CsaV3_2G011240 (gene) Cucumber (Chinese Long) v3

NameCsaV3_2G011240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA-binding protein
Locationchr2 : 8504769 .. 8506844 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAAGCATGAAGTGATTTAGGTGAATTCCACCAAAAAGGAAAAGGAAAGTCAGTCAGCTGATGGCTTTGTTTTAATTATTGCATTCAAAATAAGTAAAAATAAAAATTCAGAATGACGTGTAGGACTTAGTTTCCCCAACAAGGAATGAATTTGCATCTAAAATAAAATAAAGAAACAAACAAGAAATTGCATAGTGGTCAGGTCAGTACCCAATTAAATATATACCCCAAAACCAAACCCAACCAAACACACCTTTCAATACAATTACAAAAATAAAATAAAAATAAAAAAACCAAAAACCTCTGTTTTTCTTCAAAGAAAGCAAAAAAGGAAATGGATGGTTTGATTCCATTGTTCTACAGAGCGATGAAGAAAAATAGAAGGAGAAGGCAGTATACAGTGCTTTCCACAAAAGCAGAATCAGAAGCAGAAACGGAAGCAGCTTCTTTATCTTTCAACATTGCTGATTTCTATGTGGATCCCCCTTCAATCAAATCTGAGGGCAGGGCTTACCGGAGATACAACTCATACGCCGGATCTACCACTCAGGAGTGGCGGAGGAGTGGCGTAGCCGCCGGGAAGTCAAGTAGTCATGGGCCACCACCGGAACAACAGCTTGTGAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGCCATTAAAATTTGTAAGGGCTTATTCTTCCAAACTTAAGATTAATGGATGTGTACAGCATAATTATTATTCATCTTCAAACCATACTTGATGTTGATACTCTTCAAAGCTTCTGCTTTAATTCAAATTTTGTGCTTTTCTTTTTGGTTGTTGTTATGTATTGCAAAGTTGGTCAAATGGAGATTGGTGGACAAAGTTATGTTATTTGACTTCTTGTGATTCATGAGCTGTAATGAGAAATAATCAAATAAATCAACAACCCATTACTCTACTTTTGTTTTATTCATCTTGTCTAAGTTCTTCCTCTTTTTTCCTTTTTTAAATTTTATTCATCTTGTCTAAGTTCTTCCTCTTTTTTCCTTTTTTAAATATTTCCTTGCCTTCTAAACCCATCTTTATTACTAATATGGTTTTATAACTTTTTTTTATAAACTAATATTTTCAACATGATAATGCTTTCAACTATAATTCTCAAACTTATTAGTAGCATTCATTTTTAGAATTCTTATTACTTTTTATTTCTATTTCCACCCCTACGAAATTTGAATTTAATAATAAATTTTGGTAAAAGTTTTCTGCATATTTTGGGTCCTTAAAGTGGTTCTAAAGTTAGAGTCATTTATAACACATTGGAACAAAAAAAATGTTATTAAAATTGTTTATATGACACTTATTTAATGTCGCTTGTGAAGTGATCTTGACCTTTAGCAACTATCACTGTTAATTTAGATTTGGACACAATGTATTTGTCATTGTTTAGGTTCAAATTGGTTTGTTTGTGTAACTTTTTTTCTAGTTGGCAACACCTTTTTAGTGTCATTTCATTTCATATCACATTATGATTTAACAATCATGTCAATGCTAAATTCTACGCTATTGTCTTCTCAATAAAATCCAAATTTTGATTATCAACATGTGTGCTTACATTGTCATTTTCATATAATTTAAAGAATGAAGTAGTCATATAAAAATAAAATTTGTACAAATATAAATTTCAACTTATATACATATGAACAAAGTTGATAACATTTTAACAAAGAAACTGTCGAACATCCCCAAACGGGCAAATACAAGCAAACTACTTGTAACGTCTCGAGTTTAGGAGGAGAGACATAAATGAACCGGTATCACATCTGAATGAGAGATATCTTGAGGACATGAAAGTAAGGTTAAGAAAGACTTAAAAGGAGTTTTAAAGTTTCTATATATACCAACAAGGTGTACATTTCTTTTCAGTGGCTCAATCATAGAAACTCCAAAGTCAAGCGTGTTTAGCTTAGAGCAATTTTATGTTGGGTGACCTTCAGAGAATTTTTCGAATATGCATGTGAGTGAGAACAAAACATGCTTAAAGGACTCATATGTTGGTTTGTCAAGATGATTTCCACTCTAATAAACCTTTGAGACAAGTAAGAAT

mRNA sequence

ATGGATGGTTTGATTCCATTGTTCTACAGAGCGATGAAGAAAAATAGAAGGAGAAGGCAGTATACAGTGCTTTCCACAAAAGCAGAATCAGAAGCAGAAACGGAAGCAGCTTCTTTATCTTTCAACATTGCTGATTTCTATGTGGATCCCCCTTCAATCAAATCTGAGGGCAGGGCTTACCGGAGATACAACTCATACGCCGGATCTACCACTCAGGAGTGGCGGAGGAGTGGCGTAGCCGCCGGGAAGTCAAGTAGTCATGGGCCACCACCGGAACAACAGCTTGTGAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGCCATTAA

Coding sequence (CDS)

ATGGATGGTTTGATTCCATTGTTCTACAGAGCGATGAAGAAAAATAGAAGGAGAAGGCAGTATACAGTGCTTTCCACAAAAGCAGAATCAGAAGCAGAAACGGAAGCAGCTTCTTTATCTTTCAACATTGCTGATTTCTATGTGGATCCCCCTTCAATCAAATCTGAGGGCAGGGCTTACCGGAGATACAACTCATACGCCGGATCTACCACTCAGGAGTGGCGGAGGAGTGGCGTAGCCGCCGGGAAGTCAAGTAGTCATGGGCCACCACCGGAACAACAGCTTGTGAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGCCATTAA

Protein sequence

MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH
BLAST of CsaV3_2G011240 vs. NCBI nr
Match: XP_004138944.1 (PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus] >KGN61442.1 hypothetical protein Csa_2G123040 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 1.5e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60

Query: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 111
           RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH
Sbjct: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 110

BLAST of CsaV3_2G011240 vs. NCBI nr
Match: XP_008441665.1 (PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 7.7e-48
Identity = 99/110 (90.00%), Postives = 100/110 (90.91%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIP+FYRAMKKNRRRRQYTVLSTKAES     AASLSFNIADFYVDPPSIKSEGR Y
Sbjct: 1   MDGLIPMFYRAMKKNRRRRQYTVLSTKAESXXXXXAASLSFNIADFYVDPPSIKSEGRGY 60

Query: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 111
           RRYNSY GST QEWRRSGVAAGKS SHG PPEQQLVRFRSQRILSCLTGH
Sbjct: 61  RRYNSYGGSTPQEWRRSGVAAGKSRSHGQPPEQQLVRFRSQRILSCLTGH 110

BLAST of CsaV3_2G011240 vs. NCBI nr
Match: XP_022969943.1 (uncharacterized protein LOC111468990 [Cucurbita maxima])

HSP 1 Score: 126.3 bits (316), Expect = 6.3e-26
Identity = 76/119 (63.87%), Postives = 84/119 (70.59%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSI------K 60
           M+GLIP+FYRAMKK R R QY+VLS +A + A   A S SFNIADFYVDPPS       K
Sbjct: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAA---APSPSFNIADFYVDPPSTHVFPTSK 60

Query: 61  SEG----RAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 110
           SE     RA RRYNS+ GST +EWRR+  AA   SSHGP    QLVRFRSQRILSCLTG
Sbjct: 61  SEDPGAPRARRRYNSFGGSTPEEWRRTTSAAAGKSSHGP----QLVRFRSQRILSCLTG 112

BLAST of CsaV3_2G011240 vs. NCBI nr
Match: XP_022929072.1 (uncharacterized protein LOC111435769 [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 7.5e-19
Identity = 68/120 (56.67%), Postives = 75/120 (62.50%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSI------K 60
           M+GLIP+FYRAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       K
Sbjct: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSK 60

Query: 61  SEG----RAYRRYNSYAGST-TQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 110
           SE     RA+RRYNS+ GST                SHGP    QLVRFRSQRILSCLTG
Sbjct: 61  SEDPGATRAHRRYNSFGGSTXXXXXXXXXXXXXXXXSHGP----QLVRFRSQRILSCLTG 111

BLAST of CsaV3_2G011240 vs. NCBI nr
Match: XP_023551320.1 (uncharacterized protein LOC111809172 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 65/122 (53.28%), Postives = 72/122 (59.02%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSI------K 60
           M+GLIP+FYRAMKK R R QY+VLS +A +     AAS SFNIADFYVDPPS       K
Sbjct: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAA-----AASPSFNIADFYVDPPSTHVFPTSK 60

Query: 61  SEG----RAYRRYNSYA---GSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCL 110
           SE     RA+RRYNS+                       HGP    QLVRFRSQRILSCL
Sbjct: 61  SEDPGATRAHRRYNSFGXXXXXXXXXXXXXXXXXXXXXXHGP----QLVRFRSQRILSCL 113

BLAST of CsaV3_2G011240 vs. TAIR10
Match: AT2G44010.1 (unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAES-EAETEAASLSFNIADFYVDPPSIKSEGRA 60
           MDGLIP+  +A+KKN  RR+Y  LS  A + E+   A+ +  N+            +GR 
Sbjct: 1   MDGLIPMALKAVKKNLTRRRYERLSYSATTRESYDFASDIEMNV------------DGRH 60

Query: 61  YRR---YNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 110
           +RR      ++  +++E +R+G  A + S   PP E QLVRF+S R+ SC++G
Sbjct: 61  HRRGWSVGDFSSLSSRETKRNGGVAPEKSL-TPPREGQLVRFKSHRLFSCISG 100

BLAST of CsaV3_2G011240 vs. TAIR10
Match: AT3G59880.1 (unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 38/125 (30.40%), Postives = 69/125 (55.20%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAES-------------EAETEAASLSFNIADF- 60
           MDGLIP+ ++AM+KNR R++Y  LS+ A +              A+++ + +S   + F 
Sbjct: 1   MDGLIPMAFKAMRKNRTRKRYECLSSSAGTTKDSYDDSDFFPFAAKSDHSVVSRPSSSFD 60

Query: 61  YVDPPSIKSEGRAYRRYN--SYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRIL 110
           +++  ++  + R +R ++   ++  + +E +RSGV  G      P    QLVR RS R+ 
Sbjct: 61  HIEMNNVDVQQRHHRGWSVGDFSSMSCREGKRSGVDGG-DIGFSPSRRGQLVRNRSHRLF 120

BLAST of CsaV3_2G011240 vs. TrEMBL
Match: tr|A0A0A0LL24|A0A0A0LL24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123040 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.6e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60

Query: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 111
           RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH
Sbjct: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 110

BLAST of CsaV3_2G011240 vs. TrEMBL
Match: tr|A0A1S3B4K9|A0A1S3B4K9_CUCME (uncharacterized protein LOC103485749 OS=Cucumis melo OX=3656 GN=LOC103485749 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.1e-48
Identity = 99/110 (90.00%), Postives = 100/110 (90.91%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSIKSEGRAY 60
           MDGLIP+FYRAMKKNRRRRQYTVLSTKAES     AASLSFNIADFYVDPPSIKSEGR Y
Sbjct: 1   MDGLIPMFYRAMKKNRRRRQYTVLSTKAESXXXXXAASLSFNIADFYVDPPSIKSEGRGY 60

Query: 61  RRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTGH 111
           RRYNSY GST QEWRRSGVAAGKS SHG PPEQQLVRFRSQRILSCLTGH
Sbjct: 61  RRYNSYGGSTPQEWRRSGVAAGKSRSHGQPPEQQLVRFRSQRILSCLTGH 110

BLAST of CsaV3_2G011240 vs. TrEMBL
Match: tr|B9T533|B9T533_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0211550 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.7e-09
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVD--------PPS 60
           M+GL+PL Y+A+K+NR RRQY  LS+          A+ ++N ADFY+         P S
Sbjct: 1   MEGLLPLVYKAIKRNRTRRQYECLSS---------GAAFAYNPADFYISDAETTYTKPSS 60

Query: 61  IKSE------GRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSC 110
           I  E      GR+     SY  S+ ++   +G ++ + ++   PP +QLVRFRSQR+ SC
Sbjct: 61  IIMEKNNAGTGRSKLHRRSY--SSVEDLSVTG-SSRRRTAGASPPRKQLVRFRSQRMFSC 111

BLAST of CsaV3_2G011240 vs. TrEMBL
Match: tr|A0A2N9IN64|A0A2N9IN64_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53482 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPS-------- 60
           M+GLIP+ Y+A+KK + RRQY+ LS++          + S+NIADFY +  S        
Sbjct: 1   MEGLIPMVYKAIKKTKVRRQYSYLSSE---------TAQSYNIADFYTNNQSHVYLLPNS 60

Query: 61  ------IKSEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSC 110
                   +EG ++RR+ S  G     +  +G    K     PP  +QLVRFRS R+LSC
Sbjct: 61  TERVGGFHTEGSSHRRHKS-VGDYAVGFTSTG--ENKRMEFAPPAPKQLVRFRSLRMLSC 111

BLAST of CsaV3_2G011240 vs. TrEMBL
Match: tr|A0A061EPK1|A0A061EPK1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021536 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 45/123 (36.59%), Postives = 64/123 (52.03%), Query Frame = 0

Query: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPS-------- 60
           M+GLIPL YR +KKN+ RRQY  LS+          A+ ++NIADF VD  S        
Sbjct: 1   MEGLIPLVYRTLKKNKTRRQYQCLSS---------GAAQTYNIADFDVDGQSPVCMKPST 60

Query: 61  ------IKSEGRAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSC 110
                 +K++   +RR+ S    + +     G+  G S +   PP  +L RFRS R+ SC
Sbjct: 61  AEKSCGLKTQRNGHRRHVSMGDFSMRYSSADGMKTGASPT---PPAPKLKRFRSHRMFSC 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004138944.11.5e-54100.00PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus] >KGN61442.1 hy... [more]
XP_008441665.17.7e-4890.00PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo][more]
XP_022969943.16.3e-2663.87uncharacterized protein LOC111468990 [Cucurbita maxima][more]
XP_022929072.17.5e-1956.67uncharacterized protein LOC111435769 [Cucurbita moschata][more]
XP_023551320.11.6e-1653.28uncharacterized protein LOC111809172 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G44010.11.7e-0936.28unknown protein[more]
AT3G59880.17.3e-0830.40unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LL24|A0A0A0LL24_CUCSA9.6e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123040 PE=4 SV=1[more]
tr|A0A1S3B4K9|A0A1S3B4K9_CUCME5.1e-4890.00uncharacterized protein LOC103485749 OS=Cucumis melo OX=3656 GN=LOC103485749 PE=... [more]
tr|B9T533|B9T533_RICCO4.7e-0938.21Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0211550 PE=4 SV=1[more]
tr|A0A2N9IN64|A0A2N9IN64_FAGSY1.0e-0837.40Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53482 PE=4 SV=1[more]
tr|A0A061EPK1|A0A061EPK1_THECC1.8e-0836.59Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021536 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G011240.1CsaV3_2G011240.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..95
NoneNo IPR availablePANTHERPTHR35485:SF1EXPRESSED PROTEINcoord: 1..109
NoneNo IPR availablePANTHERPTHR35485FAMILY NOT NAMEDcoord: 1..109