CU134272 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU134272
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Chlororespiratory reduction 42
Location	Chr4 : 10796805 .. 10797193 (-)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTAATCGAGGCTCCCAAGATGATAAAGACCGCAGCCTCAGTTCCATGTCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTCGGCAGAATCGTGTCGAGAAAACCTAAGGACGTGTGGGCCGTGCGGCTTAAGGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGAGCATTAGAACTCGATCAATAGCTTTAACTTGTCCGGAGAGGCTTTCGATTTGAAGGTTCCGAGCTTACAAATTCACCTTTCATGGCG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU134272 vs. TrEMBL
Match: A0A0A0L1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 9.5e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL
Sbjct: 70  VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 129

Query: 61  ELDQ 120
           ELDQ
Sbjct: 130 ELDQ 133

Query: 121  180
           
Sbjct: 190  133

Query: 181  193
           
Sbjct: 250  133

[Close]

BLAST of CU134272 vs. TrEMBL
Match: W9RP34_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-24
Identity = 53/64 (82.81%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           V+EAPKMIKTAASVPCLRVNSG++NPGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ L
Sbjct: 64  VVEAPKMIKTAASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKPL 123

Query: 61  ELDQ 120
           ++D+
Sbjct: 124 DVDK 127

Query: 121  180
           
Sbjct: 184  127

Query: 181  193
           
Sbjct: 244  127

[Close]

BLAST of CU134272 vs. TrEMBL
Match: A0A0F7J2C1_9ROSI (Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           V+EAP MIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ L
Sbjct: 74  VVEAPIMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKLL 133

Query: 61  ELDQ 120
           ELDQ
Sbjct: 134 ELDQ 137

Query: 121  180
           
Sbjct: 194  137

Query: 181  193
           
Sbjct: 254  137

[Close]

BLAST of CU134272 vs. TrEMBL
Match: A0A0D2SCG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G016000 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-23
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           V+EAPKMIKTAASVPCLR NSG++ PGDVGRIVSRKPKDVWAVRL +GTYL+DG+YF+AL
Sbjct: 52  VVEAPKMIKTAASVPCLRANSGLVKPGDVGRIVSRKPKDVWAVRLAIGTYLLDGKYFKAL 111

Query: 61  ELDQ 120
           E D+
Sbjct: 112 EFDE 115

Query: 121  180
           
Sbjct: 172  115

Query: 181  193
           
Sbjct: 232  115

[Close]

BLAST of CU134272 vs. TrEMBL
Match: A0A0F7J567_PELHO (Chlororespiratory reduction 42 OS=Pelargonium hortorum GN=crr42 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-23
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           V+EAP+MIKTAASVPCLRVNSG++NPGDVGRIVSRKP DVWAVRL +GTYLIDG+YF+ L
Sbjct: 61  VVEAPRMIKTAASVPCLRVNSGLVNPGDVGRIVSRKPMDVWAVRLAIGTYLIDGKYFKPL 120

Query: 61  ELDQ 120
           EL++
Sbjct: 121 ELEE 124

Query: 121  180
           
Sbjct: 181  124

Query: 181  193
           
Sbjct: 241  124

[Close]

BLAST of CU134272 vs. NCBI nr
Match: gi|449448996|ref|XP_004142251.1| (PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL
Sbjct: 70  VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 129

Query: 61  ELDQ 120
           ELDQ
Sbjct: 130 ELDQ 133

Query: 121  180
           
Sbjct: 190  133

Query: 181  193
           
Sbjct: 250  133

[Close]

BLAST of CU134272 vs. NCBI nr
Match: gi|659097820|ref|XP_008449832.1| (PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL
Sbjct: 70  VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 129

Query: 61  ELDQ 120
           ELDQ
Sbjct: 130 ELDQ 133

Query: 121  180
           
Sbjct: 190  133

Query: 181  193
           
Sbjct: 250  133

[Close]

BLAST of CU134272 vs. NCBI nr
Match: gi|703097269|ref|XP_010096070.1| (hypothetical protein L484_000626 [Morus notabilis])

HSP 1 Score: 121.3 bits (303), Expect = 8.2e-25
Identity = 53/64 (82.81%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           V+EAPKMIKTAASVPCLRVNSG++NPGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ L
Sbjct: 64  VVEAPKMIKTAASVPCLRVNSGLVNPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKPL 123

Query: 61  ELDQ 120
           ++D+
Sbjct: 124 DVDK 127

Query: 121  180
           
Sbjct: 184  127

Query: 181  193
           
Sbjct: 244  127

[Close]

BLAST of CU134272 vs. NCBI nr
Match: gi|821160374|gb|AKH05240.1| (chlororespiratory reduction 42 [Hypseocharis bilobata])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           V+EAP MIKTAASVPCLRVNSG++ PGDVGRIVSRKPKDVWAVRL +GTYLIDG+YF+ L
Sbjct: 74  VVEAPIMIKTAASVPCLRVNSGLVKPGDVGRIVSRKPKDVWAVRLSIGTYLIDGKYFKLL 133

Query: 61  ELDQ 120
           ELDQ
Sbjct: 134 ELDQ 137

Query: 121  180
           
Sbjct: 194  137

Query: 181  193
           
Sbjct: 254  137

[Close]

BLAST of CU134272 vs. NCBI nr
Match: gi|823182718|ref|XP_012488605.1| (PREDICTED: uncharacterized protein LOC105801837 isoform X1 [Gossypium raimondii])

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-24
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1   VIEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWAVRLKVGTYLIDGRYFRAL 60
           V+EAPKMIKTAASVPCLR NSG++ PGDVGRIVSRKPKDVWAVRL +GTYL+DG+YF+AL
Sbjct: 52  VVEAPKMIKTAASVPCLRANSGLVKPGDVGRIVSRKPKDVWAVRLAIGTYLLDGKYFKAL 111

Query: 61  ELDQ 120
           E D+
Sbjct: 112 EFDE 115

Query: 121  180
           
Sbjct: 172  115

Query: 181  193
           
Sbjct: 232  115

The following BLAST results are available for this feature:

BLAST of CU134272 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Q6_CUCSA	9.5e-28	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279890 PE=4 SV=1	[more]
W9RP34_9ROSA	3.7e-24	82.81	Uncharacterized protein OS=Morus notabilis GN=L484_000099 PE=4 SV=1	[more]
A0A0F7J2C1_9ROSI	1.1e-23	84.38	Chlororespiratory reduction 42 OS=Hypseocharis bilobata GN=crr42 PE=2 SV=1	[more]
A0A0D2SCG4_GOSRA	1.4e-23	81.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G016000 PE=4 SV=1	[more]
A0A0F7J567_PELHO	2.4e-23	81.25	Chlororespiratory reduction 42 OS=Pelargonium hortorum GN=crr42 PE=2 SV=1	[more]

BLAST of CU134272 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448996\|ref\|XP_004142251.1\|	2.1e-28	100.00	PREDICTED: uncharacterized protein LOC101219406 [Cucumis sativus]	[more]
gi\|659097820\|ref\|XP_008449832.1\|	2.1e-28	100.00	PREDICTED: uncharacterized protein LOC103491596 [Cucumis melo]	[more]
gi\|703097269\|ref\|XP_010096070.1\|	8.2e-25	82.81	hypothetical protein L484_000626 [Morus notabilis]	[more]
gi\|821160374\|gb\|AKH05240.1\|	2.4e-24	84.38	chlororespiratory reduction 42 [Hypseocharis bilobata]	[more]
gi\|823182718\|ref\|XP_012488605.1\|	3.1e-24	81.25	PREDICTED: uncharacterized protein LOC105801837 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR021495	DUF3148

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G279890	Csa4G279890	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OZCTQ	FKNP3UI02OZCTQ	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021495	Protein of unknown function DUF3148	PFAM	PF11347	DUF3148	coord: 1..57 score: 8.8
None	No IPR available	PANTHER	PTHR36799	FAMILY NOT NAMED	coord: 1..71 score: 1.6
None	No IPR available	PANTHER	PTHR36799:SF2	SUBFAMILY NOT NAMED	coord: 1..71 score: 1.6