Carg06952 (gene) Silver-seed gourd

NameCarg06952
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionChlororespiratory reduction 42
LocationCucurbita_argyrosperma_scaffold_065 : 494485 .. 495240 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCACCGTCAGTTCCATCTCTTCGTTCAACGTCTCCAACAGCTTAAGCACTCGGTCTCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTTGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGGCTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGGTGAGCGGTCGATCGATCTTCGTCCTCTGTCTTTGGCATTGCTTCGAACACCTTATGTGCAACGCTTGTAACTAATGCCTGCCTGCTGCGTGCGTAATTGAACAGAATCGTGTCAAGAAAACCGAAGGACGTGTGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGAGCCCGTCGTGTTGAATGTTGTTGATCGAAACATAGTTCAATAATTAAGGCCTTATGATCTAATCCAAAAGATCAAATGTTACAAATCTCACCTTCAATTAATTAAAAAAACACTCGTGCATGATTGAACTAGACACTGAATTTTACTGCTTCGGTATCACTTTATCGATGATGAGTTTACTCAAATATCCCTAATTATATAACTAGTCTTCTCTTGGAGTTGATATACGTGAGGTTAGGAGAGGTG

mRNA sequence

ATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCACCGTCAGTTCCATCTCTTCGTTCAACGTCTCCAACAGCTTAAGCACTCGGTCTCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTTGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGGCTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGAATCGTGTCAAGAAAACCGAAGGACGTGTGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGAGCCCGTCGTGTTGAATGTTGTTGATCGAAACATAGTTCAATAATTAAGGCCTTATGATCTAATCCAAAAGATCAAATGTTACAAATCTCACCTTCAATTAATTAAAAAAACACTCGTGCATGATTGAACTAGACACTGAATTTTACTGCTTCGGTATCACTTTATCGATGATGAGTTTACTCAAATATCCCTAATTATATAACTAGTCTTCTCTTGGAGTTGATATACGTGAGGTTAGGAGAGGTG

Coding sequence (CDS)

ATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCACCGTCAGTTCCATCTCTTCGTTCAACGTCTCCAACAGCTTAAGCACTCGGTCTCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTTGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGGCTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGAATCGTGTCAAGAAAACCGAAGGACGTGTGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGA

Protein sequence

MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
BLAST of Carg06952 vs. NCBI nr
Match: XP_022944245.1 (uncharacterized protein LOC111448751 [Cucurbita moschata])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MATSLSSATAIPRPSIGIG VSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS
Sbjct: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60

Query: 61  WKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
           WKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY
Sbjct: 61  WKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120

Query: 121 LIDGRYFRPLELDQ 135
           LIDGRYFRPLELDQ
Sbjct: 121 LIDGRYFRPLELDQ 134

BLAST of Carg06952 vs. NCBI nr
Match: XP_023513105.1 (uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 4.6e-63
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MATSLSSATAIPRPSIGIG VSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS
Sbjct: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60

Query: 61  WKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY
Sbjct: 61  RKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120

Query: 121 LIDGRYFRPLELDQ 135
           LIDGRYFRPLELDQ
Sbjct: 121 LIDGRYFRPLELDQ 134

BLAST of Carg06952 vs. NCBI nr
Match: XP_022985824.1 (uncharacterized protein LOC111483753 [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 3.9e-62
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MATSLSSATAIPRPSIGIG V+SISSFN+SNSLSTRSQPRS VKCESSASAADPTPPAKS
Sbjct: 1   MATSLSSATAIPRPSIGIGIVNSISSFNISNSLSTRSQPRSFVKCESSASAADPTPPAKS 60

Query: 61  WKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY
Sbjct: 61  RKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120

Query: 121 LIDGRYFRPLELDQ 135
           LIDGRYFRPLELDQ
Sbjct: 121 LIDGRYFRPLELDQ 134

BLAST of Carg06952 vs. NCBI nr
Match: XP_008449832.1 (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 116/135 (85.93%), Postives = 121/135 (89.63%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
           MA S S  T I RPS  I T++SISSFNVSN+LSTRSQPRS+VKCESSASAAD  TPPAK
Sbjct: 1   MAASFSPTTPISRPS--IRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAK 60

Query: 61  SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
           S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120

Query: 121 YLIDGRYFRPLELDQ 135
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRALELDQ 133

BLAST of Carg06952 vs. NCBI nr
Match: XP_004142251.1 (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hypothetical protein Csa_4G279890 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-47
Identity = 109/135 (80.74%), Postives = 116/135 (85.93%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
           MA  L   T   RP+I I  ++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  T P K
Sbjct: 1   MAAYLPPTTPFSRPNIRI--LTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPK 60

Query: 61  SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
           S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120

Query: 121 YLIDGRYFRPLELDQ 135
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRALELDQ 133

BLAST of Carg06952 vs. TAIR10
Match: AT5G20935.1 (unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-30
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 0

Query: 40  RSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV 99
           R  V+C      A+  P  KS KL++GSP+I+VEAPK+IKTAAS+PCLR NSG++ PGDV
Sbjct: 14  RVSVRC---CEIANEAPRPKS-KLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGDV 73

Query: 100 GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ 135
           GRIVSRKPKD+W VRL +GTYL+DG+YF+ LELD+
Sbjct: 74  GRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

BLAST of Carg06952 vs. TrEMBL
Match: tr|A0A1S3BMX2|A0A1S3BMX2_CUCME (uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-51
Identity = 116/135 (85.93%), Postives = 121/135 (89.63%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
           MA S S  T I RPS  I T++SISSFNVSN+LSTRSQPRS+VKCESSASAAD  TPPAK
Sbjct: 1   MAASFSPTTPISRPS--IRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAK 60

Query: 61  SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
           S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120

Query: 121 YLIDGRYFRPLELDQ 135
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRALELDQ 133

BLAST of Carg06952 vs. TrEMBL
Match: tr|A0A0A0L1Q6|A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-47
Identity = 109/135 (80.74%), Postives = 116/135 (85.93%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
           MA  L   T   RP+I I  ++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  T P K
Sbjct: 1   MAAYLPPTTPFSRPNIRI--LTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPK 60

Query: 61  SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
           S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120

Query: 121 YLIDGRYFRPLELDQ 135
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRALELDQ 133

BLAST of Carg06952 vs. TrEMBL
Match: tr|A0A2I4H6Q3|A0A2I4H6Q3_9ROSI (uncharacterized protein LOC109013992 OS=Juglans regia OX=51240 GN=LOC109013992 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 88/138 (63.77%), Postives = 101/138 (73.19%), Query Frame = 0

Query: 1   MATSLSSATAIP--RPSIGIGTVSSISSFNVSNSLSTRSQPRSL-VKCESSASAAD--PT 60
           MA+SLSS T IP    SI  GT  S S   +S          ++ VKCES  + A+  P 
Sbjct: 3   MASSLSSTTRIPCCSSSISRGTTPSTSVPLISLXXXXXXXXXTVTVKCESKETPAEIGPL 62

Query: 61  PPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRL 120
           P AKS KLEIGSP+IV+EAP MIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVW VRL
Sbjct: 63  PAAKSSKLEIGSPIIVIEAPTMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRL 122

Query: 121 KVGTYLIDGRYFRPLELD 134
            +GTYLIDG+YF+PLELD
Sbjct: 123 AIGTYLIDGKYFKPLELD 140

BLAST of Carg06952 vs. TrEMBL
Match: tr|A0A2N9HEJ5|A0A2N9HEJ5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37982 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 80/134 (59.70%), Postives = 94/134 (70.15%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MA S SS T+IP       + S         S+  R      +KCES   +A+   PAKS
Sbjct: 50  MALSFSSTTSIPYSKFRSNSTSQFDRL----SIQIRCPSVVTIKCESKEPSAEAGLPAKS 109

Query: 61  WKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KLEIGSPVI +EAPKM+KTAASVPCLRVNSG++ PGDVGRIVSRKPKDVW VRL +GTY
Sbjct: 110 SKLEIGSPVIFIEAPKMMKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLTIGTY 169

Query: 121 LIDGRYFRPLELDQ 135
           LIDG+YF+ LELD+
Sbjct: 170 LIDGKYFKALELDE 179

BLAST of Carg06952 vs. TrEMBL
Match: tr|W9RP34|W9RP34_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000099 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 83/134 (61.94%), Postives = 99/134 (73.88%), Query Frame = 0

Query: 1   MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MA SLSSA   P P +      ++SSF+  N    RS     +KCESS   AD     + 
Sbjct: 1   MAISLSSAANSP-PCLKPLLPKTLSSFHTKNG---RSSSIFSIKCESS---ADNESAKRL 60

Query: 61  WKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KLEIGSP++VVEAPKMIKTAASVPCLRVNSG++NPGDVGRIVSRKPKDVW VRL +GTY
Sbjct: 61  SKLEIGSPIVVVEAPKMIKTAASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRPLELDQ 135
           LIDG+YF+PL++D+
Sbjct: 121 LIDGKYFKPLDVDK 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022944245.11.1e-6499.25uncharacterized protein LOC111448751 [Cucurbita moschata][more]
XP_023513105.14.6e-6398.51uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo][more]
XP_022985824.13.9e-6296.27uncharacterized protein LOC111483753 [Cucurbita maxima][more]
XP_008449832.12.4e-5185.93PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo][more]
XP_004142251.12.7e-4780.74PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hy... [more]
Match NameE-valueIdentityDescription
AT5G20935.13.7e-3064.21unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BMX2|A0A1S3BMX2_CUCME1.6e-5185.93uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=... [more]
tr|A0A0A0L1Q6|A0A0A0L1Q6_CUCSA1.8e-4780.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1[more]
tr|A0A2I4H6Q3|A0A2I4H6Q3_9ROSI1.1e-3363.77uncharacterized protein LOC109013992 OS=Juglans regia OX=51240 GN=LOC109013992 P... [more]
tr|A0A2N9HEJ5|A0A2N9HEJ5_FAGSY1.2e-3259.70Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37982 PE=4 SV=1[more]
tr|W9RP34|W9RP34_9ROSA2.8e-3261.94Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000099 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021495DUF3148
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06952-RACarg06952-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021495Protein of unknown function DUF3148PFAMPF11347DUF3148coord: 65..127
e-value: 7.1E-25
score: 86.4
IPR021495Protein of unknown function DUF3148PANTHERPTHR36799FAMILY NOT NAMEDcoord: 23..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..45
NoneNo IPR availablePANTHERPTHR36799:SF2SUBFAMILY NOT NAMEDcoord: 23..134