Csa1G702000 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G702000
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative uncharacterized protein OJ1092_A07.117
Location	Chr1 : 28502944 .. 28503752 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAAGAAAAAAAAATACTTCTCTTCCTCCCCAAATGGTGTGGAACACCGTTGCGACAACGGAAAGAAAGAGATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCCTTGAAATCAGTGTAGAAAGATGGGAAAGCTGTAGATTGGGGATCGCATCGGGGAAGATGGATTAATGAGTATGCGAAGATAATGGAGCACTCGTGTGTTTAAAATTTCCTTAGAACAAACAAATCTTCAAACATGATTCAAGTAGAAGGTCCGATCCTGAGAATTGAGAAAGAATGTGAGTTCATATCCCTTCTCGAGGAGAAAAACATCAAAATTGTTGAATATACTGAGTGAAATTCCTTCCGAGTCGCATAATTTTGTCATTAGCAACTATATATTTTGGTTTCGTTATAGAACATCTAATTGATATCAATTGGAATTCTCAATGTCAAACTCTGAATTTTGTTCAAATAAAGTACTCCCATCTCCGTATTCATCAATCCCATCCCTGCTAGCTTTTGCTTGTTTGATTGGAAATTGATCAGAATCATACCATT

mRNA sequence

ATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGA

Coding sequence (CDS)

ATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGA

Protein sequence

MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF*

Homology

[Close]

BLAST of Csa1G702000 vs. TrEMBL
Match: A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Csa1G702000 vs. TrEMBL
Match: W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC+RL++AL +CH+R+P GPAR SACRHLNR+LAECLV+ ACP E EA+R+LCSS GTA
Sbjct: 15 GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCSSAGTA 74

Query: 73 LKRSQCEQAKFSLSFCLSSLQ 94
          LKRSQC+ A+ SLS CLSSLQ
Sbjct: 75 LKRSQCQDAQLSLSLCLSSLQ 95

[Close]

BLAST of Csa1G702000 vs. TrEMBL
Match: A0A067GFF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC+RL +AL ECHKRV  GPAR S CRHLNR+LAECLVA ACP E+E+VR+ CSSGGTA
Sbjct: 8  GGCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESESVRSFCSSGGTA 67

Query: 73 LKRSQCEQAKFSLSFCLSS 92
          LKRSQC+QA+ +LS CLSS
Sbjct: 68 LKRSQCQQAQLALSVCLSS 86

[Close]

BLAST of Csa1G702000 vs. TrEMBL
Match: V4W734_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017318mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC RL +AL ECHKRV  GPAR S CRHLNR+LAECLVA ACP E+EAVR+ CSSGGTA
Sbjct: 8  GGCGRLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTA 67

Query: 73 LKRSQCEQAKFSLSFCLSS 92
          LKRSQC+QA+ +LS CLSS
Sbjct: 68 LKRSQCQQAQLALSVCLSS 86

[Close]

BLAST of Csa1G702000 vs. TrEMBL
Match: A0A0S3RII1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G331100 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.7e-27
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 15 CDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTALK 74
          C+R+E ALRECH+R+P GP+R SACRHLN++LA CLV++ACP E+EAVRTLCS+ GTALK
Sbjct: 7  CERMENALRECHRRIPAGPSRDSACRHLNQALALCLVSSACPEESEAVRTLCSTAGTALK 66

Query: 75 RSQCEQAKFSLSFCLSSLQ 94
          R QC+QA+FSLS CLSS Q
Sbjct: 67 RQQCQQAQFSLSLCLSSHQ 85

[Close]

BLAST of Csa1G702000 vs. TAIR10
Match: AT1G31175.1 (AT1G31175.1 unknown protein)

HSP 1 Score: 127.5 bits (319), Expect = 4.4e-30
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 15  CDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTALK 74
           CDRLE+AL +CH+R+PEGPARRS CRHLN++ AEC+VA ACP E+EAVR+LCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 75  RSQCEQAKFSLSFCLSSLQ 94
           R QCE A+ SLS CLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

[Close]

BLAST of Csa1G702000 vs. NCBI nr
Match: gi|449455409|ref|XP_004145445.1| (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 3.8e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Csa1G702000 vs. NCBI nr
Match: gi|659118288|ref|XP_008459043.1| (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Csa1G702000 vs. NCBI nr
Match: gi|703150294|ref|XP_010109823.1| (hypothetical protein L484_018480 [Morus notabilis])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC+RL++AL +CH+R+P GPAR SACRHLNR+LAECLV+ ACP E EA+R+LCSS GTA
Sbjct: 15 GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCSSAGTA 74

Query: 73 LKRSQCEQAKFSLSFCLSSLQ 94
          LKRSQC+ A+ SLS CLSSLQ
Sbjct: 75 LKRSQCQDAQLSLSLCLSSLQ 95

[Close]

BLAST of Csa1G702000 vs. NCBI nr
Match: gi|731371219|ref|XP_002277786.2| (PREDICTED: uncharacterized protein LOC100245750 [Vitis vinifera])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 14 GCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTAL 73
          GC+RL QAL ECH+R+  GPAR +ACRHLNRSLAEC+VA ACP+E+EAVR+LCSSGGTAL
Sbjct: 19 GCERLHQALCECHRRIAAGPARDAACRHLNRSLAECMVALACPAESEAVRSLCSSGGTAL 78

Query: 74 KRSQCEQAKFSLSFCLSSLQ 94
          KRSQC+QA+ SL+ CLSS Q
Sbjct: 79 KRSQCQQAQLSLAVCLSSHQ 98

[Close]

BLAST of Csa1G702000 vs. NCBI nr
Match: gi|567912801|ref|XP_006448714.1| (hypothetical protein CICLE_v10017318mg [Citrus clementina])

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-27
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC RL +AL ECHKRV  GPAR S CRHLNR+LAECLVA ACP E+EAVR+ CSSGGTA
Sbjct: 8  GGCGRLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTA 67

Query: 73 LKRSQCEQAKFSLSFCLSS 92
          LKRSQC+QA+ +LS CLSS
Sbjct: 68 LKRSQCQQAQLALSVCLSS 86

The following BLAST results are available for this feature:

BLAST of Csa1G702000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1_CUCSA	2.6e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1	[more]
W9SE28_9ROSA	2.1e-28	72.84	Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1	[more]
A0A067GFF9_CITSI	3.0e-27	74.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1	[more]
V4W734_9ROSI	3.0e-27	75.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017318mg PE=4 SV=1	[more]
A0A0S3RII1_PHAAN	6.7e-27	72.15	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G331100 PE=...	[more]

BLAST of Csa1G702000 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31175.1	4.4e-30	72.15	unknown protein	[more]

BLAST of Csa1G702000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455409\|ref\|XP_004145445.1\|	3.8e-47	100.00	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
gi\|659118288\|ref\|XP_008459043.1\|	1.1e-43	93.62	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]	[more]
gi\|703150294\|ref\|XP_010109823.1\|	3.0e-28	72.84	hypothetical protein L484_018480 [Morus notabilis]	[more]
gi\|731371219\|ref\|XP_002277786.2\|	1.9e-27	75.00	PREDICTED: uncharacterized protein LOC100245750 [Vitis vinifera]	[more]
gi\|567912801\|ref\|XP_006448714.1\|	4.3e-27	75.95	hypothetical protein CICLE_v10017318mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU111842	cucumber EST collection version 3.0	transcribed_cluster
CU111900	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G702000.1	Csa1G702000.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU111842	CU111842	transcribed_cluster
CU111900	CU111900	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G702000	Cla004619	Watermelon (97103) v1	cuwmB044
Csa1G702000	MELO3C021755	Melon (DHL92) v3.5.1	cumeB017
Csa1G702000	ClCG01G009440	Watermelon (Charleston Gray)	cuwcgB023
Csa1G702000	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	culsiB033
Csa1G702000	MELO3C021755.2	Melon (DHL92) v3.6.1	cumedB012
Csa1G702000	Cla97C01G009670	Watermelon (97103) v2	cuwmbB011
Csa1G702000	Bhi08G000733	Wax gourd	cuwgoB031
Csa1G702000	CSPI01G34480	Wild cucumber (PI 183967)	cpicuB001
Csa1G702000	Cucsa.003920	Cucumber (Gy14) v1	cgycuB035
Csa1G702000	CmaCh18G005580	Cucurbita maxima (Rimu)	cmacuB400
Csa1G702000	CmoCh18G005350	Cucurbita moschata (Rifu)	cmocuB387
Csa1G702000	CmoCh13G004600	Cucurbita moschata (Rifu)	cmocuB192
Csa1G702000	Cp4.1LG09g06840	Cucurbita pepo (Zucchini)	cpecuB021
Csa1G702000	Carg26145	Silver-seed gourd	carcuB0123
Csa1G702000	Carg27044	Silver-seed gourd	carcuB0973

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G702000	Cucumber (Gy14) v2	cgybcuB002
Csa1G702000	Cucurbita maxima (Rimu)	cmacuB207
Csa1G702000	Watermelon (97103) v1	cuwmB050
Csa1G702000	Cucurbita pepo (Zucchini)	cpecuB518