Csa4G279890 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G279890
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	cDNA clone:001-026-G04, full insert sequence; contains IPR021495 (Protein of unknown function DUF3148)
Location	Chr4 : 10796526 .. 10797426 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACATTGGTGATAAGATACGATTCCAATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGTCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGGTGATTACCCAATTGCCACTCGTCCTCTGTCTTTAACATTTCATCGAACACATTACGTGCATCGTTTTTCTTTTTTTGGTAACTAAGTACTGTCTGTTCCGTTGCTTTATCGTGTGTGATTGAACAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAACTTGTCCGGAGAGGCTTTCGATTTGAAGGTTCCGAGCTTACAAATTCACCTTTCATGGCGATTTCGTTGGAATGCGGCGTGTGTTTGAATCCATTTGTAGGAAATCATTCCGTTATCGTTGCATGTTGTTCAGATCACCCTCCATGTCTCTATCTTGATGCAGCAGATCGAATGCAGCTTGATTAGCCATGAATTTAGGAGTCTTATGTGCATAGTTTATTCCTTACGAATAAATTTTCGATTCTATAACATATATTTTATTGCAAATTTGTTATGCATCTTCGTGGAATTCACGATGAAACTCGAACCCTCAATCCCGTTTGATGGTTTCTTTGTTGC

mRNA sequence

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGTCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

Coding sequence (CDS)

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGTCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

Protein sequence

MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ*

Homology

[Close]

BLAST of Csa4G279890 vs. TrEMBL
Match: A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.4e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of Csa4G279890 vs. TrEMBL
Match: M5WDH9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013250mg PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.8e-33
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 1


Query: 25  FNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVP 84
           FN SNT   RS     VKC S+  PA G  S  +  KLEIGSP+IV+EAP+MIKTAASVP
Sbjct: 24  FNTSNTYK-RSPNAVSVKCASTEPPAAGAGSAGRKSKLEIGSPIIVVEAPRMIKTAASVP 83

Query: 85  CLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELD 133
           CLRVNSG++ PGDVGRIVSRKP DVWAVRL +GTYLIDG+YF+ LEL+
Sbjct: 84  CLRVNSGLVKPGDVGRIVSRKPMDVWAVRLSIGTYLIDGKYFKPLELE 130

[Close]

BLAST of Csa4G279890 vs. TrEMBL
Match: W9RP34_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 21  SISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTA 80
           ++SSF+  N    RS     +KCESSA       S  +  KLEIGSP++V+EAPKMIKTA
Sbjct: 22  TLSSFHTKNG---RSSSIFSIKCESSAD----NESAKRLSKLEIGSPIVVVEAPKMIKTA 81

Query: 81  ASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           ASVPCLRVNSG++NPGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ L++D+
Sbjct: 82  ASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKPLDVDK 127

[Close]

BLAST of Csa4G279890 vs. TrEMBL
Match: B9SNJ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737540 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 79/132 (59.85%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPP-KS 60
           MA+ L PT+    P  ++  SI  F  +N  T      +  KC+S  S ++  TSPP K 
Sbjct: 1   MASSLTPTSTI--PYTKLHNSILQFTNANFRTPSFSVAT--KCQSQESSSE--TSPPAKI 60

Query: 61  QKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTY 120
            KL IGSP++V+EAPKMIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTY
Sbjct: 61  TKLAIGSPIVVVEAPKMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRALEL 132
           LIDG+YF+ LEL
Sbjct: 121 LIDGKYFKPLEL 126

[Close]

BLAST of Csa4G279890 vs. TrEMBL
Match: A0A067L6S1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23880 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-31
Identity = 73/120 (60.83%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 14  PNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEA 73
           P  ++  SI  F  +N+ +       + KCES  S      SP K +KLEIGSP++VIEA
Sbjct: 12  PCTKLHNSILQF--TNSSSRNQNFNFVTKCESKES------SPEKFKKLEIGSPIVVIEA 71

Query: 74  PKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 133
           PKMIKTA SVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ LEL +
Sbjct: 72  PKMIKTATSVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKPLELQE 123

[Close]

BLAST of Csa4G279890 vs. TAIR10
Match: AT5G20935.1 (AT5G20935.1 unknown protein)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-31
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 38  RSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGD 97
           R  V+C   A+ A     P    KL++GSP+I++EAPK+IKTAAS+PCLR NSG++ PGD
Sbjct: 14  RVSVRCCEIANEA-----PRPKSKLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGD 73

Query: 98  VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           VGRIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 74  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

[Close]

BLAST of Csa4G279890 vs. NCBI nr
Match: gi|449448996|ref|XP_004142251.1| (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of Csa4G279890 vs. NCBI nr
Match: gi|659097820|ref|XP_008449832.1| (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 7.1e-60
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
           MAA   PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQT P KSQ
Sbjct: 1   MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of Csa4G279890 vs. NCBI nr
Match: gi|645218453|ref|XP_008230685.1| (PREDICTED: uncharacterized protein LOC103329930 [Prunus mume])

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-35
Identity = 82/133 (61.65%), Postives = 99/133 (74.44%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSI-VKCESSASPADGQTSPPKS 60
           MA  L  TT  +   +R  +S+  FN SNT   R  P ++ VKC S+  PA G  S  + 
Sbjct: 1   MALSLSSTTAITCSKLRDNSSLQ-FNTSNTY--RRSPNAVSVKCASTEPPAAGAGSAGRK 60

Query: 61  QKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTY 120
            KLEIGSP+IV+EAP+MIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTY
Sbjct: 61  SKLEIGSPIIVVEAPRMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRALELD 133
           LIDG+YF+ LE+D
Sbjct: 121 LIDGKYFKPLEID 130

[Close]

BLAST of Csa4G279890 vs. NCBI nr
Match: gi|595830802|ref|XP_007206139.1| (hypothetical protein PRUPE_ppa013250mg [Prunus persica])

HSP 1 Score: 148.3 bits (373), Expect = 9.7e-33
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 1


Query: 25  FNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVP 84
           FN SNT   RS     VKC S+  PA G  S  +  KLEIGSP+IV+EAP+MIKTAASVP
Sbjct: 24  FNTSNTYK-RSPNAVSVKCASTEPPAAGAGSAGRKSKLEIGSPIIVVEAPRMIKTAASVP 83

Query: 85  CLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELD 133
           CLRVNSG++ PGDVGRIVSRKP DVWAVRL +GTYLIDG+YF+ LEL+
Sbjct: 84  CLRVNSGLVKPGDVGRIVSRKPMDVWAVRLSIGTYLIDGKYFKPLELE 130

[Close]

BLAST of Csa4G279890 vs. NCBI nr
Match: gi|703097269|ref|XP_010096070.1| (hypothetical protein L484_000626 [Morus notabilis])

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-32
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 21  SISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTA 80
           ++SSF+  N    RS     +KCESSA       S  +  KLEIGSP++V+EAPKMIKTA
Sbjct: 22  TLSSFHTKNG---RSSSIFSIKCESSAD----NESAKRLSKLEIGSPIVVVEAPKMIKTA 81

Query: 81  ASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           ASVPCLRVNSG++NPGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ L++D+
Sbjct: 82  ASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKPLDVDK 127

The following BLAST results are available for this feature:

BLAST of Csa4G279890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Q6_CUCSA	8.4e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1	[more]
M5WDH9_PRUPE	6.8e-33	68.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013250mg PE=4 SV=1	[more]
W9RP34_9ROSA	4.4e-32	64.60	Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1	[more]
B9SNJ4_RICCO	1.3e-31	59.85	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737540 PE=4 SV=1	[more]
A0A067L6S1_JATCU	3.7e-31	60.83	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23880 PE=4 SV=1	[more]

BLAST of Csa4G279890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20935.1	4.3e-31	63.54	unknown protein	[more]

BLAST of Csa4G279890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448996\|ref\|XP_004142251.1\|	1.2e-67	100.00	PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus]	[more]
gi\|659097820\|ref\|XP_008449832.1\|	7.1e-60	91.73	PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo]	[more]
gi\|645218453\|ref\|XP_008230685.1\|	4.6e-35	61.65	PREDICTED: uncharacterized protein LOC103329930 [Prunus mume]	[more]
gi\|595830802\|ref\|XP_007206139.1\|	9.7e-33	68.52	hypothetical protein PRUPE_ppa013250mg [Prunus persica]	[more]
gi\|703097269\|ref\|XP_010096070.1\|	6.3e-32	64.60	hypothetical protein L484_000626 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021495	DUF3148

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU101739	cucumber EST collection version 3.0	transcribed_cluster
CU131792	cucumber EST collection version 3.0	transcribed_cluster
CU134272	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G279890.1	Csa4G279890.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU101739	CU101739	transcribed_cluster
CU134272	CU134272	transcribed_cluster
CU131792	CU131792	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021495	Protein of unknown function DUF3148	PFAM	PF11347	DUF3148	coord: 64..126 score: 3.1
None	No IPR available	PANTHER	PTHR36799	FAMILY NOT NAMED	coord: 1..133 score: 5.9
None	No IPR available	PANTHER	PTHR36799:SF2	SUBFAMILY NOT NAMED	coord: 1..133 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G279890	Cla003160	Watermelon (97103) v1	cuwmB347
Csa4G279890	MELO3C014688	Melon (DHL92) v3.5.1	cumeB295
Csa4G279890	ClCG02G024060	Watermelon (Charleston Gray)	cuwcgB292
Csa4G279890	Lsi10G009610	Bottle gourd (USVL1VR-Ls)	culsiB246
Csa4G279890	MELO3C014688.2	Melon (DHL92) v3.6.1	cumedB279
Csa4G279890	Cla97C02G050270	Watermelon (97103) v2	cuwmbB287
Csa4G279890	Bhi10G000354	Wax gourd	cuwgoB390
Csa4G279890	CSPI04G12910	Wild cucumber (PI 183967)	cpicuB181
Csa4G279890	Cucsa.153110	Cucumber (Gy14) v1	cgycuB220
Csa4G279890	CmoCh20G000260	Cucurbita moschata (Rifu)	cmocuB538
Csa4G279890	Cp4.1LG16g09190	Cucurbita pepo (Zucchini)	cpecuB278
Csa4G279890	CsGy4G012470	Cucumber (Gy14) v2	cgybcuB167
Csa4G279890	Carg06952	Silver-seed gourd	carcuB0552

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G279890	Silver-seed gourd	carcuB0935
Csa4G279890	Cucumber (Gy14) v1	cgycuB345
Csa4G279890	Cucurbita maxima (Rimu)	cmacuB549
Csa4G279890	Cucurbita maxima (Rimu)	cmacuB605
Csa4G279890	Cucurbita moschata (Rifu)	cmocuB596
Csa4G279890	Cucurbita pepo (Zucchini)	cpecuB728