Cucsa.153110 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.153110
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Chlororespiratory reduction 42
Location	scaffold01124 : 323052 .. 323579 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGCCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGGTGATTACCCAATTGCCACTCGTCCTCTGTCTTTAACATTTCATCGAACACATTACGTGCATCGTTTTCTTTTTTTGGTAACTAAGTACTGTCTGTTCCGTTGCTTTATCGTGTGTGGTTGAACAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

mRNA sequence

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGCCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

Coding sequence (CDS)

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGCCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

Protein sequence

MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ*

Homology

[Close]

BLAST of Cucsa.153110 vs. TrEMBL
Match: A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.2e-67
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQT PPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of Cucsa.153110 vs. TrEMBL
Match: M5WDH9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013250mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-32
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 25  FNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVP 84
           FN SNT   RS     VKC S+  PA G     +  KLEIGSP+IV+EAP+MIKTAASVP
Sbjct: 24  FNTSNTYK-RSPNAVSVKCASTEPPAAGAGSAGRKSKLEIGSPIIVVEAPRMIKTAASVP 83

Query: 85  CLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELD 133
           CLRVNSG++ PGDVGRIVSRKP DVWAVRL +GTYLIDG+YF+ LEL+
Sbjct: 84  CLRVNSGLVKPGDVGRIVSRKPMDVWAVRLSIGTYLIDGKYFKPLELE 130

[Close]

BLAST of Cucsa.153110 vs. TrEMBL
Match: B9SNJ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737540 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.7e-32
Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MA+ L PT+    P  ++  SI  F  +N  T      +  KC+S  S ++  +PP K  
Sbjct: 1   MASSLTPTSTI--PYTKLHNSILQFTNANFRTPSFSVAT--KCQSQESSSE-TSPPAKIT 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KL IGSP++V+EAPKMIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTYL
Sbjct: 61  KLAIGSPIVVVEAPKMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTYL 120

Query: 121 IDGRYFRALEL 132
           IDG+YF+ LEL
Sbjct: 121 IDGKYFKPLEL 126

[Close]

BLAST of Cucsa.153110 vs. TrEMBL
Match: W9RP34_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.7e-32
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 21  SISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTA 80
           ++SSF+  N    RS     +KCESSA     +    +  KLEIGSP++V+EAPKMIKTA
Sbjct: 22  TLSSFHTKNG---RSSSIFSIKCESSADNESAK----RLSKLEIGSPIVVVEAPKMIKTA 81

Query: 81  ASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           ASVPCLRVNSG++NPGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ L++D+
Sbjct: 82  ASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKPLDVDK 127

[Close]

BLAST of Cucsa.153110 vs. TrEMBL
Match: A0A0F7J2C1_9ROSI (Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.3e-31
Identity = 71/97 (73.20%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 40  IVKCESSASPADGQTPPP---KSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPG 99
           +V+CES+ S      P P   KS KLE+GSPVIV+EAP MIKTAASVPCLRVNSG++ PG
Sbjct: 45  VVRCESNES----SQPVPAAAKSSKLEVGSPVIVVEAPIMIKTAASVPCLRVNSGLVKPG 104

Query: 100 DVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           DVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ LELDQ
Sbjct: 105 DVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKLLELDQ 137

[Close]

BLAST of Cucsa.153110 vs. TAIR10
Match: AT5G20935.1 (AT5G20935.1 unknown protein)

HSP 1 Score: 133.7 bits (335), Expect = 8.7e-32
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 1


Query: 38  RSIVKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGD 97
           R  V+C   A+ A    P PKS KL++GSP+I++EAPK+IKTAAS+PCLR NSG++ PGD
Sbjct: 14  RVSVRCCEIANEA----PRPKS-KLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGD 73

Query: 98  VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           VGRIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 74  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

[Close]

BLAST of Cucsa.153110 vs. NCBI nr
Match: gi|449448996|ref|XP_004142251.1| (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 4.6e-67
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQT PPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of Cucsa.153110 vs. NCBI nr
Match: gi|659097820|ref|XP_008449832.1| (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 8.4e-61
Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MAA   PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQTPP KSQ
Sbjct: 1   MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of Cucsa.153110 vs. NCBI nr
Match: gi|645218453|ref|XP_008230685.1| (PREDICTED: uncharacterized protein LOC103329930 [Prunus mume])

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-34
Identity = 81/133 (60.90%), Postives = 98/133 (73.68%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSI-VKCESSASPADGQTPPPKS 60
           MA  L  TT  +   +R  +S+  FN SNT   R  P ++ VKC S+  PA G     + 
Sbjct: 1   MALSLSSTTAITCSKLRDNSSLQ-FNTSNTY--RRSPNAVSVKCASTEPPAAGAGSAGRK 60

Query: 61  QKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTY 120
            KLEIGSP+IV+EAP+MIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTY
Sbjct: 61  SKLEIGSPIIVVEAPRMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRALELD 133
           LIDG+YF+ LE+D
Sbjct: 121 LIDGKYFKPLEID 130

[Close]

BLAST of Cucsa.153110 vs. NCBI nr
Match: gi|595830802|ref|XP_007206139.1| (hypothetical protein PRUPE_ppa013250mg [Prunus persica])

HSP 1 Score: 146.4 bits (368), Expect = 3.7e-32
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 25  FNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVP 84
           FN SNT   RS     VKC S+  PA G     +  KLEIGSP+IV+EAP+MIKTAASVP
Sbjct: 24  FNTSNTYK-RSPNAVSVKCASTEPPAAGAGSAGRKSKLEIGSPIIVVEAPRMIKTAASVP 83

Query: 85  CLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELD 133
           CLRVNSG++ PGDVGRIVSRKP DVWAVRL +GTYLIDG+YF+ LEL+
Sbjct: 84  CLRVNSGLVKPGDVGRIVSRKPMDVWAVRLSIGTYLIDGKYFKPLELE 130

[Close]

BLAST of Cucsa.153110 vs. NCBI nr
Match: gi|255573269|ref|XP_002527563.1| (PREDICTED: uncharacterized protein LOC8289540 [Ricinus communis])

HSP 1 Score: 145.2 bits (365), Expect = 8.2e-32
Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 1


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MA+ L PT+    P  ++  SI  F  +N  T      +  KC+S  S ++  +PP K  
Sbjct: 1   MASSLTPTSTI--PYTKLHNSILQFTNANFRTPSFSVAT--KCQSQESSSE-TSPPAKIT 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KL IGSP++V+EAPKMIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTYL
Sbjct: 61  KLAIGSPIVVVEAPKMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTYL 120

Query: 121 IDGRYFRALEL 132
           IDG+YF+ LEL
Sbjct: 121 IDGKYFKPLEL 126

The following BLAST results are available for this feature:

BLAST of Cucsa.153110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Q6_CUCSA	3.2e-67	99.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1	[more]
M5WDH9_PRUPE	2.6e-32	67.59	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013250mg PE=4 SV=1	[more]
B9SNJ4_RICCO	5.7e-32	58.78	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737540 PE=4 SV=1	[more]
W9RP34_9ROSA	9.7e-32	63.72	Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1	[more]
A0A0F7J2C1_9ROSI	6.3e-31	73.20	Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1	[more]

BLAST of Cucsa.153110 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20935.1	8.7e-32	66.67	unknown protein	[more]

BLAST of Cucsa.153110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448996\|ref\|XP_004142251.1\|	4.6e-67	99.25	PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus]	[more]
gi\|659097820\|ref\|XP_008449832.1\|	8.4e-61	92.48	PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo]	[more]
gi\|645218453\|ref\|XP_008230685.1\|	1.8e-34	60.90	PREDICTED: uncharacterized protein LOC103329930 [Prunus mume]	[more]
gi\|595830802\|ref\|XP_007206139.1\|	3.7e-32	67.59	hypothetical protein PRUPE_ppa013250mg [Prunus persica]	[more]
gi\|255573269\|ref\|XP_002527563.1\|	8.2e-32	58.78	PREDICTED: uncharacterized protein LOC8289540 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021495	DUF3148

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.153110.1	Cucsa.153110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021495	Protein of unknown function DUF3148	PFAM	PF11347	DUF3148	coord: 64..126 score: 3.1
None	No IPR available	PANTHER	PTHR36799	FAMILY NOT NAMED	coord: 1..133 score: 1.4
None	No IPR available	PANTHER	PTHR36799:SF2	SUBFAMILY NOT NAMED	coord: 1..133 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.153110	Cla003160	Watermelon (97103) v1	cgywmB272
Cucsa.153110	Csa4G279890	Cucumber (Chinese Long) v2	cgycuB220
Cucsa.153110	MELO3C014688	Melon (DHL92) v3.5.1	cgymeB257
Cucsa.153110	ClCG02G024060	Watermelon (Charleston Gray)	cgywcgB258
Cucsa.153110	CSPI04G12910	Wild cucumber (PI 183967)	cgycpiB225
Cucsa.153110	CmoCh20G000260	Cucurbita moschata (Rifu)	cgycmoB0423
Cucsa.153110	Lsi10G009610	Bottle gourd (USVL1VR-Ls)	cgylsiB245
Cucsa.153110	Cp4.1LG16g09190	Cucurbita pepo (Zucchini)	cgycpeB0409
Cucsa.153110	MELO3C014688.2	Melon (DHL92) v3.6.1	cgymedB255
Cucsa.153110	CsaV3_4G023270	Cucumber (Chinese Long) v3	cgycucB231
Cucsa.153110	Cla97C02G050270	Watermelon (97103) v2	cgywmbB259
Cucsa.153110	Bhi10G000354	Wax gourd	cgywgoB298
Cucsa.153110	Carg06952	Silver-seed gourd	carcgyB0603

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.153110	Cucumber (Gy14) v1	cgycgyB094
Cucsa.153110	Cucurbita maxima (Rimu)	cgycmaB0424
Cucsa.153110	Cucurbita maxima (Rimu)	cgycmaB0423
Cucsa.153110	Cucurbita moschata (Rifu)	cgycmoB0424
Cucsa.153110	Cucurbita pepo (Zucchini)	cgycpeB0410
Cucsa.153110	Silver-seed gourd	carcgyB1040