Cla000856 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000856
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 17103659 .. 17104000 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTTTGATTCCAATGTTCTACAGAGCAATGAAGAAAAATAGAAAGAGAAGGCAATATTCAGTGCTTTCCCCAGAAGCAGAAGCAAAAGCAGAAGCACAAGCTTCTCTATCTTTTAACATTGCTGATTTCTACGTGGATCCGCCTTCCAGCCATGTCTTTCCCAATTCAAACTCCGACGCCAGGGCTCCCCGGAGATACAACTCATTCGGCGGGTCTACGCCTCAGGACTGGCGGAGGAGTCGCGGAGCCGCCGGGAAGTCCAGTCATGGGCCATCGTCGCAGCAGCTTGTTAGGTTCAGAAGCCAGCGGATTCTGTCGTGCTTGATTGGGCAGTGA

mRNA sequence

ATGGAGGGTTTGATTCCAATGTTCTACAGAGCAATGAAGAAAAATAGAAAGAGAAGGCAATATTCAGTGCTTTCCCCAGAAGCAGAAGCAAAAGCAGAAGCACAAGCTTCTCTATCTTTTAACATTGCTGATTTCTACGTGGATCCGCCTTCCAGCCATGTCTTTCCCAATTCAAACTCCGACGCCAGGGCTCCCCGGAGATACAACTCATTCGGCGGGTCTACGCCTCAGGACTGGCGGAGGAGTCGCGGAGCCGCCGGGAAGTCCAGTCATGGGCCATCGTCGCAGCAGCTTGTTAGGTTCAGAAGCCAGCGGATTCTGTCGTGCTTGATTGGGCAGTGA

Coding sequence (CDS)

ATGGAGGGTTTGATTCCAATGTTCTACAGAGCAATGAAGAAAAATAGAAAGAGAAGGCAATATTCAGTGCTTTCCCCAGAAGCAGAAGCAAAAGCAGAAGCACAAGCTTCTCTATCTTTTAACATTGCTGATTTCTACGTGGATCCGCCTTCCAGCCATGTCTTTCCCAATTCAAACTCCGACGCCAGGGCTCCCCGGAGATACAACTCATTCGGCGGGTCTACGCCTCAGGACTGGCGGAGGAGTCGCGGAGCCGCCGGGAAGTCCAGTCATGGGCCATCGTCGCAGCAGCTTGTTAGGTTCAGAAGCCAGCGGATTCTGTCGTGCTTGATTGGGCAGTGA

Protein sequence

MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQASLSFNIADFYVDPPSSHVFPNSNSDARAPRRYNSFGGSTPQDWRRSRGAAGKSSHGPSSQQLVRFRSQRILSCLIGQ

Homology

[Close]

BLAST of Cla000856 vs. TrEMBL
Match: A0A0A0LL24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123040 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.7e-33
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQ-ASLSFNIADFYVDPPSSHVFPNSN 60
           M+GLIP+FYRAMKKNR+RRQY+VLS +AE++AE + ASLSFNIADFYVDPPS        
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPS------IK 60

Query: 61  SDARAPRRYNSFGGSTPQDWRRSRGAAGK-SSHG-PSSQQLVRFRSQRILSCLIG 113
           S+ RA RRYNS+ GST Q+WRRS  AAGK SSHG P  QQLVRFRSQRILSCL G
Sbjct: 61  SEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 109

[Close]

BLAST of Cla000856 vs. TrEMBL
Match: A0A0D2RMK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G213700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.8e-09
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQASLSFNIADFYVDPPSSHVFPNSNS 60
           MEGLIP+ YR +KK + RRQY  LS        + A+ S++I++FYV  PS ++ PN+ S
Sbjct: 1   MEGLIPLVYRRLKKAKTRRQYECLS--------SGAAKSYDISEFYVQSPSQYMKPNNTS 60

Query: 61  DA------RAPRRYNSFGGSTPQDWRRSRGAAGKSSHGPSSQQLVRFRSQRILSCLIG 113
            A      +  RR  S G  +  D     G     S  P+  +L RFRS R+ SC+ G
Sbjct: 61  MAEKNIGGQGHRRRMSTGDISGMD-----GMETGESTTPAVAKLTRFRSHRMFSCVTG 105

[Close]

BLAST of Cla000856 vs. TrEMBL
Match: B9T533_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211550 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQASLSFNIADFYVD-------PPSSH 60
           MEGL+P+ Y+A+K+NR RRQY  LS        + A+ ++N ADFY+         PSS 
Sbjct: 1   MEGLLPLVYKAIKRNRTRRQYECLS--------SGAAFAYNPADFYISDAETTYTKPSSI 60

Query: 61  VFPNSNSDARAP----RRYNSFG--GSTPQDWRRSRGAAGKSSHGPSSQQLVRFRSQRIL 113
           +   +N+         R Y+S      T    RR+ GA+      P  +QLVRFRSQR+ 
Sbjct: 61  IMEKNNAGTGRSKLHRRSYSSVEDLSVTGSSRRRTAGAS------PPRKQLVRFRSQRMF 111

[Close]

BLAST of Cla000856 vs. TrEMBL
Match: A0A0B2PPV7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_011967 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQASLSFNIADFYVDPPS-SHVFPN-- 60
           MEGL+P+ Y+A+K+N+ RRQY  LS        +  SL +NI+   + P +  HV  N  
Sbjct: 1   MEGLLPLVYKAIKRNKTRRQYECLS--------SGTSLGYNISMAEMYPQTQEHVLQNQT 60

Query: 61  ----------SNSDARAPRRYNSFGGSTPQDWRRSRGAAGKSSHGPSSQQLVRFRSQRIL 113
                     + S     RRYNS G      ++ S+   G  +  PSS +LVRFRSQR+ 
Sbjct: 61  HAQKVFHHHHNESHKIGHRRYNSVGDHFDYGFQSSQMRTGVDA--PSSNKLVRFRSQRMF 115

[Close]

BLAST of Cla000856 vs. TrEMBL
Match: C6T3F5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G162400 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQASLSFNIADFYVDPPS-SHVFPN-- 60
           MEGL+P+ Y+A+K+N+ RRQY  LS        +  SL +NI+   + P +  HV  N  
Sbjct: 1   MEGLLPLVYKAIKRNKTRRQYECLS--------SGTSLGYNISMAEMYPQTQEHVLQNQT 60

Query: 61  ----------SNSDARAPRRYNSFGGSTPQDWRRSRGAAGKSSHGPSSQQLVRFRSQRIL 113
                     + S     RRYNS G      ++ S+   G  +  PSS +LVRFRSQR+ 
Sbjct: 61  HAQKVFHHHHNESHKIGHRRYNSVGDHFDYGFQSSQMRTGVDA--PSSNKLVRFRSQRMF 115

[Close]

BLAST of Cla000856 vs. NCBI nr
Match: gi|659082088|ref|XP_008441665.1| (PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-34
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQ-ASLSFNIADFYVDPPSSHVFPNSN 60
           M+GLIPMFYRAMKKNR+RRQY+VLS +AE+++E + ASLSFNIADFYVDPPS        
Sbjct: 1   MDGLIPMFYRAMKKNRRRRQYTVLSTKAESESEGEAASLSFNIADFYVDPPS------IK 60

Query: 61  SDARAPRRYNSFGGSTPQDWRRSRGAAGKS-SHG-PSSQQLVRFRSQRILSCLIG 113
           S+ R  RRYNS+GGSTPQ+WRRS  AAGKS SHG P  QQLVRFRSQRILSCL G
Sbjct: 61  SEGRGYRRYNSYGGSTPQEWRRSGVAAGKSRSHGQPPEQQLVRFRSQRILSCLTG 109

[Close]

BLAST of Cla000856 vs. NCBI nr
Match: gi|449442349|ref|XP_004138944.1| (PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 8.2e-33
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQ-ASLSFNIADFYVDPPSSHVFPNSN 60
           M+GLIP+FYRAMKKNR+RRQY+VLS +AE++AE + ASLSFNIADFYVDPPS        
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPS------IK 60

Query: 61  SDARAPRRYNSFGGSTPQDWRRSRGAAGK-SSHG-PSSQQLVRFRSQRILSCLIG 113
           S+ RA RRYNS+ GST Q+WRRS  AAGK SSHG P  QQLVRFRSQRILSCL G
Sbjct: 61  SEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 109

[Close]

BLAST of Cla000856 vs. NCBI nr
Match: gi|694380226|ref|XP_009366259.1| (PREDICTED: uncharacterized protein LOC103956047 [Pyrus x bretschneideri])

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-09
Identity = 56/156 (35.90%), Postives = 76/156 (48.72%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAE----AQASLSFNIADFYVDPPSSHVF- 60
           MEGLIPM Y+AMK+NR RRQYS LS  +   A     +  + ++NIADFY+D  +S+V+ 
Sbjct: 1   MEGLIPMVYKAMKRNRTRRQYSCLSSSSSLAAAPPPVSGQTSNYNIADFYID-HNSYVYV 60

Query: 61  --PNSNSDARAPRRYNSFGGSTPQD-------------------WRR----SRGAAGKSS 113
             P  ++D   P  +N  G S+P+D                    RR    S G+A  S 
Sbjct: 61  PQPAPSADHHLPTIFNVNGASSPRDQSSLSTTTNIINHGGRQFQHRRHKSVSLGSASNSM 120

[Close]

BLAST of Cla000856 vs. NCBI nr
Match: gi|823177351|ref|XP_012486760.1| (PREDICTED: uncharacterized protein LOC105800280 [Gossypium raimondii])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQASLSFNIADFYVDPPSSHVFPNSNS 60
           MEGLIP+ YR +KK + RRQY  LS        + A+ S++I++FYV  PS ++ PN+ S
Sbjct: 1   MEGLIPLVYRRLKKAKTRRQYECLS--------SGAAKSYDISEFYVQSPSQYMKPNNTS 60

Query: 61  DA------RAPRRYNSFGGSTPQDWRRSRGAAGKSSHGPSSQQLVRFRSQRILSCLIG 113
            A      +  RR  S G  +  D     G     S  P+  +L RFRS R+ SC+ G
Sbjct: 61  MAEKNIGGQGHRRRMSTGDISGMD-----GMETGESTTPAVAKLTRFRSHRMFSCVTG 105

[Close]

BLAST of Cla000856 vs. NCBI nr
Match: gi|255585307|ref|XP_002533352.1| (PREDICTED: uncharacterized protein LOC8261699 [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1


Query: 1   MEGLIPMFYRAMKKNRKRRQYSVLSPEAEAKAEAQASLSFNIADFYVD-------PPSSH 60
           MEGL+P+ Y+A+K+NR RRQY  LS        + A+ ++N ADFY+         PSS 
Sbjct: 1   MEGLLPLVYKAIKRNRTRRQYECLS--------SGAAFAYNPADFYISDAETTYTKPSSI 60

Query: 61  VFPNSNSDARAP----RRYNSFG--GSTPQDWRRSRGAAGKSSHGPSSQQLVRFRSQRIL 113
           +   +N+         R Y+S      T    RR+ GA+      P  +QLVRFRSQR+ 
Sbjct: 61  IMEKNNAGTGRSKLHRRSYSSVEDLSVTGSSRRRTAGAS------PPRKQLVRFRSQRMF 111

The following BLAST results are available for this feature:

BLAST of Cla000856 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL24_CUCSA	5.7e-33	71.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123040 PE=4 SV=1	[more]
A0A0D2RMK6_GOSRA	9.8e-09	38.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G213700 PE=4 SV=1	[more]
B9T533_RICCO	1.7e-08	37.60	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211550 PE=4 SV=1	[more]
A0A0B2PPV7_GLYSO	2.2e-08	36.80	Uncharacterized protein OS=Glycine soja GN=glysoja_011967 PE=4 SV=1	[more]
C6T3F5_SOYBN	2.2e-08	36.80	Uncharacterized protein OS=Glycine max GN=GLYMA_06G162400 PE=2 SV=1	[more]

BLAST of Cla000856 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082088\|ref\|XP_008441665.1\|	5.7e-34	72.17	PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo]	[more]
gi\|449442349\|ref\|XP_004138944.1\|	8.2e-33	71.30	PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus]	[more]
gi\|694380226\|ref\|XP_009366259.1\|	6.3e-09	35.90	PREDICTED: uncharacterized protein LOC103956047 [Pyrus x bretschneideri]	[more]
gi\|823177351\|ref\|XP_012486760.1\|	1.4e-08	38.14	PREDICTED: uncharacterized protein LOC105800280 [Gossypium raimondii]	[more]
gi\|255585307\|ref\|XP_002533352.1\|	2.4e-08	37.60	PREDICTED: uncharacterized protein LOC8261699 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0005978	glycogen biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008878	glucose-1-phosphate adenylyltransferase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000856	Cla000856.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35485	FAMILY NOT NAMED	coord: 2..113 score: 7.6
None	No IPR available	PANTHER	PTHR35485:SF1	EXPRESSED PROTEIN	coord: 2..113 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla000856	Cla97C06G119300	Watermelon (97103) v2	wmwmbB410
Cla000856	Csa2G123040	Cucumber (Chinese Long) v2	cuwmB177
Cla000856	MELO3C008506	Melon (DHL92) v3.5.1	mewmB442
Cla000856	ClCG06G009780	Watermelon (Charleston Gray)	wcgwmB349
Cla000856	CSPI02G08860	Wild cucumber (PI 183967)	cpiwmB181
Cla000856	Cucsa.266140	Cucumber (Gy14) v1	cgywmB491
Cla000856	CmaCh15G014430	Cucurbita maxima (Rimu)	cmawmB289
Cla000856	CmoCh15G015220	Cucurbita moschata (Rifu)	cmowmB281
Cla000856	Cp4.1LG13g00020	Cucurbita pepo (Zucchini)	cpewmB199
Cla000856	CsGy2G009140	Cucumber (Gy14) v2	cgybwmB168
Cla000856	MELO3C008506.2	Melon (DHL92) v3.6.1	medwmB429
Cla000856	CsaV3_2G011240	Cucumber (Chinese Long) v3	cucwmB189
Cla000856	Bhi12G001187	Wax gourd	wgowmB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000856	Watermelon (Charleston Gray)	wcgwmB344
Cla000856	Watermelon (97103) v2	wmwmbB406