CsaV3_4G023270 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G023270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionChlororespiratory reduction 42
Locationchr4 : 13537941 .. 13539368 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAATATAAGAAGATATCAAATTAAATACAATTAAACTTGCAACGTCAAAGATTAAATTCTAATAATTTAAACCTTTCGAATAGGTAGTTGCATATCATATTTTCGATGGGTTCATTTTTTTTTGTTCATATATCGTACAATTGATAAAAATACAAATTTGAAAAACAAATTAAATGAAAGAAAAAAAAAAACATATGATTAGATAGATAATTAGATCTAAAGTCTAAAGAAAATGGGTCCACCTTAACTATCGTTCTAACCACAACACCCGTTCCCAAATATAACATTGACTCGAAACATTGGTGATAAGATACGATTCCAATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGTCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGGTGATTACCCAATTGCCACTCGTCCTCTGTCTTTAACATTTCATCGAACACATTACGTGCATCGTTTTTCTTTTTTTGGTAACTAAGTACTGTCTGTTCCGTTGCTTTATCGTGTGTGATTGAACAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAACTTGTCCGGAGAGGCTTTCGATTTGAAGGTTCCGAGCTTACAAATTCACCTTTCATGGCGATTTCGTTGGAATGCGGCGTGTGTTTGAATCCATTTGTAGGAAATCATTCCGTTATCGTTGCATGTTGTTCAGATCACCCTCCATGTCTCTATCTTGATGCAGCAGATCGAATGCAGCTTGATTAGCCATGAATTTAGGAGTCTTATGTGCATAGTTTATTCCTTACGAATAAATTTTCGATTCTATAACATATATTTTATTGCAAATTTGTTATGCATCTTCGTGGAATTCACGATGAAACTCGAACCCTCAATCCCGTTTGATGGTTTCTTTGTTGCATGTTTCCATTGTATTTTAAGCATGGATATAATTTTTGGTTTACCATTATGTATTAATATATTAATATAGAGATCGGTTGGTTCAAATTAGCATGAAATTAAAAATAACTATGTACACATGGAGCAATATATGTGTATGAAATTAAAAGTAACTATATACATATGGAGCAAACATACGTGTTTGTGTGTCACGTCAAATTGTTTAAATATAGTTTTTTATTTATTGCCAG

mRNA sequence

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGTCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

Coding sequence (CDS)

ATGGCTGCTTATCTTCCTCCTACAACACCATTCTCGCGCCCCAACATTAGAATCCTCACTTCCATCTCTTCCTTCAACGTTTCCAACACTCTGACCACTCGTTCACAACCGCGAAGCATCGTGAAATGCGAATCCAGTGCATCGCCAGCAGACGGCCAGACGTCGCCGCCAAAAAGTCAGAAACTCGAGATCGGGTCCCCCGTTATCGTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAG

Protein sequence

MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ
BLAST of CsaV3_4G023270 vs. NCBI nr
Match: XP_004142251.1 (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hypothetical protein Csa_4G279890 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 1.5e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

BLAST of CsaV3_4G023270 vs. NCBI nr
Match: XP_008449832.1 (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 235.7 bits (600), Expect = 9.0e-59
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0

Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
           MAA   PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQT P KSQ
Sbjct: 1   MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

BLAST of CsaV3_4G023270 vs. NCBI nr
Match: XP_023513105.1 (uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 109/135 (80.74%), Postives = 117/135 (86.67%), Query Frame = 0

Query: 1   MAAYLPPTTPFSRPN--IRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPK 60
           MA  L   T   RP+  I I++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  T P K
Sbjct: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60

Query: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
           S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120

Query: 121 YLIDGRYFRALELDQ 134
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134

BLAST of CsaV3_4G023270 vs. NCBI nr
Match: XP_022944245.1 (uncharacterized protein LOC111448751 [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 109/135 (80.74%), Postives = 116/135 (85.93%), Query Frame = 0

Query: 1   MAAYLPPTTPFSRPN--IRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPK 60
           MA  L   T   RP+  I I++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  T P K
Sbjct: 1   MATSLSSATAIPRPSIGIGIVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAK 60

Query: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
           S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120

Query: 121 YLIDGRYFRALELDQ 134
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134

BLAST of CsaV3_4G023270 vs. NCBI nr
Match: XP_022985824.1 (uncharacterized protein LOC111483753 [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 3.2e-48
Identity = 108/135 (80.00%), Postives = 115/135 (85.19%), Query Frame = 0

Query: 1   MAAYLPPTTPFSRPN--IRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPK 60
           MA  L   T   RP+  I I+ SISSFN+SN+L+TRSQPRS VKCESSAS AD  T P K
Sbjct: 1   MATSLSSATAIPRPSIGIGIVNSISSFNISNSLSTRSQPRSFVKCESSASAAD-PTPPAK 60

Query: 61  SQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGT 120
           S+KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVW VRLKVGT
Sbjct: 61  SRKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGT 120

Query: 121 YLIDGRYFRALELDQ 134
           YLIDGRYFR LELDQ
Sbjct: 121 YLIDGRYFRPLELDQ 134

BLAST of CsaV3_4G023270 vs. TAIR10
Match: AT5G20935.1 (unknown protein)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-31
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 0

Query: 38  RSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGD 97
           R  V+C   A+ A     P    KL++GSP+I++EAPK+IKTAAS+PCLR NSG++ PGD
Sbjct: 14  RVSVRCCEIANEA-----PRPKSKLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGD 73

Query: 98  VGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELDQ 134
           VGRIVSRKPKD+WAVRL +GTYL+DG+YF+ALELD+
Sbjct: 74  VGRIVSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104

BLAST of CsaV3_4G023270 vs. TrEMBL
Match: tr|A0A0A0L1Q6|A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.0e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0

Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
           MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ
Sbjct: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

BLAST of CsaV3_4G023270 vs. TrEMBL
Match: tr|A0A1S3BMX2|A0A1S3BMX2_CUCME (uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.9e-59
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0

Query: 1   MAAYLPPTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQ 60
           MAA   PTTP SRP+IR LTSISSFNVSN L+TRSQPRSIVKCESSAS ADGQT P KSQ
Sbjct: 1   MAASFSPTTPISRPSIRTLTSISSFNVSNNLSTRSQPRSIVKCESSASAADGQTPPAKSQ 60

Query: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120
           KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL
Sbjct: 61  KLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYL 120

Query: 121 IDGRYFRALELDQ 134
           IDGRYFRALELDQ
Sbjct: 121 IDGRYFRALELDQ 133

BLAST of CsaV3_4G023270 vs. TrEMBL
Match: tr|M5WDH9|M5WDH9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G149700 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-32
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 0

Query: 25  FNVSNTLTTRSQPRSIVKCESSASPADGQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVP 84
           FN SNT   RS     VKC S+  PA G  S  +  KLEIGSP+IV+EAP+MIKTAASVP
Sbjct: 24  FNTSNTY-KRSPNAVSVKCASTEPPAAGAGSAGRKSKLEIGSPIIVVEAPRMIKTAASVP 83

Query: 85  CLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRALELD 133
           CLRVNSG++ PGDVGRIVSRKP DVWAVRL +GTYLIDG+YF+ LEL+
Sbjct: 84  CLRVNSGLVKPGDVGRIVSRKPMDVWAVRLSIGTYLIDGKYFKPLELE 130

BLAST of CsaV3_4G023270 vs. TrEMBL
Match: tr|A0A2I4H6Q3|A0A2I4H6Q3_9ROSI (uncharacterized protein LOC109013992 OS=Juglans regia OX=51240 GN=LOC109013992 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-32
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0

Query: 41  VKCESSASPAD-GQTSPPKSQKLEIGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVG 100
           VKCES  +PA+ G     KS KLEIGSP+IVIEAP MIKTAASVPCLRVNSG++ PGDVG
Sbjct: 48  VKCESKETPAEIGPLPAAKSSKLEIGSPIIVIEAPTMIKTAASVPCLRVNSGLVKPGDVG 107

Query: 101 RIVSRKPKDVWAVRLKVGTYLIDGRYFRALELD 133
           RIVSRKPKDVWAVRL +GTYLIDG+YF+ LELD
Sbjct: 108 RIVSRKPKDVWAVRLAIGTYLIDGKYFKPLELD 140

BLAST of CsaV3_4G023270 vs. TrEMBL
Match: tr|A0A2P2JSA8|A0A2P2JSA8_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-32
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 0

Query: 7   PTTPFSRPNIRILTSISSFNVSNTLTTRSQPRSIVKCESSASPADGQTSPP---KSQKLE 66
           PT P +RP   +L   S+ N S+    +     + KCES    A   T PP    S KLE
Sbjct: 9   PTIPPTRPRSPLL-QFSNSNASDRSFVK-----VTKCESQNPSASSNTGPPAKNSSAKLE 68

Query: 67  IGSPVIVIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDG 126
           IGSP+IVIEAPKMIKTAASVPCLRVN+G++  GDVGRIVSRKPKDVWAVRL +GTYLIDG
Sbjct: 69  IGSPIIVIEAPKMIKTAASVPCLRVNAGLVKAGDVGRIVSRKPKDVWAVRLSIGTYLIDG 128

Query: 127 RYFRALELDQ 134
           +YF+ LELD+
Sbjct: 129 KYFKPLELDK 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004142251.11.5e-66100.00PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus] >KGN54061.1 hy... [more]
XP_008449832.19.0e-5991.73PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo][more]
XP_023513105.11.1e-4880.74uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo][more]
XP_022944245.12.4e-4880.74uncharacterized protein LOC111448751 [Cucurbita moschata][more]
XP_022985824.13.2e-4880.00uncharacterized protein LOC111483753 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G20935.14.3e-3163.54unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L1Q6|A0A0A0L1Q6_CUCSA1.0e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279890 PE=4 SV=1[more]
tr|A0A1S3BMX2|A0A1S3BMX2_CUCME5.9e-5991.73uncharacterized protein LOC103491596 OS=Cucumis melo OX=3656 GN=LOC103491596 PE=... [more]
tr|M5WDH9|M5WDH9_PRUPE3.6e-3268.52Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G149700 PE=4 SV=1[more]
tr|A0A2I4H6Q3|A0A2I4H6Q3_9ROSI3.6e-3277.42uncharacterized protein LOC109013992 OS=Juglans regia OX=51240 GN=LOC109013992 P... [more]
tr|A0A2P2JSA8|A0A2P2JSA8_RHIMU3.6e-3260.77Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021495DUF3148
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0016556 mRNA modification
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G023270.1CsaV3_4G023270.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021495Protein of unknown function DUF3148PFAMPF11347DUF3148coord: 64..126
e-value: 3.2E-25
score: 87.6
IPR021495Protein of unknown function DUF3148PANTHERPTHR36799FAMILY NOT NAMEDcoord: 27..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..61
NoneNo IPR availablePANTHERPTHR36799:SF2SUBFAMILY NOT NAMEDcoord: 27..133