R G PPA +SAI+
Sbjct: 129 DNAVEALFN-GGSPGI-GITRG-NTGDYFFGPGLEELFEQLSAGT-TRRGPPPAPRSAID 188

Query: 191 KLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCR 250
            L  + + +  L S  + C VC D FE G E KQMPC HI+H  C++PWL  HNSCPVCR
Sbjct: 189 ALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCR 248

Query: 251 FEL--ATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRND 310
            EL  A+  S  +NRT   R   + S+     S  +G+       SF     WPF  R+ 
Sbjct: 249 QELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSF-----WPF--RSS 296

Query: 311 GSSSGGGNDSEG 314
           GSSS    +  G
Sbjct: 309 GSSSSSTQNRGG 296

[Close]
BLAST of CmaCh04G022470 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.6e-28
Identity = 92/300 (30.67%), Postives = 139/300 (46.33%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEP--LCPFCNEGFLEEYDTFSSNANLDSRSFFLL 61
           ++  +  S++C+ C R ++V          LCP+CN GF+EE +  S+            
Sbjct: 23  TTTTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSN------------ 82

Query: 62  DPFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHL 121
                      S+   +    P + S   +  S +  R     S +   F+P + L    
Sbjct: 83  -----------STVAAIPASTPEVRSVEETHRSIIRRRR----SNRRTSFNPVIVLHGGG 142

Query: 122 RGIF------DSGADVVFEIQGHP------SLSGVS-MPQNVGDYFIGPGLEQLIQLLAE 181
            G        + G     E + +       S SG+  +P +V +  +G G E+L++ L++
Sbjct: 143 GGGAGERVENEEGDGATRERRAYEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQ 202

Query: 182 -----NDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCK 241
                N   R G PPASKSAIE L  V +++    +E N CAVC + FE GIE ++MPCK
Sbjct: 203 IEASGNGIGRSGNPPASKSAIESLPRVEISDCHTKAEAN-CAVCTEVFEAGIEGREMPCK 262

Query: 242 HIFHDYCLLPWLELHNSCPVCRFELATDD---SDYENRTRGRRVQANESNGEEPGSGNSG 279
           HIFH  C++PWL + NSCPVCRFEL +D    S+ E    G  +      G   G  N+G
Sbjct: 263 HIFHGDCIVPWLSIRNSCPVCRFELPSDPIQRSNEEEHAVGMTIWRLPGGGFAVGRFNAG 294

[Close]
BLAST of CmaCh04G022470 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-27
Identity = 86/277 (31.05%), Postives = 132/277 (47.65%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPL----CPFCNEGFLEEYDTFSSNANLDSRSFF 61
           ++  +  S++C+ C R V+V        +    CP C+ GF+E+ +              
Sbjct: 10  TTTPITASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQIND------------- 69

Query: 62  LLDPFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSD-----SSGQPEPFDPF 121
                        SSS   +L  P       S   +  N N+        SG+   F+P 
Sbjct: 70  -------------SSSAATELTIPA------STEVRSINNNRRSVIRRRRSGRRPSFNPV 129

Query: 122 VFLQNHLRGIFDSGADV-------VFEIQ-GHPSLSGVS-MPQNVGDYFIGPGLEQLIQL 181
           + LQ    G  + G +         FE      S SG+  +P +V +  +G G E+L++ 
Sbjct: 130 IVLQGGA-GEREEGEEGDAARDRRAFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQ 189

Query: 182 LAENDPN-----RHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQM 241
           L++ + +     R G PPASKSAIE L  V +++  + SE N CAVC + FE   E ++M
Sbjct: 190 LSQIEASATGIGRSGNPPASKSAIESLPRVEISDCHIGSEAN-CAVCTEIFETETEAREM 249

Query: 242 PCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYEN 256
           PCKH+FHD C++PWL + NSCPVCRFEL ++ +   N
Sbjct: 250 PCKHLFHDDCIVPWLSIRNSCPVCRFELPSEPNRRSN 252

[Close]
BLAST of CmaCh04G022470 vs. TrEMBL
Match: A0A0A0KT93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G350590 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 7.0e-137
Identity = 240/303 (79.21%), Postives = 257/303 (84.82%), Query Frame = 1 

Query: 3   SAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLLDPF 62
           S+AVDK FFCHQCDR VTV+VS S +PLCP C+EGFLEEYD  +SN N D  SFFL  PF
Sbjct: 2   SSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPF 61

Query: 63  RDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLRGI 122
           R FNPL FSSSTVVDLQNPG+FSRTL+P SQ      S SS   EP+DPFVFLQNHLR I
Sbjct: 62  RRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQ------STSSVHHEPYDPFVFLQNHLRSI 121

Query: 123 FDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 182
           F+SGADVVFEI  H S SGV MPQNVGDYFIGPGLEQLIQLLAENDPNR+GTPPASKSAI
Sbjct: 122 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 181

Query: 183 EKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 242
           EKL  +TVTEDLLNSEMNQCAVC+D F KGI VKQMPCKH+FHDYCLLPWLELHNSCP+C
Sbjct: 182 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 241

Query: 243 RFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDG 302
           RFEL TDDSDYENRTRG R+Q NES+GEE GSG+SGSS  RVER FRVPLWWPFG RNDG
Sbjct: 242 RFELPTDDSDYENRTRGNRMQGNESSGEESGSGSSGSSMRRVERRFRVPLWWPFGSRNDG 298

Query: 303 SSS 306
           S S
Sbjct: 302 SDS 298

[Close]
BLAST of CmaCh04G022470 vs. TrEMBL
Match: V4LVM7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021059mg PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.3e-87
Identity = 173/326 (53.07%), Postives = 218/326 (66.87%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA--NLDSRSFF-L 61
           ++ A+DK FFC+QCDR VTV+VS++++P CP CN GFLEEY+  + N   NL+S  FF +
Sbjct: 11  TAPAIDKMFFCYQCDRTVTVSVSSTVDPFCPRCNGGFLEEYEEPNPNPAPNLNSGGFFPM 70

Query: 62  LDPFRDFNPLAFS-----SSTVVDLQNPGLFSRTLSPAS--QLWNRNQSDSSGQPEPFDP 121
            DPF    PL F+     SS+V+D  NP  F  ++ P S  Q   ++Q  +  Q E FDP
Sbjct: 71  ADPFSTLLPLLFAPPGTNSSSVMDFINPSFFGPSMQPRSTQQPQQQHQHQNLPQGEAFDP 130

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ +PS     MP N+GDYF GPGLEQLIQ LAENDPNR
Sbjct: 131 ITFLQNHLQHLRSSGTHVQFVIESNPSDPSNRMPGNLGDYFFGPGLEQLIQQLAENDPNR 190

Query: 182 HGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 191 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 250

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCR+EL TDD DYENR +G+        G+  G G      ++  RSF + 
Sbjct: 251 WLQLHNSCPVCRYELPTDDPDYENRAQGQ-------GGQSSGDGQGSVEGQQTPRSFSIQ 310

Query: 302 LWWPFGGRN-DGSSSGGGNDSEGEGS 317
           L WPF  R+  GS  G G+ + G G+
Sbjct: 311 LPWPFRRRDGSGSEPGSGSGAPGTGA 329

[Close]
BLAST of CmaCh04G022470 vs. TrEMBL
Match: A0A061E403_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_007702 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 4.7e-85
Identity = 172/334 (51.50%), Postives = 207/334 (61.98%), Query Frame = 1 

Query: 8   KSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDT---------FSSNANLDSRS--- 67
           K FFC+QC+R V V +S S +P CP CNEGFLEEY+           S N NL+  S   
Sbjct: 19  KPFFCYQCNRTVNVTISPSSDPSCPICNEGFLEEYENPNPNQGSAFQSPNPNLNPFSEPY 78

Query: 68  FFLLDPFRDFNPLAFSSSTV-----------VDLQNPGLFSRTLSPASQLWNRNQSDSSG 127
             L DPF    PL F SS+            +D+ NP LF  T S            + G
Sbjct: 79  LSLSDPFSSLLPLLFPSSSSSTTTSSSSPASIDVHNPSLFGSTRS------------ARG 138

Query: 128 QPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLL 187
            P  FDPF F+QNHL  +  SGA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ L
Sbjct: 139 DPFAFDPFAFIQNHLNDLRSSGAHIEFVIQNNPSEPGFRLPANIGDYFIGPGLEQLIQQL 198

Query: 188 AENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIF 247
           AENDPNR+GTPPASKSAI+ L +V +T++ LNSE NQCAVC+D FE+G + KQMPCKH++
Sbjct: 199 AENDPNRYGTPPASKSAIDSLPSVKITKNHLNSEFNQCAVCMDEFEEGTQAKQMPCKHLY 258

Query: 248 HDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSS--- 307
           H  C+LPWLELHNSCPVCR EL TDD DYE R RG +     ++GE  G G+SG  S   
Sbjct: 259 HKDCILPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTGGGNDGEGSGGGDSGQRSAGD 318

Query: 308 -ERVERSFRVPLWWPFGGRNDGSSSGGGNDSEGE 315
              VERSFR+ L WPF  R  GS SG   ++  E
Sbjct: 319 NRTVERSFRISLPWPFRARGSGSGSGDNAETRQE 340

[Close]
BLAST of CmaCh04G022470 vs. TrEMBL
Match: D7LAT9_ARALL (Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479513 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 4.7e-85
Identity = 169/321 (52.65%), Postives = 209/321 (65.11%), Query Frame = 1 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRS------FFLL 65
           VDK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+  + N +L+         F + 
Sbjct: 17  VDKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDPNPNPSLNFNPNSVDSLFPMA 76

Query: 66  DPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFL 125
           DPF    PL F SS      +DL +   F+ ++ P ++   +N      Q + FDPF FL
Sbjct: 77  DPFSTLLPLLFGSSAASPSGIDLMSSSFFAPSMQPQARSTQQNP-----QSDAFDPFTFL 136

Query: 126 QNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTP 185
           QNHL+ +  SG  V F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTP
Sbjct: 137 QNHLQNLRSSGTHVQFVIENHPSDLGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTP 196

Query: 186 PASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLEL 245
           PASKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWL+L
Sbjct: 197 PASKSAIDGLPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLQL 256

Query: 246 HNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWP 305
           HNSCPVCRFEL TDD DYENRT+G  +QA+       G G      ++  R F + L WP
Sbjct: 257 HNSCPVCRFELPTDDPDYENRTQG--IQAS-------GDGQGSVEGQQTPR-FSIQLPWP 316

Query: 306 FGGRNDGSSSGGGNDSEGEGS 317
           F  R DGS SG G      G+
Sbjct: 317 F-RRQDGSGSGSGAPGASGGN 321

[Close]
BLAST of CmaCh04G022470 vs. TrEMBL
Match: R0G651_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10014036mg PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.2e-85
Identity = 168/325 (51.69%), Postives = 210/325 (64.62%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA------NLDSRS 61
           +SAA DK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+  S N       N D   
Sbjct: 39  ASAAADKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDRSPNLPPNFNLNSDDSF 98

Query: 62  FFLLDPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDP 121
           F + DPF    PL F SS      +D  +   F  ++ P ++      +    Q + FDP
Sbjct: 99  FPMADPFSTLLPLLFGSSAASPSGMDFMSSSFFGPSMQPQAR-----STQQIPQSDAFDP 158

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ HPS +   MP N+GDYF GPGLEQLIQ LAENDPNR
Sbjct: 159 VSFLQNHLQHLRSSGTHVQFVIENHPSDAAHRMPGNLGDYFFGPGLEQLIQQLAENDPNR 218

Query: 182 HGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 219 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 278

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCRFEL+TDD DYE+R +G  +QA+       G G   S  ++  R F + 
Sbjct: 279 WLQLHNSCPVCRFELSTDDPDYEHRAQG--IQAS-------GDGQGSSEGQQTPRRFSIQ 338

Query: 302 LWWPFGGRNDGSSSGGGNDSEGEGS 317
           L WPF  R DGS S  G+ S   G+
Sbjct: 339 LPWPF-RRQDGSGSDPGSGSGAPGA 348

[Close]
BLAST of CmaCh04G022470 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 317.4 bits (812), Expect = 1.0e-86
Identity = 171/320 (53.44%), Postives = 208/320 (65.00%), Query Frame = 1 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLD-----SRSFF-LL 65
           VDK FFC+QC++ VT+++S+S +P CP CN+GFLEEY+  + N +L+     S SFF + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 66  DPFRDFNPLAFSSSTVVD--LQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQN 125
           DPF    PL F SS      +    LF  ++ P ++   +N      Q + FDPF FLQN
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNP-----QSDAFDPFTFLQN 136

Query: 126 HLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPA 185
           HL+ +  SG    F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTPPA
Sbjct: 137 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 196

Query: 186 SKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHN 245
           SKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWLELHN
Sbjct: 197 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 256

Query: 246 SCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGN-SGSSSERVERSFRVPLWWPF 305
           SCPVCRFEL TDD DYENR++G       S G   G G+  G  + R    F + L WPF
Sbjct: 257 SCPVCRFELPTDDPDYENRSQG-------SQGSGDGQGSVEGQQTPR----FSIQLPWPF 316

Query: 306 GGRNDGSSSGGGNDSEGEGS 317
             R DGS SG G    G G+
Sbjct: 317 -RRQDGSGSGSGAPGTGGGN 319

[Close]
BLAST of CmaCh04G022470 vs. TAIR10
Match: AT5G56340.1 (AT5G56340.1 RING/U-box superfamily protein)

HSP 1 Score: 161.4 bits (407), Expect = 9.2e-40
Identity = 92/188 (48.94%), Postives = 111/188 (59.04%), Query Frame = 1 

Query: 134 QGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTED 193
           Q HPSL+      ++GDYFIGPGL+ L+Q LAENDPNR GTPPA K A+E L  V + E 
Sbjct: 203 QNHPSLT------SLGDYFIGPGLDLLLQHLAENDPNRQGTPPARKEAVEALPTVKIMEP 262

Query: 194 LLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATD---- 253
           L      QC+VCLD FEKG E K+MPCKH FH  C++PWLELH+SCPVCRFEL +     
Sbjct: 263 L------QCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDD 322

Query: 254 -----DSDYENRTRGRRVQANESNGEEPGSGNSGSSSE-RVERSFRVPLWWPFGGRNDGS 312
                DS+   RTR  R  +N +  E  G+ + G   E R     R    WPF G    S
Sbjct: 323 DETKTDSERVLRTRNVRETSNGNVVENVGNADRGREDEVRSGNGRRFSFPWPFSGLFSSS 378

[Close]
BLAST of CmaCh04G022470 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-37
Identity = 117/351 (33.33%), Postives = 155/351 (44.16%), Query Frame = 1 

Query: 5   AVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEY---DTFSSNANLDSRSFFLLDP 64
           AV   ++CH C + V   +   ++  CPFC  GF+EE    D   S+   D R+      
Sbjct: 4   AVVTRYWCHMCSQTVNPVMEAEIK--CPFCQSGFVEEMEDDDDHDSSDPADVRA------ 63

Query: 65  FRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRN--QSDSSGQPEPFDPFVFLQNHL 124
               N   ++   +  + +P    R  S  S   N+N  Q++++      D    LQ  L
Sbjct: 64  ----NNSLWAPILMELMNDPVRRRRNQSVESVEDNQNEVQTENNEDDGENDLDWQLQEIL 123

Query: 125 RGIFDSGADVVFEIQG---------HPSLSGVSMPQNV---------------------- 184
           R      A V+  +QG           + +G + P  V                      
Sbjct: 124 RRRRRHSAAVLQLLQGIRAGLSVESESTGNGGNNPGRVILINTSNQTITVQNSADMDSVP 183

Query: 185 ----GDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAV 244
               GDYFIGPG E L+Q LAENDPNR+GTPPA K A+E L  V + E L      QC+V
Sbjct: 184 AGSLGDYFIGPGFEMLLQRLAENDPNRYGTPPAKKEAVEALATVKIEETL------QCSV 243

Query: 245 CLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTR------ 297
           CLD FE G E K MPC H FH  CLLPWLELH+SCPVCR++L  D++  ++ T       
Sbjct: 244 CLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADEAKTDSVTTTSDNNG 303

[Close]
BLAST of CmaCh04G022470 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-35
Identity = 108/312 (34.62%), Postives = 152/312 (48.72%), Query Frame = 1 

Query: 11  FCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLLDPFRDFNPLAF 70
           +CH+C R V +   +  EP+C +C  GF+EE D   ++           D FR    +  
Sbjct: 9   WCHRCQRAVRL---HGQEPVCFYCGGGFVEELDMAQASP---------FDMFRSHRGVVE 68

Query: 71  SSST--VVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFL-----QNHLRGIF 130
              T  ++D  +  + +R    +     R ++ SSG PE F     L     Q   R   
Sbjct: 69  RDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSG-PENFPGLAPLLIFGGQVPYRLTG 128

Query: 131 DSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIE 190
           D+  + +F   G P + G++   N GDYF GPGLE+L + L+     R G PPA +SAI+
Sbjct: 129 DNAVEALFN-GGSPGI-GITRG-NTGDYFFGPGLEELFEQLSAGT-TRRGPPPAPRSAID 188

Query: 191 KLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCR 250
            L  + + +  L S  + C VC D FE G E KQMPC HI+H  C++PWL  HNSCPVCR
Sbjct: 189 ALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCR 248

Query: 251 FEL--ATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRND 310
            EL  A+  S  +NRT   R   + S+     S  +G+       SF     WPF  R+ 
Sbjct: 249 QELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSF-----WPF--RSS 296

Query: 311 GSSSGGGNDSEG 314
           GSSS    +  G
Sbjct: 309 GSSSSSTQNRGG 296

[Close]
BLAST of CmaCh04G022470 vs. TAIR10
Match: AT3G13430.1 (AT3G13430.1 RING/U-box superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-34
Identity = 82/156 (52.56%), Postives = 100/156 (64.10%), Query Frame = 1 

Query: 138 SLSGVSMPQ-NVGDYFIGPGLEQLIQLLAEND-PNRHGTPPASKSAIEKLQNVTVTEDLL 197
           S+   S+P  ++GDYFIGPG E L+Q LAEND  NR+GTPPA+K A+E L  V + + LL
Sbjct: 164 SVDTTSVPSGSLGDYFIGPGFETLLQRLAENDLNNRYGTPPATKEAVEALAMVKIEDSLL 223

Query: 198 NSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYEN 257
                QC+VCLD FE G+E K+MPCKH FH  CLLPWLELH+SCPVCR+ L T D D E 
Sbjct: 224 -----QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDD-EP 283

Query: 258 RT---RGRRVQANE--------SNGEEPGSGNSGSS 281
           +T     R    NE        SNG  P S ++ SS
Sbjct: 284 KTDAETSRNDDNNEDISNASMASNGSSPDSSSNNSS 313

[Close]
BLAST of CmaCh04G022470 vs. NCBI nr
Match: gi|449464310|ref|XP_004149872.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 495.0 bits (1273), Expect = 1.0e-136
Identity = 240/303 (79.21%), Postives = 257/303 (84.82%), Query Frame = 1 

Query: 3   SAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLLDPF 62
           S+AVDK FFCHQCDR VTV+VS S +PLCP C+EGFLEEYD  +SN N D  SFFL  PF
Sbjct: 2   SSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPF 61

Query: 63  RDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFLQNHLRGI 122
           R FNPL FSSSTVVDLQNPG+FSRTL+P SQ      S SS   EP+DPFVFLQNHLR I
Sbjct: 62  RRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQ------STSSVHHEPYDPFVFLQNHLRSI 121

Query: 123 FDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 182
           F+SGADVVFEI  H S SGV MPQNVGDYFIGPGLEQLIQLLAENDPNR+GTPPASKSAI
Sbjct: 122 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 181

Query: 183 EKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 242
           EKL  +TVTEDLLNSEMNQCAVC+D F KGI VKQMPCKH+FHDYCLLPWLELHNSCP+C
Sbjct: 182 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 241

Query: 243 RFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDG 302
           RFEL TDDSDYENRTRG R+Q NES+GEE GSG+SGSS  RVER FRVPLWWPFG RNDG
Sbjct: 242 RFELPTDDSDYENRTRGNRMQGNESSGEESGSGSSGSSMRRVERRFRVPLWWPFGSRNDG 298

Query: 303 SSS 306
           S S
Sbjct: 302 SDS 298

[Close]
BLAST of CmaCh04G022470 vs. NCBI nr
Match: gi|567196964|ref|XP_006406436.1| (hypothetical protein EUTSA_v10021059mg [Eutrema salsugineum])

HSP 1 Score: 331.3 bits (848), Expect = 1.9e-87
Identity = 173/326 (53.07%), Postives = 218/326 (66.87%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA--NLDSRSFF-L 61
           ++ A+DK FFC+QCDR VTV+VS++++P CP CN GFLEEY+  + N   NL+S  FF +
Sbjct: 11  TAPAIDKMFFCYQCDRTVTVSVSSTVDPFCPRCNGGFLEEYEEPNPNPAPNLNSGGFFPM 70

Query: 62  LDPFRDFNPLAFS-----SSTVVDLQNPGLFSRTLSPAS--QLWNRNQSDSSGQPEPFDP 121
            DPF    PL F+     SS+V+D  NP  F  ++ P S  Q   ++Q  +  Q E FDP
Sbjct: 71  ADPFSTLLPLLFAPPGTNSSSVMDFINPSFFGPSMQPRSTQQPQQQHQHQNLPQGEAFDP 130

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ +PS     MP N+GDYF GPGLEQLIQ LAENDPNR
Sbjct: 131 ITFLQNHLQHLRSSGTHVQFVIESNPSDPSNRMPGNLGDYFFGPGLEQLIQQLAENDPNR 190

Query: 182 HGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 191 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 250

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCR+EL TDD DYENR +G+        G+  G G      ++  RSF + 
Sbjct: 251 WLQLHNSCPVCRYELPTDDPDYENRAQGQ-------GGQSSGDGQGSVEGQQTPRSFSIQ 310

Query: 302 LWWPFGGRN-DGSSSGGGNDSEGEGS 317
           L WPF  R+  GS  G G+ + G G+
Sbjct: 311 LPWPFRRRDGSGSEPGSGSGAPGTGA 329

[Close]
BLAST of CmaCh04G022470 vs. NCBI nr
Match: gi|297830662|ref|XP_002883213.1| (zinc finger family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 322.8 bits (826), Expect = 6.8e-85
Identity = 169/321 (52.65%), Postives = 209/321 (65.11%), Query Frame = 1 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRS------FFLL 65
           VDK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+  + N +L+         F + 
Sbjct: 17  VDKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDPNPNPSLNFNPNSVDSLFPMA 76

Query: 66  DPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDPFVFL 125
           DPF    PL F SS      +DL +   F+ ++ P ++   +N      Q + FDPF FL
Sbjct: 77  DPFSTLLPLLFGSSAASPSGIDLMSSSFFAPSMQPQARSTQQNP-----QSDAFDPFTFL 136

Query: 126 QNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNRHGTP 185
           QNHL+ +  SG  V F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTP
Sbjct: 137 QNHLQNLRSSGTHVQFVIENHPSDLGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTP 196

Query: 186 PASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLEL 245
           PASKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWL+L
Sbjct: 197 PASKSAIDGLPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLQL 256

Query: 246 HNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWP 305
           HNSCPVCRFEL TDD DYENRT+G  +QA+       G G      ++  R F + L WP
Sbjct: 257 HNSCPVCRFELPTDDPDYENRTQG--IQAS-------GDGQGSVEGQQTPR-FSIQLPWP 316

Query: 306 FGGRNDGSSSGGGNDSEGEGS 317
           F  R DGS SG G      G+
Sbjct: 317 F-RRQDGSGSGSGAPGASGGN 321

[Close]
BLAST of CmaCh04G022470 vs. NCBI nr
Match: gi|590689534|ref|XP_007043255.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 322.8 bits (826), Expect = 6.8e-85
Identity = 172/334 (51.50%), Postives = 207/334 (61.98%), Query Frame = 1 

Query: 8   KSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDT---------FSSNANLDSRS--- 67
           K FFC+QC+R V V +S S +P CP CNEGFLEEY+           S N NL+  S   
Sbjct: 19  KPFFCYQCNRTVNVTISPSSDPSCPICNEGFLEEYENPNPNQGSAFQSPNPNLNPFSEPY 78

Query: 68  FFLLDPFRDFNPLAFSSSTV-----------VDLQNPGLFSRTLSPASQLWNRNQSDSSG 127
             L DPF    PL F SS+            +D+ NP LF  T S            + G
Sbjct: 79  LSLSDPFSSLLPLLFPSSSSSTTTSSSSPASIDVHNPSLFGSTRS------------ARG 138

Query: 128 QPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLL 187
            P  FDPF F+QNHL  +  SGA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ L
Sbjct: 139 DPFAFDPFAFIQNHLNDLRSSGAHIEFVIQNNPSEPGFRLPANIGDYFIGPGLEQLIQQL 198

Query: 188 AENDPNRHGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIF 247
           AENDPNR+GTPPASKSAI+ L +V +T++ LNSE NQCAVC+D FE+G + KQMPCKH++
Sbjct: 199 AENDPNRYGTPPASKSAIDSLPSVKITKNHLNSEFNQCAVCMDEFEEGTQAKQMPCKHLY 258

Query: 248 HDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSS--- 307
           H  C+LPWLELHNSCPVCR EL TDD DYE R RG +     ++GE  G G+SG  S   
Sbjct: 259 HKDCILPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTGGGNDGEGSGGGDSGQRSAGD 318

Query: 308 -ERVERSFRVPLWWPFGGRNDGSSSGGGNDSEGE 315
              VERSFR+ L WPF  R  GS SG   ++  E
Sbjct: 319 NRTVERSFRISLPWPFRARGSGSGSGDNAETRQE 340

[Close]
BLAST of CmaCh04G022470 vs. NCBI nr
Match: gi|565480706|ref|XP_006297993.1| (hypothetical protein CARUB_v10014036mg, partial [Capsella rubella])

HSP 1 Score: 322.4 bits (825), Expect = 8.9e-85
Identity = 168/325 (51.69%), Postives = 210/325 (64.62%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA------NLDSRS 61
           +SAA DK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+  S N       N D   
Sbjct: 39  ASAAADKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDRSPNLPPNFNLNSDDSF 98

Query: 62  FFLLDPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRNQSDSSGQPEPFDP 121
           F + DPF    PL F SS      +D  +   F  ++ P ++      +    Q + FDP
Sbjct: 99  FPMADPFSTLLPLLFGSSAASPSGMDFMSSSFFGPSMQPQAR-----STQQIPQSDAFDP 158

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSLSGVSMPQNVGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ HPS +   MP N+GDYF GPGLEQLIQ LAENDPNR
Sbjct: 159 VSFLQNHLQHLRSSGTHVQFVIENHPSDAAHRMPGNLGDYFFGPGLEQLIQQLAENDPNR 218

Query: 182 HGTPPASKSAIEKLQNVTVTEDLLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+D+L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 219 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 278

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCRFEL+TDD DYE+R +G  +QA+       G G   S  ++  R F + 
Sbjct: 279 WLQLHNSCPVCRFELSTDDPDYEHRAQG--IQAS-------GDGQGSSEGQQTPRRFSIQ 338

Query: 302 LWWPFGGRNDGSSSGGGNDSEGEGS 317
           L WPF  R DGS S  G+ S   G+
Sbjct: 339 LPWPF-RRQDGSGSDPGSGSGAPGA 348

The following BLAST results are available for this feature:
BLAST of CmaCh04G022470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNG1L_ARATH1.8e-8553.44E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RING1_GOSHI2.9e-8351.37E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RHC1A_ARATH7.1e-3434.62Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RDUF1_ARATH7.6e-2830.67E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
RDUF2_ARATH2.2e-2731.05E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
BLAST of CmaCh04G022470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT93_CUCSA7.0e-13779.21Uncharacterized protein OS=Cucumis sativus GN=Csa_5G350590 PE=4 SV=1[more]
V4LVM7_EUTSA1.3e-8753.07Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021059mg PE=4 SV=1[more]
A0A061E403_THECC4.7e-8551.50RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_007702 PE=4 S... [more]
D7LAT9_ARALL4.7e-8552.65Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479... [more]
R0G651_9BRAS6.2e-8551.69Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10014036mg PE=4... [more]
BLAST of CmaCh04G022470 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.11.0e-8653.44 RING/U-box superfamily protein[more]
AT5G56340.19.2e-4048.94 RING/U-box superfamily protein[more]
AT1G55530.11.1e-3733.33 RING/U-box superfamily protein[more]
AT2G40830.24.0e-3534.62 RING-H2 finger C1A[more]
AT3G13430.11.2e-3452.56 RING/U-box superfamily protein[more]
BLAST of CmaCh04G022470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464310|ref|XP_004149872.1|1.0e-13679.21PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|567196964|ref|XP_006406436.1|1.9e-8753.07hypothetical protein EUTSA_v10021059mg [Eutrema salsugineum][more]
gi|297830662|ref|XP_002883213.1|6.8e-8552.65zinc finger family protein [Arabidopsis lyrata subsp. lyrata][more]
gi|590689534|ref|XP_007043255.1|6.8e-8551.50RING/U-box superfamily protein, putative [Theobroma cacao][more]
gi|565480706|ref|XP_006297993.1|8.9e-8551.69hypothetical protein CARUB_v10014036mg, partial [Capsella rubella][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G022470.1CmaCh04G022470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 200..243
score: 2.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 202..242
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 202..243
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 198..246
score: 6.4
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 8..296
score: 9.1
NoneNo IPR availablePANTHERPTHR22763:SF5E3 UBIQUITIN-PROTEIN LIGASE CIP8coord: 8..296
score: 9.1
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 9..42
score: 1.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 181..250
score: 7.07

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G022470Cucsa.014020Cucumber (Gy14) v1cgycmaB0604
CmaCh04G022470Csa5G350590Cucumber (Chinese Long) v2cmacuB761
CmaCh04G022470CSPI05G13810Wild cucumber (PI 183967)cmacpiB761
CmaCh04G022470CmoCh04G023480Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G022470CmoCh15G008150Cucurbita moschata (Rifu)cmacmoB693
CmaCh04G022470Lsi09G008650Bottle gourd (USVL1VR-Ls)cmalsiB622
CmaCh04G022470CsaV3_5G020690Cucumber (Chinese Long) v3cmacucB0890
CmaCh04G022470Bhi12G001017Wax gourdcmawgoB0827
CmaCh04G022470CsGy5G013660Cucumber (Gy14) v2cgybcmaB679
CmaCh04G022470Carg01418Silver-seed gourdcarcmaB1150
CmaCh04G022470Carg17779Silver-seed gourdcarcmaB0665
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G022470CmaCh15G007860Cucurbita maxima (Rimu)cmacmaB325
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G022470Cucurbita maxima (Rimu)cmacmaB538
CmaCh04G022470Cucurbita moschata (Rifu)cmacmoB744
CmaCh04G022470Melon (DHL92) v3.5.1cmameB635
CmaCh04G022470Melon (DHL92) v3.5.1cmameB651
CmaCh04G022470Watermelon (Charleston Gray)cmawcgB634
CmaCh04G022470Watermelon (Charleston Gray)cmawcgB644
CmaCh04G022470Watermelon (97103) v1cmawmB711
CmaCh04G022470Watermelon (97103) v1cmawmB726
CmaCh04G022470Cucurbita pepo (Zucchini)cmacpeB705
CmaCh04G022470Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G022470Cucurbita pepo (Zucchini)cmacpeB736
CmaCh04G022470Melon (DHL92) v3.6.1cmamedB721
CmaCh04G022470Melon (DHL92) v3.6.1cmamedB736
CmaCh04G022470Watermelon (97103) v2cmawmbB705
CmaCh04G022470Watermelon (97103) v2cmawmbB745