CmoCh04G023480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G023480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr04 : 17446828 .. 17447781 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTGGAGCCTTTGTGCCCGTTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCCCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTGTTCTCAAGAACTTTGAGTCCGGCTTCCCAGCTTTGGAATAGACATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGACATCCTTCCCGCTCTGGCGTTTCAATGCCTCAAAATCTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAGCTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCGATTGAGAAGCTTCAGAACGTGACTGTTACAGAGGAGCTTTTGAATTCGGAAATGAACCAGTGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGACGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCGGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

mRNA sequence

ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTGGAGCCTTTGTGCCCGTTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCCCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTGTTCTCAAGAACTTTGAGTCCGGCTTCCCAGCTTTGGAATAGACATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGACATCCTTCCCGCTCTGGCGTTTCAATGCCTCAAAATCTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAGCTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCGATTGAGAAGCTTCAGAACGTGACTGTTACAGAGGAGCTTTTGAATTCGGAAATGAACCAGTGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGACGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCGGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG

Coding sequence (CDS)

ATGTCCTCCGCCGCCGTCGATAAGTCCTTCTTCTGCCACCAGTGTGATCGCGACGTTACTGTTGCTGTATCCAATTCCTTGGAGCCTTTGTGCCCGTTTTGCAATGAGGGATTTCTTGAAGAGTATGATACTTTCAGCTCGAATGCCAATCTTGATTCTAGGTCATTTTTCCTTCCCGATCCTTTTCGTGATTTTAATCCCCTTGCTTTCTCTTCTTCGACGGTCGTTGATCTTCAAAACCCTGGTTTGTTCTCAAGAACTTTGAGTCCGGCTTCCCAGCTTTGGAATAGACATCAATCCGATTCGTCAGGTCAGCCGGAGCCCTTCGATCCCTTTGTTTTTCTTCAGAATCATTTACGGGGAATTTTCGACAGTGGTGCGGATGTTGTGTTTGAAATTCAGGGACATCCTTCCCGCTCTGGCGTTTCAATGCCTCAAAATCTTGGCGATTACTTCATTGGACCTGGCCTCGAGCAGCTCATTCAATTGCTGGCCGAGAATGATCCGAACCGACACGGAACTCCACCGGCCTCGAAATCGGCGATTGAGAAGCTTCAGAACGTGACTGTTACAGAGGAGCTTTTGAATTCGGAAATGAACCAGTGTGCTGTTTGCTTAGATGGGTTTGAAAAAGGTATTGAGGTTAAGCAGATGCCCTGCAAGCATATATTTCACGATTATTGTCTTTTGCCTTGGCTTGAATTGCACAATTCATGCCCTGTCTGCCGATTTGAGTTGGCAACGGACGATTCTGATTACGAGAATCGAACTCGTGGTCGCCGGGTGCAGGCTAATGAATCTAACGGAGAAGAACCAGGGTCAGGAAACAGTGGAAGTAGTAGCGAGCGCGTTGAGAGGAGCTTTAGAGTACCGCTATGGTGGCCATTTGGGGGCCGGAACGATGGGAGCGGCTCTGGTGGTGGGAATGACAGCGAAGGAGAGGGTAGCCCGTAG
Homology
[Close]
BLAST of CmoCh04G023480 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.4e-85
Identity = 170/320 (53.12%), Postives = 209/320 (65.31%), Query Frame = 1 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLD-----SRSFF-LP 65
           VDK FFC+QC++ VT+++S+S +P CP CN+GFLEEY+  + N +L+     S SFF + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 66  DPFRDFNPLAFSSSTVVD--LQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDPFVFLQN 125
           DPF    PL F SS      +    LF  ++ P ++      +  + Q + FDPF FLQN
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQAR-----STQQNPQSDAFDPFTFLQN 136

Query: 126 HLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPA 185
           HL+ +  SG    F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTPPA
Sbjct: 137 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 196

Query: 186 SKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHN 245
           SKSAI+ L  V VT+++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWLELHN
Sbjct: 197 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 256

Query: 246 SCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGN-SGSSSERVERSFRVPLWWPF 305
           SCPVCRFEL TDD DYENR++G       S G   G G+  G  + R    F + L WPF
Sbjct: 257 SCPVCRFELPTDDPDYENRSQG-------SQGSGDGQGSVEGQQTPR----FSIQLPWPF 316

Query: 306 GGRNDGSGSGGGNDSEGEGS 317
             R DGSGSG G    G G+
Sbjct: 317 -RRQDGSGSGSGAPGTGGGN 319

[Close]
BLAST of CmoCh04G023480 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.9e-83
Identity = 169/329 (51.37%), Postives = 200/329 (60.79%), Query Frame = 1 

Query: 7   DKSFFCHQCDRDVTVAVSN-SLEPLCPFCNEGFLEEYDTFSSNA-------NLDSRSFF- 66
           +K FFC+QC+R V V +S  S +P CP CNEGFLEEYD  + N        N +S  F  
Sbjct: 20  NKPFFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHD 79

Query: 67  ----LPDPFRDFNPLAF--------SSSTVVDLQNPGLFSRTLSPASQLWNRHQSDSSGQ 126
               L DPF    PL F        SSS  +D  NP L   T S              G 
Sbjct: 80  LFLTLSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRS------------GRGD 139

Query: 127 PEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLA 186
           P  FDPF F+QNHL  +  SGA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ LA
Sbjct: 140 PFAFDPFTFIQNHLNDLRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLA 199

Query: 187 ENDPNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFH 246
           ENDPNR+GTPPASKSAIE L  V +T+  LNSE NQCAVC+D FE+G E KQMPCKH++H
Sbjct: 200 ENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYH 259

Query: 247 DYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVE 306
             CLLPWLELHNSCPVCR EL TDD DYE R RG +  +  ++G+  G  + G  +  VE
Sbjct: 260 KDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDG-DNRTVE 319

Query: 307 RSFRVPLWWPFGGRNDGSGSGGGNDSEGE 315
           RSFR+ L WPF  R  G   G   ++  E
Sbjct: 320 RSFRISLPWPFQARGPGPAPGDNAETRQE 335

[Close]
BLAST of CmoCh04G023480 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-32
Identity = 107/313 (34.19%), Postives = 151/313 (48.24%), Query Frame = 1 

Query: 11  FCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRDFNPLAF 70
           +CH+C R V +   +  EP+C +C  GF+EE D   ++           D FR    +  
Sbjct: 9   WCHRCQRAVRL---HGQEPVCFYCGGGFVEELDMAQASPF---------DMFRSHRGVVE 68

Query: 71  SSST--VVDLQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDPFVFL-----QNHLRGIF 130
              T  ++D  +  + +R    +     R ++ SSG PE F     L     Q   R   
Sbjct: 69  RDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSG-PENFPGLAPLLIFGGQVPYRLTG 128

Query: 131 DSGADVVFEIQGHPSRSGVSMPQ-NLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 190
           D+  + +F   G P   G+ + + N GDYF GPGLE+L + L+     R G PPA +SAI
Sbjct: 129 DNAVEALFN-GGSP---GIGITRGNTGDYFFGPGLEELFEQLSAGT-TRRGPPPAPRSAI 188

Query: 191 EKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 250
           + L  + + +  L S  + C VC D FE G E KQMPC HI+H  C++PWL  HNSCPVC
Sbjct: 189 DALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVC 248

Query: 251 RFEL--ATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 310
           R EL  A+  S  +NRT   R   + S+     S  +G+       SF     WPF  R+
Sbjct: 249 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSF-----WPF--RS 296

Query: 311 DGSGSGGGNDSEG 314
            GS S    +  G
Sbjct: 309 SGSSSSSTQNRGG 296

[Close]
BLAST of CmoCh04G023480 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-27
Identity = 90/293 (30.72%), Postives = 143/293 (48.81%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEP--LCPFCNEGFLEEYDTFSSNANLDSRSFFLP 61
           ++  +  S++C+ C R ++V          LCP+CN GF+EE +  SSN+ + +    +P
Sbjct: 23  TTTTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIED-SSNSTVAA----IP 82

Query: 62  DPFRDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRHQSDSSG-----QPEPFDPFVF 121
               +   +  +  +++  +     + + +P   L   H     G     + E  D    
Sbjct: 83  ASTPEVRSVEETHRSIIRRRRSNRRT-SFNPVIVL---HGGGGGGAGERVENEEGDGATR 142

Query: 122 LQNHLRGIFDSGADVVFEIQGHPSRSGVS-MPQNLGDYFIGPGLEQLIQLLAE-----ND 181
            +      +D G           S SG+  +P ++ +  +G G E+L++ L++     N 
Sbjct: 143 ERRAYEFYYDDG-----------SGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNG 202

Query: 182 PNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYC 241
             R G PPASKSAIE L  V +++    +E N CAVC + FE GIE ++MPCKHIFH  C
Sbjct: 203 IGRSGNPPASKSAIESLPRVEISDCHTKAEAN-CAVCTEVFEAGIEGREMPCKHIFHGDC 262

Query: 242 LLPWLELHNSCPVCRFELATDD---SDYENRTRGRRVQANESNGEEPGSGNSG 279
           ++PWL + NSCPVCRFEL +D    S+ E    G  +      G   G  N+G
Sbjct: 263 IVPWLSIRNSCPVCRFELPSDPIQRSNEEEHAVGMTIWRLPGGGFAVGRFNAG 294

[Close]
BLAST of CmoCh04G023480 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.8e-27
Identity = 84/273 (30.77%), Postives = 134/273 (49.08%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPL----CPFCNEGFLEEYDTFSSNANLDSRSFF 61
           ++  +  S++C+ C R V+V        +    CP C+ GF+E+ +              
Sbjct: 10  TTTPITASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQIND------------- 69

Query: 62  LPDPFRDFNPLAFSSSTVVDLQNPGLFS-RTLSPASQLWNRHQSDSSGQPEPFDPFVFLQ 121
                        SSS   +L  P     R+++   +   R +   SG+   F+P + LQ
Sbjct: 70  -------------SSSAATELTIPASTEVRSINNNRRSVIRRRR--SGRRPSFNPVIVLQ 129

Query: 122 NHLRGIFDSGADV-------VFEIQ-GHPSRSGVS-MPQNLGDYFIGPGLEQLIQLLAEN 181
               G  + G +         FE      S SG+  +P ++ +  +G G E+L++ L++ 
Sbjct: 130 GGA-GEREEGEEGDAARDRRAFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQI 189

Query: 182 DPN-----RHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKH 241
           + +     R G PPASKSAIE L  V +++  + SE N CAVC + FE   E ++MPCKH
Sbjct: 190 EASATGIGRSGNPPASKSAIESLPRVEISDCHIGSEAN-CAVCTEIFETETEAREMPCKH 249

Query: 242 IFHDYCLLPWLELHNSCPVCRFELATDDSDYEN 256
           +FHD C++PWL + NSCPVCRFEL ++ +   N
Sbjct: 250 LFHDDCIVPWLSIRNSCPVCRFELPSEPNRRSN 252

[Close]
BLAST of CmoCh04G023480 vs. TrEMBL
Match: A0A0A0KT93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G350590 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 1.8e-137
Identity = 239/303 (78.88%), Postives = 258/303 (85.15%), Query Frame = 1 

Query: 3   SAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPF 62
           S+AVDK FFCHQCDR VTV+VS S +PLCP C+EGFLEEYD  +SN N D  SFFLP PF
Sbjct: 2   SSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPF 61

Query: 63  RDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDPFVFLQNHLRGI 122
           R FNPL FSSSTVVDLQNPG+FSRTL+P SQ      S SS   EP+DPFVFLQNHLR I
Sbjct: 62  RRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQ------STSSVHHEPYDPFVFLQNHLRSI 121

Query: 123 FDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 182
           F+SGADVVFEI  H S SGV MPQN+GDYFIGPGLEQLIQLLAENDPNR+GTPPASKSAI
Sbjct: 122 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 181

Query: 183 EKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 242
           EKL  +TVTE+LLNSEMNQCAVC+D F KGI VKQMPCKH+FHDYCLLPWLELHNSCP+C
Sbjct: 182 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 241

Query: 243 RFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDG 302
           RFEL TDDSDYENRTRG R+Q NES+GEE GSG+SGSS  RVER FRVPLWWPFG RNDG
Sbjct: 242 RFELPTDDSDYENRTRGNRMQGNESSGEESGSGSSGSSMRRVERRFRVPLWWPFGSRNDG 298

Query: 303 SGS 306
           S S
Sbjct: 302 SDS 298

[Close]
BLAST of CmoCh04G023480 vs. TrEMBL
Match: V4LVM7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021059mg PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 3.2e-89
Identity = 177/327 (54.13%), Postives = 220/327 (67.28%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA--NLDSRSFF-L 61
           ++ A+DK FFC+QCDR VTV+VS++++P CP CN GFLEEY+  + N   NL+S  FF +
Sbjct: 11  TAPAIDKMFFCYQCDRTVTVSVSSTVDPFCPRCNGGFLEEYEEPNPNPAPNLNSGGFFPM 70

Query: 62  PDPFRDFNPLAFS-----SSTVVDLQNPGLFSRTLSPAS--QLWNRHQSDSSGQPEPFDP 121
            DPF    PL F+     SS+V+D  NP  F  ++ P S  Q   +HQ  +  Q E FDP
Sbjct: 71  ADPFSTLLPLLFAPPGTNSSSVMDFINPSFFGPSMQPRSTQQPQQQHQHQNLPQGEAFDP 130

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ +PS     MP NLGDYF GPGLEQLIQ LAENDPNR
Sbjct: 131 ITFLQNHLQHLRSSGTHVQFVIESNPSDPSNRMPGNLGDYFFGPGLEQLIQQLAENDPNR 190

Query: 182 HGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 191 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 250

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCR+EL TDD DYENR +G+        G+  G G      ++  RSF + 
Sbjct: 251 WLQLHNSCPVCRYELPTDDPDYENRAQGQ-------GGQSSGDGQGSVEGQQTPRSFSIQ 310

Query: 302 LWWPFGGRNDGSGS--GGGNDSEGEGS 317
           L WPF  R DGSGS  G G+ + G G+
Sbjct: 311 LPWPF-RRRDGSGSEPGSGSGAPGTGA 329

[Close]
BLAST of CmoCh04G023480 vs. TrEMBL
Match: R0G651_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10014036mg PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 5.6e-86
Identity = 171/325 (52.62%), Postives = 213/325 (65.54%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA----NLDSRSFF 61
           +SAA DK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+  S N     NL+S   F
Sbjct: 39  ASAAADKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDRSPNLPPNFNLNSDDSF 98

Query: 62  LP--DPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDP 121
            P  DPF    PL F SS      +D  +   F  ++ P ++      +    Q + FDP
Sbjct: 99  FPMADPFSTLLPLLFGSSAASPSGMDFMSSSFFGPSMQPQAR-----STQQIPQSDAFDP 158

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ HPS +   MP NLGDYF GPGLEQLIQ LAENDPNR
Sbjct: 159 VSFLQNHLQHLRSSGTHVQFVIENHPSDAAHRMPGNLGDYFFGPGLEQLIQQLAENDPNR 218

Query: 182 HGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 219 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 278

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCRFEL+TDD DYE+R +G  +QA+       G G   S  ++  R F + 
Sbjct: 279 WLQLHNSCPVCRFELSTDDPDYEHRAQG--IQAS-------GDGQGSSEGQQTPRRFSIQ 338

Query: 302 LWWPFGGRNDGSGSGGGNDSEGEGS 317
           L WPF  R DGSGS  G+ S   G+
Sbjct: 339 LPWPF-RRQDGSGSDPGSGSGAPGA 348

[Close]
BLAST of CmoCh04G023480 vs. TrEMBL
Match: A0A061E403_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_007702 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 7.3e-86
Identity = 173/334 (51.80%), Postives = 207/334 (61.98%), Query Frame = 1 

Query: 8   KSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDT---------FSSNANLDSRS--- 67
           K FFC+QC+R V V +S S +P CP CNEGFLEEY+           S N NL+  S   
Sbjct: 19  KPFFCYQCNRTVNVTISPSSDPSCPICNEGFLEEYENPNPNQGSAFQSPNPNLNPFSEPY 78

Query: 68  FFLPDPFRDFNPLAFSSSTV-----------VDLQNPGLFSRTLSPASQLWNRHQSDSSG 127
             L DPF    PL F SS+            +D+ NP LF  T S            + G
Sbjct: 79  LSLSDPFSSLLPLLFPSSSSSTTTSSSSPASIDVHNPSLFGSTRS------------ARG 138

Query: 128 QPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLL 187
            P  FDPF F+QNHL  +  SGA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ L
Sbjct: 139 DPFAFDPFAFIQNHLNDLRSSGAHIEFVIQNNPSEPGFRLPANIGDYFIGPGLEQLIQQL 198

Query: 188 AENDPNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIF 247
           AENDPNR+GTPPASKSAI+ L +V +T+  LNSE NQCAVC+D FE+G + KQMPCKH++
Sbjct: 199 AENDPNRYGTPPASKSAIDSLPSVKITKNHLNSEFNQCAVCMDEFEEGTQAKQMPCKHLY 258

Query: 248 HDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSS--- 307
           H  C+LPWLELHNSCPVCR EL TDD DYE R RG +     ++GE  G G+SG  S   
Sbjct: 259 HKDCILPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTGGGNDGEGSGGGDSGQRSAGD 318

Query: 308 -ERVERSFRVPLWWPFGGRNDGSGSGGGNDSEGE 315
              VERSFR+ L WPF  R  GSGSG   ++  E
Sbjct: 319 NRTVERSFRISLPWPFRARGSGSGSGDNAETRQE 340

[Close]
BLAST of CmoCh04G023480 vs. TrEMBL
Match: A0A0D2VAA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G068800 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 2.1e-85
Identity = 168/329 (51.06%), Postives = 203/329 (61.70%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFS-SNANLDSRSFFLP- 61
           +  A +K FFC+QC+R VTV +  S +P CP CNEGFLEEY+  S  N N +S     P 
Sbjct: 16  TDGATNKPFFCYQCNRTVTVTIYPSADPSCPLCNEGFLEEYENPSFENPNPNSNPLSEPF 75

Query: 62  ----DPFRDFNPLAFSSSTV----------VDLQNPGLFSRTLSPASQLWNRHQSDSSGQ 121
               DPF    PL F SS+           +DL NP  F  T S              G 
Sbjct: 76  LSVSDPFSSLLPLLFPSSSSTTSSSPSPASIDLHNPNSFGSTRS------------GRGD 135

Query: 122 PEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLA 181
           P  FDPF F+QNHL  +   GA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ LA
Sbjct: 136 PFAFDPFTFIQNHLNDLRSRGAQIEFVIQNNPSEPGFRLPANIGDYFIGPGLEQLIQQLA 195

Query: 182 ENDPNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFH 241
           ENDPNR+GTPPASKSAI+ L +V + +  LNSE NQCAVC+D FE+G E KQMPCKH++H
Sbjct: 196 ENDPNRYGTPPASKSAIDALPSVKIAKNNLNSEFNQCAVCMDEFEEGAEAKQMPCKHLYH 255

Query: 242 DYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSER-- 301
             C+LPWLELHNSCPVCR EL TDD DYE R RG +     ++G+  G  N   S +   
Sbjct: 256 KDCILPWLELHNSCPVCRHELPTDDPDYERRVRGAQATGGGNDGDSSGGDNEQRSGDNRT 315

Query: 302 VERSFRVPLWWPFGGRNDGSGSGGGNDSE 313
            ERSFR+ L WPF  R  GSGSG G++ +
Sbjct: 316 AERSFRISLPWPFRARGSGSGSGSGDNPQ 332

[Close]
BLAST of CmoCh04G023480 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 317.8 bits (813), Expect = 7.7e-87
Identity = 170/320 (53.12%), Postives = 209/320 (65.31%), Query Frame = 1 

Query: 6   VDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLD-----SRSFF-LP 65
           VDK FFC+QC++ VT+++S+S +P CP CN+GFLEEY+  + N +L+     S SFF + 
Sbjct: 17  VDKMFFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMA 76

Query: 66  DPFRDFNPLAFSSSTVVD--LQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDPFVFLQN 125
           DPF    PL F SS      +    LF  ++ P ++      +  + Q + FDPF FLQN
Sbjct: 77  DPFSTLLPLIFGSSAAAPSGMDFMSLFGPSMQPQAR-----STQQNPQSDAFDPFTFLQN 136

Query: 126 HLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPA 185
           HL+ +  SG    F I+ HPS  G  MP N GDYF GPGLEQLIQ LAENDPNR+GTPPA
Sbjct: 137 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 196

Query: 186 SKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHN 245
           SKSAI+ L  V VT+++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLPWLELHN
Sbjct: 197 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 256

Query: 246 SCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGN-SGSSSERVERSFRVPLWWPF 305
           SCPVCRFEL TDD DYENR++G       S G   G G+  G  + R    F + L WPF
Sbjct: 257 SCPVCRFELPTDDPDYENRSQG-------SQGSGDGQGSVEGQQTPR----FSIQLPWPF 316

Query: 306 GGRNDGSGSGGGNDSEGEGS 317
             R DGSGSG G    G G+
Sbjct: 317 -RRQDGSGSGSGAPGTGGGN 319

[Close]
BLAST of CmoCh04G023480 vs. TAIR10
Match: AT5G56340.1 (AT5G56340.1 RING/U-box superfamily protein)

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-38
Identity = 91/188 (48.40%), Postives = 109/188 (57.98%), Query Frame = 1 

Query: 134 QGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEE 193
           Q HPS +      +LGDYFIGPGL+ L+Q LAENDPNR GTPPA K A+E L  V + E 
Sbjct: 203 QNHPSLT------SLGDYFIGPGLDLLLQHLAENDPNRQGTPPARKEAVEALPTVKIMEP 262

Query: 194 LLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATD---- 253
           L      QC+VCLD FEKG E K+MPCKH FH  C++PWLELH+SCPVCRFEL +     
Sbjct: 263 L------QCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDD 322

Query: 254 -----DSDYENRTRGRRVQANESNGEEPGSGNSGSSSE-RVERSFRVPLWWPFGGRNDGS 312
                DS+   RTR  R  +N +  E  G+ + G   E R     R    WPF G    S
Sbjct: 323 DETKTDSERVLRTRNVRETSNGNVVENVGNADRGREDEVRSGNGRRFSFPWPFSGLFSSS 378

[Close]
BLAST of CmoCh04G023480 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-38
Identity = 116/346 (33.53%), Postives = 156/346 (45.09%), Query Frame = 1 

Query: 5   AVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRD 64
           AV   ++CH C + V   +   ++  CPFC  GF+EE +    + + D      P   R 
Sbjct: 4   AVVTRYWCHMCSQTVNPVMEAEIK--CPFCQSGFVEEMEDDDDHDSSD------PADVRA 63

Query: 65  FNPLAFSSSTVVDLQNPGLFSR---TLSPASQLWNRHQSDSSGQPEPFDPFVFLQNHLRG 124
            N L   +  +++L N  +  R   ++       N  Q++++      D    LQ  LR 
Sbjct: 64  NNSL--WAPILMELMNDPVRRRRNQSVESVEDNQNEVQTENNEDDGENDLDWQLQEILRR 123

Query: 125 IFDSGADVVFEIQGHPSRSGVSMPQ----------------------------------- 184
                A V+  +QG   R+G+S+                                     
Sbjct: 124 RRRHSAAVLQLLQG--IRAGLSVESESTGNGGNNPGRVILINTSNQTITVQNSADMDSVP 183

Query: 185 --NLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAV 244
             +LGDYFIGPG E L+Q LAENDPNR+GTPPA K A+E L  V + E L      QC+V
Sbjct: 184 AGSLGDYFIGPGFEMLLQRLAENDPNRYGTPPAKKEAVEALATVKIEETL------QCSV 243

Query: 245 CLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRTR------ 304
           CLD FE G E K MPC H FH  CLLPWLELH+SCPVCR++L  D++  ++ T       
Sbjct: 244 CLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADEAKTDSVTTTSDNNG 303

[Close]
BLAST of CmoCh04G023480 vs. TAIR10
Match: AT3G13430.1 (AT3G13430.1 RING/U-box superfamily protein)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-37
Identity = 114/319 (35.74%), Postives = 150/319 (47.02%), Query Frame = 1 

Query: 5   AVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRD 64
           A + S++CH C R V   + + +   C FC  GF+EE D    +   DS   + P     
Sbjct: 4   ASETSYWCHMCSRSVIPLIQDEIIK-CNFCQSGFVEEMDNNDDHQAADS--LWTPILMEM 63

Query: 65  FNPLAFSSSTVV--------------------DLQNPGLFSRT--LSPASQLWNRHQSDS 124
            N      ST                      D  N G    T  L    ++  RH +  
Sbjct: 64  MNNNHDQHSTNQEDSESILEDEDEDEDDGDDGDQNNDGEIDITHQLEEIRRIRTRHSTAI 123

Query: 125 SGQPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGV--------SMPQ-NLGDYFI 184
               +     + +++         +++V  I     R  V        S+P  +LGDYFI
Sbjct: 124 VNLLQGIRAGLLIESENNEDNPDNSELVVLINSFNQRIRVHQDSVDTTSVPSGSLGDYFI 183

Query: 185 GPGLEQLIQLLAEND-PNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKG 244
           GPG E L+Q LAEND  NR+GTPPA+K A+E L  V + + LL     QC+VCLD FE G
Sbjct: 184 GPGFETLLQRLAENDLNNRYGTPPATKEAVEALAMVKIEDSLL-----QCSVCLDDFEIG 243

Query: 245 IEVKQMPCKHIFHDYCLLPWLELHNSCPVCRFELATDDSDYENRT---RGRRVQANE--- 281
           +E K+MPCKH FH  CLLPWLELH+SCPVCR+ L T D D E +T     R    NE   
Sbjct: 244 MEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDD-EPKTDAETSRNDDNNEDIS 303

[Close]
BLAST of CmoCh04G023480 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 142.1 bits (357), Expect = 5.8e-34
Identity = 107/313 (34.19%), Postives = 151/313 (48.24%), Query Frame = 1 

Query: 11  FCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPFRDFNPLAF 70
           +CH+C R V +   +  EP+C +C  GF+EE D   ++           D FR    +  
Sbjct: 9   WCHRCQRAVRL---HGQEPVCFYCGGGFVEELDMAQASPF---------DMFRSHRGVVE 68

Query: 71  SSST--VVDLQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDPFVFL-----QNHLRGIF 130
              T  ++D  +  + +R    +     R ++ SSG PE F     L     Q   R   
Sbjct: 69  RDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSG-PENFPGLAPLLIFGGQVPYRLTG 128

Query: 131 DSGADVVFEIQGHPSRSGVSMPQ-NLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 190
           D+  + +F   G P   G+ + + N GDYF GPGLE+L + L+     R G PPA +SAI
Sbjct: 129 DNAVEALFN-GGSP---GIGITRGNTGDYFFGPGLEELFEQLSAGT-TRRGPPPAPRSAI 188

Query: 191 EKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 250
           + L  + + +  L S  + C VC D FE G E KQMPC HI+H  C++PWL  HNSCPVC
Sbjct: 189 DALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVC 248

Query: 251 RFEL--ATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRN 310
           R EL  A+  S  +NRT   R   + S+     S  +G+       SF     WPF  R+
Sbjct: 249 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSF-----WPF--RS 296

Query: 311 DGSGSGGGNDSEG 314
            GS S    +  G
Sbjct: 309 SGSSSSSTQNRGG 296

[Close]
BLAST of CmoCh04G023480 vs. NCBI nr
Match: gi|449464310|ref|XP_004149872.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 496.9 bits (1278), Expect = 2.6e-137
Identity = 239/303 (78.88%), Postives = 258/303 (85.15%), Query Frame = 1 

Query: 3   SAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNANLDSRSFFLPDPF 62
           S+AVDK FFCHQCDR VTV+VS S +PLCP C+EGFLEEYD  +SN N D  SFFLP PF
Sbjct: 2   SSAVDKPFFCHQCDRAVTVSVSISSDPLCPLCHEGFLEEYDNSNSNLNFDPTSFFLPQPF 61

Query: 63  RDFNPLAFSSSTVVDLQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDPFVFLQNHLRGI 122
           R FNPL FSSSTVVDLQNPG+FSRTL+P SQ      S SS   EP+DPFVFLQNHLR I
Sbjct: 62  RRFNPLVFSSSTVVDLQNPGIFSRTLAPPSQ------STSSVHHEPYDPFVFLQNHLRSI 121

Query: 123 FDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNRHGTPPASKSAI 182
           F+SGADVVFEI  H S SGV MPQN+GDYFIGPGLEQLIQLLAENDPNR+GTPPASKSAI
Sbjct: 122 FESGADVVFEIPRHSSHSGVPMPQNVGDYFIGPGLEQLIQLLAENDPNRYGTPPASKSAI 181

Query: 183 EKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLPWLELHNSCPVC 242
           EKL  +TVTE+LLNSEMNQCAVC+D F KGI VKQMPCKH+FHDYCLLPWLELHNSCP+C
Sbjct: 182 EKLSTITVTEDLLNSEMNQCAVCIDDFGKGIVVKQMPCKHVFHDYCLLPWLELHNSCPIC 241

Query: 243 RFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVPLWWPFGGRNDG 302
           RFEL TDDSDYENRTRG R+Q NES+GEE GSG+SGSS  RVER FRVPLWWPFG RNDG
Sbjct: 242 RFELPTDDSDYENRTRGNRMQGNESSGEESGSGSSGSSMRRVERRFRVPLWWPFGSRNDG 298

Query: 303 SGS 306
           S S
Sbjct: 302 SDS 298

[Close]
BLAST of CmoCh04G023480 vs. NCBI nr
Match: gi|567196964|ref|XP_006406436.1| (hypothetical protein EUTSA_v10021059mg [Eutrema salsugineum])

HSP 1 Score: 336.7 bits (862), Expect = 4.5e-89
Identity = 177/327 (54.13%), Postives = 220/327 (67.28%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA--NLDSRSFF-L 61
           ++ A+DK FFC+QCDR VTV+VS++++P CP CN GFLEEY+  + N   NL+S  FF +
Sbjct: 11  TAPAIDKMFFCYQCDRTVTVSVSSTVDPFCPRCNGGFLEEYEEPNPNPAPNLNSGGFFPM 70

Query: 62  PDPFRDFNPLAFS-----SSTVVDLQNPGLFSRTLSPAS--QLWNRHQSDSSGQPEPFDP 121
            DPF    PL F+     SS+V+D  NP  F  ++ P S  Q   +HQ  +  Q E FDP
Sbjct: 71  ADPFSTLLPLLFAPPGTNSSSVMDFINPSFFGPSMQPRSTQQPQQQHQHQNLPQGEAFDP 130

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ +PS     MP NLGDYF GPGLEQLIQ LAENDPNR
Sbjct: 131 ITFLQNHLQHLRSSGTHVQFVIESNPSDPSNRMPGNLGDYFFGPGLEQLIQQLAENDPNR 190

Query: 182 HGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 191 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 250

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCR+EL TDD DYENR +G+        G+  G G      ++  RSF + 
Sbjct: 251 WLQLHNSCPVCRYELPTDDPDYENRAQGQ-------GGQSSGDGQGSVEGQQTPRSFSIQ 310

Query: 302 LWWPFGGRNDGSGS--GGGNDSEGEGS 317
           L WPF  R DGSGS  G G+ + G G+
Sbjct: 311 LPWPF-RRRDGSGSEPGSGSGAPGTGA 329

[Close]
BLAST of CmoCh04G023480 vs. NCBI nr
Match: gi|565480706|ref|XP_006297993.1| (hypothetical protein CARUB_v10014036mg, partial [Capsella rubella])

HSP 1 Score: 325.9 bits (834), Expect = 8.0e-86
Identity = 171/325 (52.62%), Postives = 213/325 (65.54%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFSSNA----NLDSRSFF 61
           +SAA DK FFC+QC+R VT+++S+S +P CP CN+GFLEEY+  S N     NL+S   F
Sbjct: 39  ASAAADKMFFCYQCNRTVTISISSSADPFCPICNQGFLEEYEDRSPNLPPNFNLNSDDSF 98

Query: 62  LP--DPFRDFNPLAFSSSTV----VDLQNPGLFSRTLSPASQLWNRHQSDSSGQPEPFDP 121
            P  DPF    PL F SS      +D  +   F  ++ P ++      +    Q + FDP
Sbjct: 99  FPMADPFSTLLPLLFGSSAASPSGMDFMSSSFFGPSMQPQAR-----STQQIPQSDAFDP 158

Query: 122 FVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLAENDPNR 181
             FLQNHL+ +  SG  V F I+ HPS +   MP NLGDYF GPGLEQLIQ LAENDPNR
Sbjct: 159 VSFLQNHLQHLRSSGTHVQFVIENHPSDAAHRMPGNLGDYFFGPGLEQLIQQLAENDPNR 218

Query: 182 HGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFHDYCLLP 241
           +GTPPASKSAI+ L  V VT+++L SEMNQCAVC+D FE G +VKQMPCKH+FH  CLLP
Sbjct: 219 YGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 278

Query: 242 WLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSERVERSFRVP 301
           WL+LHNSCPVCRFEL+TDD DYE+R +G  +QA+       G G   S  ++  R F + 
Sbjct: 279 WLQLHNSCPVCRFELSTDDPDYEHRAQG--IQAS-------GDGQGSSEGQQTPRRFSIQ 338

Query: 302 LWWPFGGRNDGSGSGGGNDSEGEGS 317
           L WPF  R DGSGS  G+ S   G+
Sbjct: 339 LPWPF-RRQDGSGSDPGSGSGAPGA 348

[Close]
BLAST of CmoCh04G023480 vs. NCBI nr
Match: gi|590689534|ref|XP_007043255.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 325.5 bits (833), Expect = 1.0e-85
Identity = 173/334 (51.80%), Postives = 207/334 (61.98%), Query Frame = 1 

Query: 8   KSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDT---------FSSNANLDSRS--- 67
           K FFC+QC+R V V +S S +P CP CNEGFLEEY+           S N NL+  S   
Sbjct: 19  KPFFCYQCNRTVNVTISPSSDPSCPICNEGFLEEYENPNPNQGSAFQSPNPNLNPFSEPY 78

Query: 68  FFLPDPFRDFNPLAFSSSTV-----------VDLQNPGLFSRTLSPASQLWNRHQSDSSG 127
             L DPF    PL F SS+            +D+ NP LF  T S            + G
Sbjct: 79  LSLSDPFSSLLPLLFPSSSSSTTTSSSSPASIDVHNPSLFGSTRS------------ARG 138

Query: 128 QPEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLL 187
            P  FDPF F+QNHL  +  SGA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ L
Sbjct: 139 DPFAFDPFAFIQNHLNDLRSSGAHIEFVIQNNPSEPGFRLPANIGDYFIGPGLEQLIQQL 198

Query: 188 AENDPNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIF 247
           AENDPNR+GTPPASKSAI+ L +V +T+  LNSE NQCAVC+D FE+G + KQMPCKH++
Sbjct: 199 AENDPNRYGTPPASKSAIDSLPSVKITKNHLNSEFNQCAVCMDEFEEGTQAKQMPCKHLY 258

Query: 248 HDYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSS--- 307
           H  C+LPWLELHNSCPVCR EL TDD DYE R RG +     ++GE  G G+SG  S   
Sbjct: 259 HKDCILPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTGGGNDGEGSGGGDSGQRSAGD 318

Query: 308 -ERVERSFRVPLWWPFGGRNDGSGSGGGNDSEGE 315
              VERSFR+ L WPF  R  GSGSG   ++  E
Sbjct: 319 NRTVERSFRISLPWPFRARGSGSGSGDNAETRQE 340

[Close]
BLAST of CmoCh04G023480 vs. NCBI nr
Match: gi|823261263|ref|XP_012463361.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii])

HSP 1 Score: 323.9 bits (829), Expect = 3.0e-85
Identity = 168/329 (51.06%), Postives = 203/329 (61.70%), Query Frame = 1 

Query: 2   SSAAVDKSFFCHQCDRDVTVAVSNSLEPLCPFCNEGFLEEYDTFS-SNANLDSRSFFLP- 61
           +  A +K FFC+QC+R VTV +  S +P CP CNEGFLEEY+  S  N N +S     P 
Sbjct: 16  TDGATNKPFFCYQCNRTVTVTIYPSADPSCPLCNEGFLEEYENPSFENPNPNSNPLSEPF 75

Query: 62  ----DPFRDFNPLAFSSSTV----------VDLQNPGLFSRTLSPASQLWNRHQSDSSGQ 121
               DPF    PL F SS+           +DL NP  F  T S              G 
Sbjct: 76  LSVSDPFSSLLPLLFPSSSSTTSSSPSPASIDLHNPNSFGSTRS------------GRGD 135

Query: 122 PEPFDPFVFLQNHLRGIFDSGADVVFEIQGHPSRSGVSMPQNLGDYFIGPGLEQLIQLLA 181
           P  FDPF F+QNHL  +   GA + F IQ +PS  G  +P N+GDYFIGPGLEQLIQ LA
Sbjct: 136 PFAFDPFTFIQNHLNDLRSRGAQIEFVIQNNPSEPGFRLPANIGDYFIGPGLEQLIQQLA 195

Query: 182 ENDPNRHGTPPASKSAIEKLQNVTVTEELLNSEMNQCAVCLDGFEKGIEVKQMPCKHIFH 241
           ENDPNR+GTPPASKSAI+ L +V + +  LNSE NQCAVC+D FE+G E KQMPCKH++H
Sbjct: 196 ENDPNRYGTPPASKSAIDALPSVKIAKNNLNSEFNQCAVCMDEFEEGAEAKQMPCKHLYH 255

Query: 242 DYCLLPWLELHNSCPVCRFELATDDSDYENRTRGRRVQANESNGEEPGSGNSGSSSER-- 301
             C+LPWLELHNSCPVCR EL TDD DYE R RG +     ++G+  G  N   S +   
Sbjct: 256 KDCILPWLELHNSCPVCRHELPTDDPDYERRVRGAQATGGGNDGDSSGGDNEQRSGDNRT 315

Query: 302 VERSFRVPLWWPFGGRNDGSGSGGGNDSE 313
            ERSFR+ L WPF  R  GSGSG G++ +
Sbjct: 316 AERSFRISLPWPFRARGSGSGSGSGDNPQ 332

The following BLAST results are available for this feature:
BLAST of CmoCh04G023480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNG1L_ARATH1.4e-8553.13E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RING1_GOSHI2.9e-8351.37E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RHC1A_ARATH1.0e-3234.19Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RDUF1_ARATH1.3e-2730.72E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
RDUF2_ARATH3.8e-2730.77E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
BLAST of CmoCh04G023480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT93_CUCSA1.8e-13778.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G350590 PE=4 SV=1[more]
V4LVM7_EUTSA3.2e-8954.13Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021059mg PE=4 SV=1[more]
R0G651_9BRAS5.6e-8652.62Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10014036mg PE=4... [more]
A0A061E403_THECC7.3e-8651.80RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_007702 PE=4 S... [more]
A0A0D2VAA1_GOSRA2.1e-8551.06Uncharacterized protein OS=Gossypium raimondii GN=B456_013G068800 PE=4 SV=1[more]
BLAST of CmoCh04G023480 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.17.7e-8753.13 RING/U-box superfamily protein[more]
AT5G56340.11.0e-3848.40 RING/U-box superfamily protein[more]
AT1G55530.12.3e-3833.53 RING/U-box superfamily protein[more]
AT3G13430.11.9e-3735.74 RING/U-box superfamily protein[more]
AT2G40830.25.8e-3434.19 RING-H2 finger C1A[more]
BLAST of CmoCh04G023480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464310|ref|XP_004149872.1|2.6e-13778.88PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|567196964|ref|XP_006406436.1|4.5e-8954.13hypothetical protein EUTSA_v10021059mg [Eutrema salsugineum][more]
gi|565480706|ref|XP_006297993.1|8.0e-8652.62hypothetical protein CARUB_v10014036mg, partial [Capsella rubella][more]
gi|590689534|ref|XP_007043255.1|1.0e-8551.80RING/U-box superfamily protein, putative [Theobroma cacao][more]
gi|823261263|ref|XP_012463361.1|3.0e-8551.06PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G023480.1CmoCh04G023480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 200..243
score: 2.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 202..242
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 202..243
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 198..246
score: 6.4
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 8..296
score: 2.1
NoneNo IPR availablePANTHERPTHR22763:SF5E3 UBIQUITIN-PROTEIN LIGASE CIP8coord: 8..296
score: 2.1
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 9..42
score: 1.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 181..250
score: 4.24

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G023480Cucsa.014020Cucumber (Gy14) v1cgycmoB0606
CmoCh04G023480CmaCh15G007860Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G023480CmaCh04G022470Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G023480Csa5G350590Cucumber (Chinese Long) v2cmocuB748
CmoCh04G023480CSPI05G13810Wild cucumber (PI 183967)cmocpiB751
CmoCh04G023480Lsi09G008650Bottle gourd (USVL1VR-Ls)cmolsiB610
CmoCh04G023480CsaV3_5G020690Cucumber (Chinese Long) v3cmocucB0880
CmoCh04G023480Bhi12G001017Wax gourdcmowgoB0822
CmoCh04G023480CsGy5G013660Cucumber (Gy14) v2cgybcmoB657
CmoCh04G023480Carg01418Silver-seed gourdcarcmoB1121
CmoCh04G023480Carg17779Silver-seed gourdcarcmoB0648
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G023480CmoCh15G008150Cucurbita moschata (Rifu)cmocmoB262
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G023480Cucurbita moschata (Rifu)cmocmoB470
CmoCh04G023480Cucurbita maxima (Rimu)cmacmoB745
CmoCh04G023480Melon (DHL92) v3.5.1cmomeB625
CmoCh04G023480Melon (DHL92) v3.5.1cmomeB643
CmoCh04G023480Watermelon (Charleston Gray)cmowcgB636
CmoCh04G023480Watermelon (Charleston Gray)cmowcgB646
CmoCh04G023480Watermelon (97103) v1cmowmB707
CmoCh04G023480Watermelon (97103) v1cmowmB722
CmoCh04G023480Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G023480Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G023480Cucurbita pepo (Zucchini)cmocpeB690
CmoCh04G023480Melon (DHL92) v3.6.1cmomedB714
CmoCh04G023480Melon (DHL92) v3.6.1cmomedB732
CmoCh04G023480Watermelon (97103) v2cmowmbB676
CmoCh04G023480Watermelon (97103) v2cmowmbB718