CU101739 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU101739
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChlororespiratory reduction 42
LocationChr4 : 10796443 .. 10797022 (-)
Sequence length585
The following sequences are available for this feature:

transcribed_cluster sequence

AGTTAACTAAGTACTGTCTGTTCCGTTGCTTTATCGTGTGTGGTTGAACAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAACTTGTCCGGAGAGGCTTTCGATTTGAAGGTTCCGAGCTTACAAATTCACCTTTCATGGCGATTTTCGTTGGAATGCGGCGTGTGTTTGAATCCATTTGTAGGAAATCATTCCGTTATCGTTGCATGTTGTTCAGATCACCCTCCATGTCTCTATCTTGATGCAGCAGATTGAATGCAGCTTGATTAGCCATGAATTTAGGAGTCTTATGTGCATAGTTTATTCCTTACGAATAAATTTTCGATTCTATAACCTATATTTTACTGCAAATTTTGTTATGCATCTTCGTGGAATTCGCGATGCAACTCGAACCCTCAATCCCGTTTGATGGTTTCTTTGTTGCATGTTTCCATTGTATTTTAAGCATGGATATAATTTTTGGTTTACCATGATGTATTAATATATTAATATAGAGATCGGTTGGTTG
BLAST of CU101739 vs. TrEMBL
Match: A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-10
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ
Sbjct: 98  VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 133

Query: 104 152
           
Sbjct: 158 133

BLAST of CU101739 vs. TrEMBL
Match: A0A0F7J2C1_9ROSI (Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKDVWAVRL +GTYLIDG+YF+ LELDQ
Sbjct: 102 VGRIVSRKPKDVWAVRLSIGTYLIDGKYFKLLELDQ 137

Query: 104 152
           
Sbjct: 162 137

BLAST of CU101739 vs. TrEMBL
Match: D7M061_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489002 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 69  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

Query: 104 152
           
Sbjct: 129 104

BLAST of CU101739 vs. TrEMBL
Match: V4KVV2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015046mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 82  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 117

Query: 104 152
           
Sbjct: 142 117

BLAST of CU101739 vs. TrEMBL
Match: Q8L8M4_ARATH (At5g20935 OS=Arabidopsis thaliana GN=At5g20935 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 69  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

Query: 104 152
           
Sbjct: 129 104

BLAST of CU101739 vs. NCBI nr
Match: gi|449448996|ref|XP_004142251.1| (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ
Sbjct: 98  VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 133

Query: 104 152
           
Sbjct: 158 133

BLAST of CU101739 vs. NCBI nr
Match: gi|659097820|ref|XP_008449832.1| (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ
Sbjct: 98  VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 133

Query: 104 152
           
Sbjct: 158 133

BLAST of CU101739 vs. NCBI nr
Match: gi|821160374|gb|AKH05240.1| (chlororespiratory reduction 42 [Hypseocharis bilobata])

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKDVWAVRL +GTYLIDG+YF+ LELDQ
Sbjct: 102 VGRIVSRKPKDVWAVRLSIGTYLIDGKYFKLLELDQ 137

Query: 104 152
           
Sbjct: 162 137

BLAST of CU101739 vs. NCBI nr
Match: gi|18420354|ref|NP_568406.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 69  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

Query: 104 152
           
Sbjct: 129 104

BLAST of CU101739 vs. NCBI nr
Match: gi|21618165|gb|AAM67215.1| (unknown [Arabidopsis thaliana])

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 2

Query: 44  LNRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 103
           + RIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 69  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

Query: 104 152
           
Sbjct: 129 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L1Q6_CUCSA6.8e-1094.44Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1[more]
A0A0F7J2C1_9ROSI6.4e-0880.56Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1[more]
D7M061_ARALL1.4e-0775.00Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
V4KVV2_EUTSA1.4e-0775.00Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015046mg PE=4 SV=1[more]
Q8L8M4_ARATH1.4e-0775.00At5g20935 OS=Arabidopsis thaliana GN=At5g20935 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
gi|449448996|ref|XP_004142251.1|2.0e-1094.44PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus][more]
gi|659097820|ref|XP_008449832.1|2.0e-1094.44PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo][more]
gi|821160374|gb|AKH05240.1|1.8e-0880.56chlororespiratory reduction 42 [Hypseocharis bilobata][more]
gi|18420354|ref|NP_568406.1|4.1e-0875.00uncharacterized protein [Arabidopsis thaliana][more]
gi|21618165|gb|AAM67215.1|4.1e-0875.00unknown [Arabidopsis thaliana][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G279890Csa4G279890gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LZCZRFKNP3UI02LZCZREST
FKNP3UI02MDG24FKNP3UI02MDG24EST
FKNP3UI02N4GFPFKNP3UI02N4GFPEST
H0121741H0121741EST
H0180459H0180459EST