Carg20736 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20736
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_134 : 9326 .. 9661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTTTGATTCCGATGTTCTACAGAGCGATGAAGAAAACCAGAATCAGAAGCCAATATTCAGTACTTTCCCCTGAAGCAGCAGCAGCACCTTCTCCATCTTTCAACATTGCTGATTTCTACGTGGATCCCCCTTCAACCCACGTCTTCCCCACTTCCAAATCTGAGGACCCTGGCGCCACCAGGGCTCACCGGAGATACAACTCATTCGGCGGATCTACGCCGGAGGAGTGGAGGAGAACTACCTCCGCCGCCGCCGCCAAGTCCAGTCATGGGCCACAGCTTGTTAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGGCAGTGA

mRNA sequence

ATGGAGGGTTTGATTCCGATGTTCTACAGAGCGATGAAGAAAACCAGAATCAGAAGCCAATATTCAGTACTTTCCCCTGAAGCAGCAGCAGCACCTTCTCCATCTTTCAACATTGCTGATTTCTACGTGGATCCCCCTTCAACCCACGTCTTCCCCACTTCCAAATCTGAGGACCCTGGCGCCACCAGGGCTCACCGGAGATACAACTCATTCGGCGGATCTACGCCGGAGGAGTGGAGGAGAACTACCTCCGCCGCCGCCGCCAAGTCCAGTCATGGGCCACAGCTTGTTAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGGCAGTGA

Coding sequence (CDS)

ATGGAGGGTTTGATTCCGATGTTCTACAGAGCGATGAAGAAAACCAGAATCAGAAGCCAATATTCAGTACTTTCCCCTGAAGCAGCAGCAGCACCTTCTCCATCTTTCAACATTGCTGATTTCTACGTGGATCCCCCTTCAACCCACGTCTTCCCCACTTCCAAATCTGAGGACCCTGGCGCCACCAGGGCTCACCGGAGATACAACTCATTCGGCGGATCTACGCCGGAGGAGTGGAGGAGAACTACCTCCGCCGCCGCCGCCAAGTCCAGTCATGGGCCACAGCTTGTTAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGGCAGTGA

Protein sequence

MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPGATRAHRRYNSFGGSTPEEWRRTTSAAAAKSSHGPQLVRFRSQRILSCLTGQ

Homology

[Close]

BLAST of Carg20736 vs. NCBI nr
Match: XP_022969943.1 (uncharacterized protein LOC111468990 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 3.3e-51
Identity = 108/113 (95.58%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPE--AAAAPSPSFNIADFYVDPPSTHVFPTSKSED 60
           MEGLIPMFYRAMKKTRIRSQYSVLSPE  AAAAPSPSFNIADFYVDPPSTHVFPTSKSED
Sbjct: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAAAPSPSFNIADFYVDPPSTHVFPTSKSED 60

Query: 61  PGATRAHRRYNSFGGSTPEEWRRTTSAAAAKSSHGPQLVRFRSQRILSCLTGQ 112
           PGA RA RRYNSFGGSTPEEWRRTTSAAA KSSHGPQLVRFRSQRILSCLTGQ
Sbjct: 61  PGAPRARRRYNSFGGSTPEEWRRTTSAAAGKSSHGPQLVRFRSQRILSCLTGQ 113

[Close]

BLAST of Carg20736 vs. NCBI nr
Match: XP_022929072.1 (uncharacterized protein LOC111435769 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 9.8e-43
Identity = 96/112 (85.71%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPG 60
           MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPG
Sbjct: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPG 60

Query: 61  ATRAHRRYNSFGGST-PEEWRRTTSAAAAKSSHGPQLVRFRSQRILSCLTGQ 112
           ATRAHRRYNSFGGST                SHGPQLVRFRSQRILSCLTGQ
Sbjct: 61  ATRAHRRYNSFGGSTXXXXXXXXXXXXXXXXSHGPQLVRFRSQRILSCLTGQ 112

[Close]

BLAST of Carg20736 vs. NCBI nr
Match: XP_023551320.1 (uncharacterized protein LOC111809172 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 6.5e-39
Identity = 91/114 (79.82%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPG 60
           MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAA SPSFNIADFYVDPPSTHVFPTSKSEDPG
Sbjct: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAASPSFNIADFYVDPPSTHVFPTSKSEDPG 60

Query: 61  ATRAHRRYNSFG---GSTPEEWRRTTSAAAAKSSHGPQLVRFRSQRILSCLTGQ 112
           ATRAHRRYNSFG                      HGPQLVRFRSQRILSCLTGQ
Sbjct: 61  ATRAHRRYNSFGXXXXXXXXXXXXXXXXXXXXXXHGPQLVRFRSQRILSCLTGQ 114

[Close]

BLAST of Carg20736 vs. NCBI nr
Match: XP_004138944.1 (PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus] >KGN61442.1 hypothetical protein Csa_2G123040 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 5.4e-25
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSK 60
           M+GLIP+FYRAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       K
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSI------K 60

Query: 61  SEDPGATRAHRRYNSFGGSTPEEWRRTTSAAAAKSSHGP----QLVRFRSQRILSCLTG 111
           SE     RA+RRYNS+ GST +EWRR+  AA   SSHGP    QLVRFRSQRILSCLTG
Sbjct: 61  SEG----RAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 109

[Close]

BLAST of Carg20736 vs. NCBI nr
Match: XP_008441665.1 (PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 5.4e-25
Identity = 75/119 (63.03%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSK 60
           M+GLIPMFYRAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       K
Sbjct: 1   MDGLIPMFYRAMKKNRRRRQYTVLSTKAESXXXXXAASLSFNIADFYVDPPSI------K 60

Query: 61  SEDPGATRAHRRYNSFGGSTPEEWRRTTSAAAAKSSHG----PQLVRFRSQRILSCLTG 111
           SE     R +RRYNS+GGSTP+EWRR+  AA    SHG     QLVRFRSQRILSCLTG
Sbjct: 61  SEG----RGYRRYNSYGGSTPQEWRRSGVAAGKSRSHGQPPEQQLVRFRSQRILSCLTG 109

[Close]

BLAST of Carg20736 vs. TAIR10
Match: AT2G44010.1 (unknown protein)

HSP 1 Score: 44.3 bits (103), Expect = 5.8e-05
Identity = 39/117 (33.33%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPG 60
           M+GLIPM  +A+KK   R +Y  LS  A    S  F  +D  ++    H           
Sbjct: 1   MDGLIPMALKAVKKNLTRRRYERLSYSATTRESYDF-ASDIEMNVDGRH----------- 60

Query: 61  ATRAHRR---YNSFGGSTPEEWRRTTSAAAAKSSHGP---QLVRFRSQRILSCLTGQ 112
               HRR      F   +  E +R    A  KS   P   QLVRF+S R+ SC++GQ
Sbjct: 61  ----HRRGWSVGDFSSLSSRETKRNGGVAPEKSLTPPREGQLVRFKSHRLFSCISGQ 101

[Close]

BLAST of Carg20736 vs. TAIR10
Match: AT3G59880.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 38/126 (30.16%), Postives = 59/126 (46.83%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFY----------VDPPSTHV 60
           M+GLIPM ++AM+K R R +Y  LS  +A     S++ +DF+          V  PS+  
Sbjct: 1   MDGLIPMAFKAMRKNRTRKRYECLS-SSAGTTKDSYDDSDFFPFAAKSDHSVVSRPSSSF 60

Query: 61  FPTSKSEDPGATRAHRRYN--SFGGSTPEEWRRT---TSAAAAKSSHGPQLVRFRSQRIL 112
                +      R HR ++   F   +  E +R+           S   QLVR RS R+ 
Sbjct: 61  DHIEMNNVDVQQRHHRGWSVGDFSSMSCREGKRSGVDGGDIGFSPSRRGQLVRNRSHRLF 120

[Close]

BLAST of Carg20736 vs. TrEMBL
Match: tr|A0A1S3B4K9|A0A1S3B4K9_CUCME (uncharacterized protein LOC103485749 OS=Cucumis melo OX=3656 GN=LOC103485749 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-25
Identity = 75/119 (63.03%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSK 60
           M+GLIPMFYRAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       K
Sbjct: 1   MDGLIPMFYRAMKKNRRRRQYTVLSTKAESXXXXXAASLSFNIADFYVDPPSI------K 60

Query: 61  SEDPGATRAHRRYNSFGGSTPEEWRRTTSAAAAKSSHG----PQLVRFRSQRILSCLTG 111
           SE     R +RRYNS+GGSTP+EWRR+  AA    SHG     QLVRFRSQRILSCLTG
Sbjct: 61  SEG----RGYRRYNSYGGSTPQEWRRSGVAAGKSRSHGQPPEQQLVRFRSQRILSCLTG 109

[Close]

BLAST of Carg20736 vs. TrEMBL
Match: tr|A0A0A0LL24|A0A0A0LL24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123040 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-25
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSK 60
           M+GLIP+FYRAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       K
Sbjct: 1   MDGLIPLFYRAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSI------K 60

Query: 61  SEDPGATRAHRRYNSFGGSTPEEWRRTTSAAAAKSSHGP----QLVRFRSQRILSCLTG 111
           SE     RA+RRYNS+ GST +EWRR+  AA   SSHGP    QLVRFRSQRILSCLTG
Sbjct: 61  SEG----RAYRRYNSYAGSTTQEWRRSGVAAGKSSSHGPPPEQQLVRFRSQRILSCLTG 109

[Close]

BLAST of Carg20736 vs. TrEMBL
Match: tr|A0A2N9IN64|A0A2N9IN64_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53482 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPS-THVFPTSKSEDP 60
           MEGLIPM Y+A+KKT++R QYS LS E A     S+NIADFY +  S  ++ P S     
Sbjct: 1   MEGLIPMVYKAIKKTKVRRQYSYLSSETA----QSYNIADFYTNNQSHVYLLPNSTERVG 60

Query: 61  G---ATRAHRRYNSFGG------STPEEWRRTTSAAAAKSSHGPQLVRFRSQRILSCLTG 111
           G      +HRR+ S G       ST E  R   +  A K     QLVRFRS R+LSC+TG
Sbjct: 61  GFHTEGSSHRRHKSVGDYAVGFTSTGENKRMEFAPPAPK-----QLVRFRSLRMLSCVTG 111

[Close]

BLAST of Carg20736 vs. TrEMBL
Match: tr|A0A218XIN2|A0A218XIN2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027584 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPG 60
           MEGLIP+ YRA+K+T+ R QY  LS  AA     ++NIADFY  P S++  P + +   G
Sbjct: 1   MEGLIPIVYRAIKRTQTRRQYECLSSSAA----QTYNIADFY--PASSYGMPDTNAYTNG 60

Query: 61  ATRA------------HRRYNSFG--GSTPEEWRRTTSAAAAKSSHGPQLVRFRSQRILS 112
             +A            HRRYNS G    + ++    T     K     QLVRFRS R+ S
Sbjct: 61  DLKAVGVGAGGRLSNGHRRYNSLGDFSFSQDDREFDTGVRMKKQXXXXQLVRFRSHRMFS 119

[Close]

BLAST of Carg20736 vs. TrEMBL
Match: tr|A0A2I4G635|A0A2I4G635_9ROSI (uncharacterized protein LOC109005032 OS=Juglans regia OX=51240 GN=LOC109005032 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 1   MEGLIPMFYRAMKKTRIRSQYSVLSPEAAAAPSPSFNIADFYVDPPSTHVFPTSKSEDPG 60
           MEGLIPM Y+A+K+ R+R +Y  LS    +  + S+NIADFY++  S HV+    ++  G
Sbjct: 1   MEGLIPMVYKAIKRNRVRREYRCLS----SGDAQSYNIADFYINDQS-HVYTLPSTQKIG 60

Query: 61  A-----TRAHRRYNSFG----GSTPEEWRRTTSAAAAKSSHGPQLVRFRSQRILSCLTG 111
           A        HRR+ S G    G TP E +R  +A A K      LVRFRS R+ SC++G
Sbjct: 61  AGLHIERNRHRRHRSVGDYGVGFTPPEGKRMETAPAPK-----LLVRFRSHRLFSCVSG 109

The following BLAST results are available for this feature:

BLAST of Carg20736 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022969943.1	3.3e-51	95.58	uncharacterized protein LOC111468990 [Cucurbita maxima]	[more]
XP_022929072.1	9.8e-43	85.71	uncharacterized protein LOC111435769 [Cucurbita moschata]	[more]
XP_023551320.1	6.5e-39	79.82	uncharacterized protein LOC111809172 [Cucurbita pepo subsp. pepo]	[more]
XP_004138944.1	5.4e-25	63.03	PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus] >KGN61442.1 hy...	[more]
XP_008441665.1	5.4e-25	63.03	PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo]	[more]

BLAST of Carg20736 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44010.1	5.8e-05	33.33	unknown protein	[more]
AT3G59880.1	1.3e-04	30.16	unknown protein	[more]

BLAST of Carg20736 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20736 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4K9\|A0A1S3B4K9_CUCME	3.6e-25	63.03	uncharacterized protein LOC103485749 OS=Cucumis melo OX=3656 GN=LOC103485749 PE=...	[more]
tr\|A0A0A0LL24\|A0A0A0LL24_CUCSA	3.6e-25	63.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123040 PE=4 SV=1	[more]
tr\|A0A2N9IN64\|A0A2N9IN64_FAGSY	1.9e-10	45.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53482 PE=4 SV=1	[more]
tr\|A0A218XIN2\|A0A218XIN2_PUNGR	2.5e-10	40.80	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027584 PE=4 SV=1	[more]
tr\|A0A2I4G635\|A0A2I4G635_9ROSI	3.2e-10	42.02	uncharacterized protein LOC109005032 OS=Juglans regia OX=51240 GN=LOC109005032 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20736-RA	Carg20736-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..82
None	No IPR available	PANTHER	PTHR35485:SF1	EXPRESSED PROTEIN	coord: 1..111
None	No IPR available	PANTHER	PTHR35485	FAMILY NOT NAMED	coord: 1..111

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20736	Csa2G123040	Cucumber (Chinese Long) v2	carcuB0755
Carg20736	ClCG06G009780	Watermelon (Charleston Gray)	carwcgB0717
Carg20736	CSPI02G08860	Wild cucumber (PI 183967)	carcpiB0772
Carg20736	Cucsa.266140	Cucumber (Gy14) v1	carcgyB0832
Carg20736	CmaCh15G014430	Cucurbita maxima (Rimu)	carcmaB1033
Carg20736	CmoCh15G015220	Cucurbita moschata (Rifu)	carcmoB1004
Carg20736	Cp4.1LG13g00020	Cucurbita pepo (Zucchini)	carcpeB1040
Carg20736	CsGy2G009140	Cucumber (Gy14) v2	carcgybB0734
Carg20736	MELO3C008506.2	Melon (DHL92) v3.6.1	carmedB0747
Carg20736	CsaV3_2G011240	Cucumber (Chinese Long) v3	carcucB0775
Carg20736	Cla97C06G119300	Watermelon (97103) v2	carwmbB0775
Carg20736	Bhi12G001187	Wax gourd	carwgoB0874

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None