Csa2G123040 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G123040
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 8235813 .. 8236491 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACAATTACAAAAATAAAATAAAAATAAAAAAACCAAAAACCTCTGTTTTTCTTCAAAGAAAGCAAAAAAGGAAATGGATGGTTTGATTCCATTGTTCTACAGAGCGATGAAGAAAAATAGAAGGAGAAGGCAGTATACAGTGCTTTCCACAAAAGCAGAATCAGAAGCAGAAACGGAAGCAGCTTCTTTATCTTTCAACATTGCTGATTTCTATGTGGATCCCCCTTCAATCAAATCTGAGGGCAGGGCTTACCGGAGATACAACTCATACGCCGGATCTACCACTCAGGAGTGGCGGAGGAGTGGCGTAGCCGCCGGGAAGTCAAGTAGTCATGGGCCACCACCGGAACAACAGCTTGTGAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGCCATTAAAATTTGTAAGGGCTTATTCTTCCAAACTTAAGATTAATGGATGTGTACAGCATAATTATTATTCATCTTCAAACCATACTTGATGTTGATACTCTTCAAAGCTTCTGCTTTAATTCAAATTTTGTGCTTTTCTTTTTGGTTGTTGTTATGTATTGCAAAGTTGGTCAAATGGAGATTGGTGGACAAAGTTATGTTATTTGACTTCTTGTGATTCATGAGCTGTAATGAGAAATAATCAAATAAATCAACAACCCATTACTCTACTTTTGT

mRNA sequence

ATGGATGGTTTGATTCCATTGTTCTACAGAGCGATGAAGAAAAATAGAAGGAGAAGGCAGTATACAGTGCTTTCCACAAAAGCAGAATCAGAAGCAGAAACGGAAGCAGCTTCTTTATCTTTCAACATTGCTGATTTCTATGTGGATCCCCCTTCAATCAAATCTGAGGGCAGGGCTTACCGGAGATACAACTCATACGCCGGATCTACCACTCAGGAGTGGCGGAGGAGTGGCGTAGCCGCCGGGAAGTCAAGTAGTCATGGGCCACCACCGGAACAACAGCTTGTGAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGCCATTAA

Coding sequence (CDS)

ATGGATGGTTTGATTCCATTGTTCTACAGAGCGATGAAGAAAAATAGAAGGAGAAGGCAGTATACAGTGCTTTCCACAAAAGCAGAATCAGAAGCAGAAACGGAAGCAGCTTCTTTATCTTTCAACATTGCTGATTTCTATGTGGATCCCCCTTCAATCAAATCTGAGGGCAGGGCTTACCGGAGATACAACTCATACGCCGGATCTACCACTCAGGAGTGGCGGAGGAGTGGCGTAGCCGCCGGGAAGTCAAGTAGTCATGGGCCACCACCGGAACAACAGCTTGTGAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGCCATTAA

Protein sequence

MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH*

Homology

[Close]

BLAST of Csa2G123040 vs. TrEMBL
Match: A0A0A0LL24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123040 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60

Query: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 111
           RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH
Sbjct: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 110

[Close]

BLAST of Csa2G123040 vs. TrEMBL
Match: B9T533_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211550 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVD--------PPS 60
           M+GL+PL Y+A+K+NR RRQY  LS+          A+ ++N ADFY+         P S
Sbjct: 1   MEGLLPLVYKAIKRNRTRRQYECLSS---------GAAFAYNPADFYISDAETTYTKPSS 60

Query: 61  IKSE------GRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSC 110
           I  E      GR+     SY  S+ ++   +G ++ + ++   PP +QLVRFRSQR+ SC
Sbjct: 61  IIMEKNNAGTGRSKLHRRSY--SSVEDLSVTG-SSRRRTAGASPPRKQLVRFRSQRMFSC 111

[Close]

BLAST of Csa2G123040 vs. TrEMBL
Match: V4TZC8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022922mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 49/125 (39.20%), Postives = 63/125 (50.40%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADF-----------YVD 60
           MDGLIP+ ++A+KKN+ RRQY  LS+          A+ S+N ADF           YV 
Sbjct: 1   MDGLIPMVFKAIKKNKTRRQYECLSS---------GAAQSYNAADFNSNIIAHQNSMYVT 60

Query: 61  PPSIKSE-GRAYRRYNS----YAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRIL 110
               K E G  +RR+ S    YAG +       G   G      PP  +QLVRFRS R+ 
Sbjct: 61  RSGEKMEPGHGHRRHKSVGDFYAGYSVA--NGGGFGGGGGGGSPPPRAKQLVRFRSHRMF 114

[Close]

BLAST of Csa2G123040 vs. TrEMBL
Match: A0A061EPK1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021536 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-09
Identity = 45/123 (36.59%), Postives = 64/123 (52.03%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPS-------- 60
           M+GLIPL YR +KKN+ RRQY  LS+          A+ ++NIADF VD  S        
Sbjct: 1   MEGLIPLVYRTLKKNKTRRQYQCLSS---------GAAQTYNIADFDVDGQSPVCMKPST 60

Query: 61  ------IKSEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSC 110
                 +K++   +RR+ S    + +     G+  G S +   PP  +L RFRS R+ SC
Sbjct: 61  AEKSCGLKTQRNGHRRHVSMGDFSMRYSSADGMKTGASPT---PPAPKLKRFRSHRMFSC 111

[Close]

BLAST of Csa2G123040 vs. TrEMBL
Match: R0HT61_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024778mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIP+ Y+AMKKN  RR+Y  LS+  ++    E           +V    +  +G   
Sbjct: 1   MDGLIPMAYKAMKKNLTRRRYERLSSSTKTRESYE-----------FVSDMEMNVDGHHR 60

Query: 61  RRYNSYAGSTTQEW---RRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 110
           RR++    S+   W   R  GVA  K  +  PP E QLVRF+S R+ SC++G
Sbjct: 61  RRWSMGDFSSLSSWETKRNGGVAPEKGFT--PPREGQLVRFKSHRLFSCISG 99

[Close]

BLAST of Csa2G123040 vs. TAIR10
Match: AT2G44010.1 (AT2G44010.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAES-EAETEAASLSFNIADFYVDPPSIKSEGRA 60
           MDGLIP+  +A+KKN  RR+Y  LS  A + E+   A+ +  N+            +GR 
Sbjct: 1   MDGLIPMALKAVKKNLTRRRYERLSYSATTRESYDFASDIEMNV------------DGRH 60

Query: 61  YRR---YNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 110
           +RR      ++  +++E +R+G  A + S   PP E QLVRF+S R+ SC++G
Sbjct: 61  HRRGWSVGDFSSLSSRETKRNGGVAPEKSL-TPPREGQLVRFKSHRLFSCISG 100

[Close]

BLAST of Csa2G123040 vs. TAIR10
Match: AT3G59880.1 (AT3G59880.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 38/125 (30.40%), Postives = 67/125 (53.60%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAES-------------EAETEAASLSFNIADF- 60
           MDGLIP+ ++AM+KNR R++Y  LS+ A +              A+++ + +S   + F 
Sbjct: 1   MDGLIPMAFKAMRKNRTRKRYECLSSSAGTTKDSYDDSDFFPFAAKSDHSVVSRPSSSFD 60

Query: 61  YVDPPSIKSEGRAYRRYN--SYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRIL 110
           +++  ++  + R +R ++   ++  + +E +RSGV  G      P    QLVR RS R+ 
Sbjct: 61  HIEMNNVDVQQRHHRGWSVGDFSSMSCREGKRSGVDGG-DIGFSPSRRGQLVRNRSHRLF 120

[Close]

BLAST of Csa2G123040 vs. NCBI nr
Match: gi|449442349|ref|XP_004138944.1| (PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60

Query: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 111
           RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH
Sbjct: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 110

[Close]

BLAST of Csa2G123040 vs. NCBI nr
Match: gi|659082088|ref|XP_008441665.1| (PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 6.5e-51
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIP+FYRAMKKNRRRRQYTVLSTKAESE+E EAASLSFNIADFYVDPPSIKSEGR Y
Sbjct: 1   MDGLIPMFYRAMKKNRRRRQYTVLSTKAESESEGEAASLSFNIADFYVDPPSIKSEGRGY 60

Query: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 111
           RRYNSY GST QEWRRSGVAAGKS SHG PPEQQLVRFRSQRILSCLTGH
Sbjct: 61  RRYNSYGGSTPQEWRRSGVAAGKSRSHGQPPEQQLVRFRSQRILSCLTGH 110

[Close]

BLAST of Csa2G123040 vs. NCBI nr
Match: gi|255585307|ref|XP_002533352.1| (PREDICTED: uncharacterized protein LOC8261699 [Ricinus communis])

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVD--------PPS 60
           M+GL+PL Y+A+K+NR RRQY  LS+          A+ ++N ADFY+         P S
Sbjct: 1   MEGLLPLVYKAIKRNRTRRQYECLSS---------GAAFAYNPADFYISDAETTYTKPSS 60

Query: 61  IKSE------GRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSC 110
           I  E      GR+     SY  S+ ++   +G ++ + ++   PP +QLVRFRSQR+ SC
Sbjct: 61  IIMEKNNAGTGRSKLHRRSY--SSVEDLSVTG-SSRRRTAGASPPRKQLVRFRSQRMFSC 111

[Close]

BLAST of Csa2G123040 vs. NCBI nr
Match: gi|567899076|ref|XP_006442026.1| (hypothetical protein CICLE_v10022922mg [Citrus clementina])

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 49/125 (39.20%), Postives = 63/125 (50.40%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADF-----------YVD 60
           MDGLIP+ ++A+KKN+ RRQY  LS+          A+ S+N ADF           YV 
Sbjct: 1   MDGLIPMVFKAIKKNKTRRQYECLSS---------GAAQSYNAADFNSNIIAHQNSMYVT 60

Query: 61  PPSIKSE-GRAYRRYNS----YAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRIL 110
               K E G  +RR+ S    YAG +       G   G      PP  +QLVRFRS R+ 
Sbjct: 61  RSGEKMEPGHGHRRHKSVGDFYAGYSVA--NGGGFGGGGGGGSPPPRAKQLVRFRSHRMF 114

[Close]

BLAST of Csa2G123040 vs. NCBI nr
Match: gi|590627599|ref|XP_007026483.1| (Uncharacterized protein TCM_021536 [Theobroma cacao])

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-09
Identity = 45/123 (36.59%), Postives = 64/123 (52.03%), Query Frame = 1


Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPS-------- 60
           M+GLIPL YR +KKN+ RRQY  LS+          A+ ++NIADF VD  S        
Sbjct: 1   MEGLIPLVYRTLKKNKTRRQYQCLSS---------GAAQTYNIADFDVDGQSPVCMKPST 60

Query: 61  ------IKSEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSC 110
                 +K++   +RR+ S    + +     G+  G S +   PP  +L RFRS R+ SC
Sbjct: 61  AEKSCGLKTQRNGHRRHVSMGDFSMRYSSADGMKTGASPT---PPAPKLKRFRSHRMFSC 111

The following BLAST results are available for this feature:

BLAST of Csa2G123040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL24_CUCSA	1.4e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123040 PE=4 SV=1	[more]
B9T533_RICCO	1.1e-09	38.21	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211550 PE=4 SV=1	[more]
V4TZC8_9ROSI	1.9e-09	39.20	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022922mg PE=4 SV=1	[more]
A0A061EPK1_THECC	4.3e-09	36.59	Uncharacterized protein OS=Theobroma cacao GN=TCM_021536 PE=4 SV=1	[more]
R0HT61_9BRAS	2.1e-08	37.50	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024778mg PE=4 SV=1	[more]

BLAST of Csa2G123040 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44010.1	3.5e-10	36.28	unknown protein	[more]
AT3G59880.1	1.5e-08	30.40	unknown protein	[more]

BLAST of Csa2G123040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442349\|ref\|XP_004138944.1\|	2.0e-55	100.00	PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus]	[more]
gi\|659082088\|ref\|XP_008441665.1\|	6.5e-51	92.73	PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo]	[more]
gi\|255585307\|ref\|XP_002533352.1\|	1.6e-09	38.21	PREDICTED: uncharacterized protein LOC8261699 [Ricinus communis]	[more]
gi\|567899076\|ref\|XP_006442026.1\|	2.8e-09	39.20	hypothetical protein CICLE_v10022922mg [Citrus clementina]	[more]
gi\|590627599\|ref\|XP_007026483.1\|	6.2e-09	36.59	Uncharacterized protein TCM_021536 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU089123	cucumber EST collection version 3.0	transcribed_cluster
CU101809	cucumber EST collection version 3.0	transcribed_cluster
CU126364	cucumber EST collection version 3.0	transcribed_cluster
CU160843	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G123040.1	Csa2G123040.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU126364	CU126364	transcribed_cluster
CU089123	CU089123	transcribed_cluster
CU101809	CU101809	transcribed_cluster
CU160843	CU160843	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35485	FAMILY NOT NAMED	coord: 2..110 score: 2.5
None	No IPR available	PANTHER	PTHR35485:SF1	EXPRESSED PROTEIN	coord: 2..110 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G123040	Cla000856	Watermelon (97103) v1	cuwmB177
Csa2G123040	MELO3C008506	Melon (DHL92) v3.5.1	cumeB143
Csa2G123040	ClCG06G009780	Watermelon (Charleston Gray)	cuwcgB151
Csa2G123040	Lsi09G010090	Bottle gourd (USVL1VR-Ls)	culsiB092
Csa2G123040	MELO3C008506.2	Melon (DHL92) v3.6.1	cumedB126
Csa2G123040	Cla97C06G119300	Watermelon (97103) v2	cuwmbB145
Csa2G123040	Bhi12G001187	Wax gourd	cuwgoB124
Csa2G123040	CSPI02G08860	Wild cucumber (PI 183967)	cpicuB065
Csa2G123040	Cucsa.266140	Cucumber (Gy14) v1	cgycuB382
Csa2G123040	CmaCh15G014430	Cucurbita maxima (Rimu)	cmacuB279
Csa2G123040	CmoCh15G015220	Cucurbita moschata (Rifu)	cmocuB266
Csa2G123040	Cp4.1LG13g00020	Cucurbita pepo (Zucchini)	cpecuB166
Csa2G123040	CsGy2G009140	Cucumber (Gy14) v2	cgybcuB056
Csa2G123040	Carg20736	Silver-seed gourd	carcuB0755
Csa2G123040	Carg19743	Silver-seed gourd	carcuB0869

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G123040	Cucurbita moschata (Rifu)	cmocuB340
Csa2G123040	Cucurbita pepo (Zucchini)	cpecuB128
Csa2G123040	Bottle gourd (USVL1VR-Ls)	culsiB091