Cp4.1LG16g09190 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG16g09190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionChlororespiratory reduction 42
LocationCp4.1LG16 : 8576131 .. 8577138 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAAAAAAAAACAAAACAAAACAAAACAAAAGCTTTAATCTCAATATCCATTCCCAAACATATCCTCGAATTGAAACGTTGGTGATAAGATACGGTTCCAATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCATCGTCAGTTCCATCTCTTCCTTCAACGTCTCCAACAGCTTAAGCACTCGGTCTCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTCGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGGCTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGGTGAGCGGTCGATCGATCTTCGTCCTCTGTCTTTGGCATTGCTTCGAACACCTTATGTGCAACGCTTGTAACTAATGCCTGCCTGCTGCGTGCGTAATTGAACAGAATCGTGTCAAGAAAACCGAAGGACGTGTGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGAGCCCGTCGTATTGAATGTTGTTGATCGAAACATAGTTCAATAATTAAGGCGTTATGATCTAATCCAAGATCAAATGTTAAAAATCTCACCTTCAATTAATTAAAAAAACCCTCACGCATGGTTGAACTAGATACTGAATTTTATTGCTTCGGTATCACTTTATCGATGAAGAATTTACTCAAATATCCCTAATTATATAAATAGTCTTGTCTGGAGTTGATATACGTGAGGTTAGAAGAGGTATGGGTGAAAACAAGTTTAATATGTTTTTATTTAATTTGAATCATCAGTGTTCCCAGGATATATTAAATGATACATGCAATGCACGGATAATACAATTTGATGGTGTTGTAATTATTGATGAGAATTAAAATCACATGTAAGAAAAAGAGAAAAA

mRNA sequence

TTAAAAAAAAAACAAAACAAAACAAAACAAAAGCTTTAATCTCAATATCCATTCCCAAACATATCCTCGAATTGAAACGTTGGTGATAAGATACGGTTCCAATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCATCGTCAGTTCCATCTCTTCCTTCAACGTCTCCAACAGCTTAAGCACTCGGTCTCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTCGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGGCTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGAATCGTGTCAAGAAAACCGAAGGACGTGTGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGAGCCCGTCGTATTGAATGTTGTTGATCGAAACATAGTTCAATAATTAAGGCGTTATGATCTAATCCAAGATCAAATGTTAAAAATCTCACCTTCAATTAATTAAAAAAACCCTCACGCATGGTTGAACTAGATACTGAATTTTATTGCTTCGGTATCACTTTATCGATGAAGAATTTACTCAAATATCCCTAATTATATAAATAGTCTTGTCTGGAGTTGATATACGTGAGGTTAGAAGAGGTATGGGTGAAAACAAGTTTAATATGTTTTTATTTAATTTGAATCATCAGTGTTCCCAGGATATATTAAATGATACATGCAATGCACGGATAATACAATTTGATGGTGTTGTAATTATTGATGAGAATTAAAATCACATGTAAGAAAAAGAGAAAAA

Coding sequence (CDS)

ATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCATCGTCAGTTCCATCTCTTCCTTCAACGTCTCCAACAGCTTAAGCACTCGGTCTCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTCGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGGCTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGAATCGTGTCAAGAAAACCGAAGGACGTGTGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGA

Protein sequence

MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
BLAST of Cp4.1LG16g09190 vs. TrEMBL
Match: A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.7e-48
Identity = 109/135 (80.74%), Postives = 117/135 (86.67%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
           MA  L   T   RP+I I  ++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  T P K
Sbjct: 1   MAAYLPPTTPFSRPNIRI--LTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPK 60

Query: 61  SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
           S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120

Query: 121 YLIDGRYFRPLELDQ 135
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRALELDQ 133

BLAST of Cp4.1LG16g09190 vs. TrEMBL
Match: W9RP34_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.0e-33
Identity = 83/134 (61.94%), Postives = 100/134 (74.63%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MA SLSSA   P P +   +  ++SSF+  N    RS     +KCESSA   D     + 
Sbjct: 1   MAISLSSAANSP-PCLKPLLPKTLSSFHTKNG---RSSSIFSIKCESSA---DNESAKRL 60

Query: 61  RKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KLEIGSP++VVEAPKMIKTAASVPCLRVNSG++NPGDVGRIVSRKPKDVW VRL +GTY
Sbjct: 61  SKLEIGSPIVVVEAPKMIKTAASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRPLELDQ 135
           LIDG+YF+PL++D+
Sbjct: 121 LIDGKYFKPLDVDK 127

BLAST of Cp4.1LG16g09190 vs. TrEMBL
Match: B9SNJ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737540 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-32
Identity = 77/132 (58.33%), Postives = 98/132 (74.24%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MA+SL+  + IP   +   I+   ++   + S S  +      KC+S  S+++ +PPAK 
Sbjct: 1   MASSLTPTSTIPYTKLHNSILQFTNANFRTPSFSVAT------KCQSQESSSETSPPAKI 60

Query: 61  RKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KL IGSP++VVEAPKMIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVW VRL +GTY
Sbjct: 61  TKLAIGSPIVVVEAPKMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRPLEL 133
           LIDG+YF+PLEL
Sbjct: 121 LIDGKYFKPLEL 126

BLAST of Cp4.1LG16g09190 vs. TrEMBL
Match: A0A0F7J2C1_9ROSI (Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 83/137 (60.58%), Postives = 98/137 (71.53%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRS---LVKCESSASAADPTPP 60
           MA SLSS+T I        + +S   F  S+      +P S   +V+CES+ S+      
Sbjct: 1   MAFSLSSSTQILHSQFPRPLDNSFLLFKSSSCSWIHRRPSSTVVVVRCESNESSQPVPAA 60

Query: 61  AKSRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKV 120
           AKS KLE+GSPVIVVEAP MIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVW VRL +
Sbjct: 61  AKSSKLEVGSPVIVVEAPIMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSI 120

Query: 121 GTYLIDGRYFRPLELDQ 135
           GTYLIDG+YF+ LELDQ
Sbjct: 121 GTYLIDGKYFKLLELDQ 137

BLAST of Cp4.1LG16g09190 vs. TrEMBL
Match: A0A067L6S1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23880 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.5e-32
Identity = 80/134 (59.70%), Postives = 96/134 (71.64%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MA SLSS + IP   +     +SI  F  +NS S       + KCES  S+     P K 
Sbjct: 1   MALSLSSTSTIPCTKLH----NSILQF--TNSSSRNQNFNFVTKCESKESS-----PEKF 60

Query: 61  RKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
           +KLEIGSP++V+EAPKMIKTA SVPCLRVNSG++ PGDVGRIVSRKPKDVW VRL +GTY
Sbjct: 61  KKLEIGSPIVVIEAPKMIKTATSVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRPLELDQ 135
           LIDG+YF+PLEL +
Sbjct: 121 LIDGKYFKPLELQE 123

BLAST of Cp4.1LG16g09190 vs. TAIR10
Match: AT5G20935.1 (AT5G20935.1 unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-30
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 1

Query: 40  RSLVKCESSASAADPTPPAKSRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV 99
           R  V+C   A+ A    P    KL++GSP+I+VEAPK+IKTAAS+PCLR NSG++ PGDV
Sbjct: 14  RVSVRCCEIANEA----PRPKSKLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGDV 73

Query: 100 GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ 135
           GRIVSRKPKD+W VRL +GTYL+DG+YF+ LELD+
Sbjct: 74  GRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

BLAST of Cp4.1LG16g09190 vs. NCBI nr
Match: gi|659097820|ref|XP_008449832.1| (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 2.7e-51
Identity = 115/135 (85.19%), Postives = 121/135 (89.63%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
           MA S S  T I RPSI    ++SISSFNVSN+LSTRSQPRS+VKCESSASAAD  TPPAK
Sbjct: 1   MAASFSPTTPISRPSIRT--LTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAK 60

Query: 61  SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
           S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120

Query: 121 YLIDGRYFRPLELDQ 135
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRALELDQ 133

BLAST of Cp4.1LG16g09190 vs. NCBI nr
Match: gi|449448996|ref|XP_004142251.1| (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 8.2e-48
Identity = 109/135 (80.74%), Postives = 117/135 (86.67%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60
           MA  L   T   RP+I I  ++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  T P K
Sbjct: 1   MAAYLPPTTPFSRPNIRI--LTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPK 60

Query: 61  SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120
           S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120

Query: 121 YLIDGRYFRPLELDQ 135
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRALELDQ 133

BLAST of Cp4.1LG16g09190 vs. NCBI nr
Match: gi|703097269|ref|XP_010096070.1| (hypothetical protein L484_000626 [Morus notabilis])

HSP 1 Score: 149.1 bits (375), Expect = 5.7e-33
Identity = 83/134 (61.94%), Postives = 100/134 (74.63%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MA SLSSA   P P +   +  ++SSF+  N    RS     +KCESSA   D     + 
Sbjct: 1   MAISLSSAANSP-PCLKPLLPKTLSSFHTKNG---RSSSIFSIKCESSA---DNESAKRL 60

Query: 61  RKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KLEIGSP++VVEAPKMIKTAASVPCLRVNSG++NPGDVGRIVSRKPKDVW VRL +GTY
Sbjct: 61  SKLEIGSPIVVVEAPKMIKTAASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRPLELDQ 135
           LIDG+YF+PL++D+
Sbjct: 121 LIDGKYFKPLDVDK 127

BLAST of Cp4.1LG16g09190 vs. NCBI nr
Match: gi|255573269|ref|XP_002527563.1| (PREDICTED: uncharacterized protein LOC8289540 [Ricinus communis])

HSP 1 Score: 146.0 bits (367), Expect = 4.8e-32
Identity = 77/132 (58.33%), Postives = 98/132 (74.24%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS 60
           MA+SL+  + IP   +   I+   ++   + S S  +      KC+S  S+++ +PPAK 
Sbjct: 1   MASSLTPTSTIPYTKLHNSILQFTNANFRTPSFSVAT------KCQSQESSSETSPPAKI 60

Query: 61  RKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTY 120
            KL IGSP++VVEAPKMIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVW VRL +GTY
Sbjct: 61  TKLAIGSPIVVVEAPKMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTY 120

Query: 121 LIDGRYFRPLEL 133
           LIDG+YF+PLEL
Sbjct: 121 LIDGKYFKPLEL 126

BLAST of Cp4.1LG16g09190 vs. NCBI nr
Match: gi|821160374|gb|AKH05240.1| (chlororespiratory reduction 42 [Hypseocharis bilobata])

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-32
Identity = 83/137 (60.58%), Postives = 98/137 (71.53%), Query Frame = 1

Query: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRS---LVKCESSASAADPTPP 60
           MA SLSS+T I        + +S   F  S+      +P S   +V+CES+ S+      
Sbjct: 1   MAFSLSSSTQILHSQFPRPLDNSFLLFKSSSCSWIHRRPSSTVVVVRCESNESSQPVPAA 60

Query: 61  AKSRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKV 120
           AKS KLE+GSPVIVVEAP MIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVW VRL +
Sbjct: 61  AKSSKLEVGSPVIVVEAPIMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSI 120

Query: 121 GTYLIDGRYFRPLELDQ 135
           GTYLIDG+YF+ LELDQ
Sbjct: 121 GTYLIDGKYFKLLELDQ 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1Q6_CUCSA5.7e-4880.74Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1[more]
W9RP34_9ROSA4.0e-3361.94Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1[more]
B9SNJ4_RICCO3.4e-3258.33Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737540 PE=4 SV=1[more]
A0A0F7J2C1_9ROSI4.4e-3260.58Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1[more]
A0A067L6S1_JATCU7.5e-3259.70Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G20935.13.7e-3063.16 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659097820|ref|XP_008449832.1|2.7e-5185.19PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo][more]
gi|449448996|ref|XP_004142251.1|8.2e-4880.74PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus][more]
gi|703097269|ref|XP_010096070.1|5.7e-3361.94hypothetical protein L484_000626 [Morus notabilis][more]
gi|255573269|ref|XP_002527563.1|4.8e-3258.33PREDICTED: uncharacterized protein LOC8289540 [Ricinus communis][more]
gi|821160374|gb|AKH05240.1|6.3e-3260.58chlororespiratory reduction 42 [Hypseocharis bilobata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021495DUF3148
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0016556 mRNA modification
biological_process GO:0010207 photosystem II assembly
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g09190.1Cp4.1LG16g09190.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021495Protein of unknown function DUF3148PFAMPF11347DUF3148coord: 65..127
score: 6.9
NoneNo IPR availablePANTHERPTHR36799FAMILY NOT NAMEDcoord: 5..134
score: 2.6
NoneNo IPR availablePANTHERPTHR36799:SF2SUBFAMILY NOT NAMEDcoord: 5..134
score: 2.6