CsGy4G012470 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G012470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Chlororespiratory reduction 42
Location	Chr4 : 17821519 .. 17822977 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTAATAAAAAAAATATAAGAAGATATCAAATTAAATACAATTAAACTTGCAACGTCAAAGATTAAATTCTAATAATTTAAACCTTTCGAATAGGTAGTTGCATATCATATTTTCGATGGGTTCATTTTTTTTTGTTCATATATGGTACAATTGATAAAAATACAAATTTGAAAAACAAATTAAATGAAAGAAAAAAAAAACATATGATTAGATAGATAATTAGATCTAAAGTCTAAAGAAAATGGGTCCACCTTAACTATCGTTCTAACCACAACACCCGTTCCCAAATATAACATTGACTCGAAACATTGGTGATAAGATACGATTCCAATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGCCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGGTGATTACCCAATTGCCACTCGTCCTCTGTCTTTAACATTTCATCGAACACATTACGTGCATCGTTTTTCTTTTTTTTGGTAACTAAGTACTGTCTGTTCCGTTGCTTTATCGTGTGTGGTTGAACAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAACTTGTCCGGAGAGGCTTTCGATTTGAAGGTTCCGAGCTTACAAATTCACCTTTCATGGCGATTTCGTTGGAATGCGGCGTGTGTTTGAATCCATTTGTAGGAAATCATTCCGTTATCGTTGCATGTTGTTCAGATCACCCTCCATGTCTCTATCTTGATGCAGCAGATTGAATGCAGCTTGATTAGCCATGAATTTAGGAGTCTTATGTGCATAGTTTATTCCTTACGAATAAATTTTCGATTCTATAACATATATTTTACTGCAAATTTGTTATGCATCTTCGTGGAATTCACGATGCAACTCGAACCCTCAATCCCGTTTGATGGTTTCTTTGTTGCATGTTTCCATTGTATTTTAAGCATGGATATAATTTTTGGTTTACCATGATGTATTAATATATTAATATAGAGATCGGTTGGTTCAAATTAGCATGAAATTAAAAATAACTATGTACACATGGAGCAATATATGTGTATGAAATTAAAAGTAACTATATACATATGGAGCAAACATACGTGTTTGTGTGTCACGTCAAATTGTTTAAATATAGTTTTTTGTTTATTGCCAGCGATGAGAATATAAATGTAGAA

mRNA sequence

CATTAATAAAAAAAATATAAGAAGATATCAAATTAAATACAATTAAACTTGCAACGTCAAAGATTAAATTCTAATAATTTAAACCTTTCGAATAGGTAGTTGCATATCATATTTTCGATGGGTTCATTTTTTTTTGTTCATATATGGTACAATTGATAAAAATACAAATTTGAAAAACAAATTAAATGAAAGAAAAAAAAAACATATGATTAGATAGATAATTAGATCTAAAGTCTAAAGAAAATGGGTCCACCTTAACTATCGTTCTAACCACAACACCCGTTCCCAAATATAACATTGACTCGAAACATTGGTGATAAGATACGATTCCAATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGCCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAACTTGTCCGGAGAGGCTTTCGATTTGAAGGTTCCGAGCTTACAAATTCACCTTTCATGGCGATTTCGTTGGAATGCGGCGTGTGTTTGAATCCATTTGTAGGAAATCATTCCGTTATCGTTGCATGTTGTTCAGATCACCCTCCATGTCTCTATCTTGATGCAGCAGATTGAATGCAGCTTGATTAGCCATGAATTTAGGAGTCTTATGTGCATAGTTTATTCCTTACGAATAAATTTTCGATTCTATAACATATATTTTACTGCAAATTTGTTATGCATCTTCGTGGAATTCACGATGCAACTCGAACCCTCAATCCCGTTTGATGGTTTCTTTGTTGCATGTTTCCATTGTATTTTAAGCATGGATATAATTTTTGGTTTACCATGATGTATTAATATATTAATATAGAGATCGGTTGGTTCAAATTAGCATGAAATTAAAAATAACTATGTACACATGGAGCAATATATGTGTATGAAATTAAAAGTAACTATATACATATGGAGCAAACATACGTGTTTGTGTGTCACGTCAAATTGTTTAAATATAGTTTTTTGTTTATTGCCAGCGATGAGAATATAAATGTAGAA

Coding sequence (CDS)

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGCCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

Protein sequence

MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ

Homology

[Close]

BLAST of CsGy4G012470 vs. NCBI nr
Match: XP_004142251.1 (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hypothetical protein Csa_4G279890 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 9.8e-66
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQT PPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of CsGy4G012470 vs. NCBI nr
Match: XP_008449832.1 (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MAA   PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQTPP KSQ
Sbjct: 1   MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of CsGy4G012470 vs. NCBI nr
Match: XP_023513105.1 (uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 110/135 (81.48%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MAAYLPPTTPFSRPN--IRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPK 60
           MA  L   T   RP+  I I++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  TPP K
Sbjct: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60

Query: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
           S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120

Query: 121 YLIDGRYFRALELDQ 134
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134

[Close]

BLAST of CsGy4G012470 vs. NCBI nr
Match: XP_022944245.1 (uncharacterized protein LOC111448751 [Cucurbita moschata])

HSP 1 Score: 203.0 bits (515), Expect = 6.4e-49
Identity = 110/135 (81.48%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MAAYLPPTTPFSRPN--IRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPK 60
           MA  L   T   RP+  I I++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  TPP K
Sbjct: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60

Query: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
           S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120

Query: 121 YLIDGRYFRALELDQ 134
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134

[Close]

BLAST of CsGy4G012470 vs. NCBI nr
Match: XP_022985824.1 (uncharacterized protein LOC111483753 [Cucurbita maxima])

HSP 1 Score: 202.6 bits (514), Expect = 8.4e-49
Identity = 109/135 (80.74%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MAAYLPPTTPFSRPN--IRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPK 60
           MA  L   T   RP+  I I+ SISSFN+SN+L+TRSQPRS VKCESSAS AD  TPP K
Sbjct: 1   MATSLSSATAIPRPSIGIGIVNSISSFNISNSLSTRSQPRSFVKCESSASAAD-PTPPAK 60

Query: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
           S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120

Query: 121 YLIDGRYFRALELDQ 134
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134

[Close]

BLAST of CsGy4G012470 vs. TAIR10
Match: AT5G20935.1 (unknown protein)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-31
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 38  RSIVKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGD 97
           R  V+C   A+ A    P PKS KL++GSP+I++EAPK+IKTAAS+PCLR NSG++ PGD
Sbjct: 14  RVSVRCCEIANEA----PRPKS-KLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGD 73

Query: 98  VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           VGRIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 74  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

[Close]

BLAST of CsGy4G012470 vs. TrEMBL
Match: tr|A0A0A0L1Q6|A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 6.5e-66
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQT PPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of CsGy4G012470 vs. TrEMBL
Match: tr|A0A1S3BMX2|A0A1S3BMX2_CUCME (uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPPKSQ 60
           MAA   PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQTPP KSQ
Sbjct: 1   MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

[Close]

BLAST of CsGy4G012470 vs. TrEMBL
Match: tr|A0A2I4H6Q3|A0A2I4H6Q3_9ROSI (uncharacterized protein LOC109013992 OS=Juglans regia OX=51240 GN=LOC109013992 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.3e-33
Identity = 73/93 (78.49%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 41  VKCESSASPAD-GQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVG 100
           VKCES  +PA+ G  P  KS KLEIGSP+IVIEAP MIKTAASVPCLRVNSG++ PGDVG
Sbjct: 48  VKCESKETPAEIGPLPAAKSSKLEIGSPIIVIEAPTMIKTAASVPCLRVNSGLVKPGDVG 107

Query: 101 RIVSRKPKDVWAVRLKVGTYLIDGRYFRALELD 133
           RIVSRKPKDVWAVRL +GTYLIDG+YF+ LELD
Sbjct: 108 RIVSRKPKDVWAVRLAIGTYLIDGKYFKPLELD 140

[Close]

BLAST of CsGy4G012470 vs. TrEMBL
Match: tr|A0A2N9HEJ5|A0A2N9HEJ5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37982 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 71/93 (76.34%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 41  VKCESSASPADGQTPPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGR 100
           +KCES    A+    P KS KLEIGSPVI IEAPKM+KTAASVPCLRVNSG++ PGDVGR
Sbjct: 88  IKCESKEPSAEAGL-PAKSSKLEIGSPVIFIEAPKMMKTAASVPCLRVNSGLVKPGDVGR 147

Query: 101 IVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           IVSRKPKDVWAVRL +GTYLIDG+YF+ALELD+
Sbjct: 148 IVSRKPKDVWAVRLTIGTYLIDGKYFKALELDE 179

[Close]

BLAST of CsGy4G012470 vs. TrEMBL
Match: tr|A0A2P2JSA8|A0A2P2JSA8_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 7   PTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTPPP---KSQKLE 66
           PT P +RP   +L   S+ N S+    +     + KCES    A   T PP    S KLE
Sbjct: 9   PTIPPTRPRSPLL-QFSNSNASDRSFVK-----VTKCESQNPSASSNTGPPAKNSSAKLE 68

Query: 67  IGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDG 126
           IGSP+IVIEAPKMIKTAASVPCLRVN+G++  GDVGRIVSRKPKDVWAVRL +GTYLIDG
Sbjct: 69  IGSPIIVIEAPKMIKTAASVPCLRVNAGLVKAGDVGRIVSRKPKDVWAVRLSIGTYLIDG 128

Query: 127 RYFRALELDQ 134
           +YF+ LELD+
Sbjct: 129 KYFKPLELDK 132

The following BLAST results are available for this feature:

BLAST of CsGy4G012470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142251.1	9.8e-66	99.25	PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hy...	[more]
XP_008449832.1	1.8e-59	92.48	PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo]	[more]
XP_023513105.1	2.9e-49	81.48	uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo]	[more]
XP_022944245.1	6.4e-49	81.48	uncharacterized protein LOC111448751 [Cucurbita moschata]	[more]
XP_022985824.1	8.4e-49	80.74	uncharacterized protein LOC111483753 [Cucurbita maxima]	[more]

BLAST of CsGy4G012470 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20935.1	1.9e-31	66.67	unknown protein	[more]

BLAST of CsGy4G012470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G012470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1Q6\|A0A0A0L1Q6_CUCSA	6.5e-66	99.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1	[more]
tr\|A0A1S3BMX2\|A0A1S3BMX2_CUCME	1.2e-59	92.48	uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=...	[more]
tr\|A0A2I4H6Q3\|A0A2I4H6Q3_9ROSI	7.3e-33	78.49	uncharacterized protein LOC109013992 OS=Juglans regia OX=51240 GN=LOC109013992 P...	[more]
tr\|A0A2N9HEJ5\|A0A2N9HEJ5_FAGSY	1.0e-31	76.34	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37982 PE=4 SV=1	[more]
tr\|A0A2P2JSA8\|A0A2P2JSA8_RHIMU	1.0e-31	60.77	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021495	DUF3148

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G012470.1	CsGy4G012470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021495	Protein of unknown function DUF3148	PFAM	PF11347	DUF3148	coord: 64..126 e-value: 3.2E-25 score: 87.6
IPR021495	Protein of unknown function DUF3148	PANTHER	PTHR36799	FAMILY NOT NAMED	coord: 27..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..55
None	No IPR available	PANTHER	PTHR36799:SF2	SUBFAMILY NOT NAMED	coord: 27..133

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G012470	Cla003160	Watermelon (97103) v1	cgybwmB323
CsGy4G012470	Csa4G279890	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G012470	MELO3C014688	Melon (DHL92) v3.5.1	cgybmeB249
CsGy4G012470	ClCG02G024060	Watermelon (Charleston Gray)	cgybwcgB272
CsGy4G012470	CSPI04G12910	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G012470	CmoCh20G000260	Cucurbita moschata (Rifu)	cgybcmoB493
CsGy4G012470	Lsi10G009610	Bottle gourd (USVL1VR-Ls)	cgyblsiB232
CsGy4G012470	Cp4.1LG16g09190	Cucurbita pepo (Zucchini)	cgybcpeB496
CsGy4G012470	MELO3C014688.2	Melon (DHL92) v3.6.1	cgybmedB247
CsGy4G012470	CsaV3_4G023270	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G012470	Cla97C02G050270	Watermelon (97103) v2	cgybwmbB273
CsGy4G012470	Bhi10G000354	Wax gourd	cgybwgoB373
CsGy4G012470	Carg06952	Silver-seed gourd	carcgybB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G012470	Cucurbita maxima (Rimu)	cgybcmaB525
CsGy4G012470	Cucurbita maxima (Rimu)	cgybcmaB522
CsGy4G012470	Cucurbita moschata (Rifu)	cgybcmoB496
CsGy4G012470	Cucurbita pepo (Zucchini)	cgybcpeB561
CsGy4G012470	Silver-seed gourd	carcgybB0909