Cp4.1LG09g06840 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g06840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cytochrome C oxidase biogenesis Cmc1-like protein
Location	Cp4.1LG09 : 5963214 .. 5963498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCGGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAAGCGGAGGCGGTGCGAACACTCTGCTCTAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAACAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

mRNA sequence

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCGGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAAGCGGAGGCGGTGCGAACACTCTGCTCTAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAACAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Coding sequence (CDS)

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCGGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAAGCGGAGGCGGTGCGAACACTCTGCTCTAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAACAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Protein sequence

MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL

Homology

[Close]

BLAST of Cp4.1LG09g06840 vs. TrEMBL
Match: A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-39
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Cp4.1LG09g06840 vs. TrEMBL
Match: W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-27
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1


Query: 4  TGKAPIGGD-GGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAV 63
          TG    G + GGCERL++AL DCH+RLP GPAR S C HLNR+ AECLV+  CP+E EA+
Sbjct: 5  TGIGGAGSEIGGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAI 64

Query: 64 RTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 95
          R+LCSS GTALKRSQC+ A+ S SLCLSSLQL
Sbjct: 65 RSLCSSAGTALKRSQCQDAQLSLSLCLSSLQL 96

[Close]

BLAST of Cp4.1LG09g06840 vs. TrEMBL
Match: A0A0K9S104_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005450 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-27
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 13 GGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTA 72
          GGCERL+ AL DCH+R+P GPAR SGC HLNR+F +CLVA +CP+E EAVR+LCSSGGTA
Sbjct: 12 GGCERLQNALYDCHRRMPAGPARNSGCRHLNRAFTDCLVAVICPSEIEAVRSLCSSGGTA 71

Query: 73 LKRSQCEQAKFSFSLCLSSLQ 94
          +KRSQC++A+ S S+CLS  Q
Sbjct: 72 MKRSQCQEARLSLSVCLSQHQ 92

[Close]

BLAST of Cp4.1LG09g06840 vs. TrEMBL
Match: Q9SA13_ARATH (At1g31175 OS=Arabidopsis thaliana GN=F28K20.13 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.6e-26
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 15  CERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
           C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 75  RSQCEQAKFSFSLCLSSLQ 94
           R QCE A+ S SLCLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

[Close]

BLAST of Cp4.1LG09g06840 vs. TrEMBL
Match: D7KKA0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_313968 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.3e-26
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1


Query: 12  DGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGT 71
           D  C+RL++AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT
Sbjct: 21  DISCDRLQEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGT 80

Query: 72  ALKRSQCEQAKFSFSLCLSSLQ 94
           +LKR QCE A+ S SLCLS  Q
Sbjct: 81  SLKRKQCEDAQLSLSLCLSRHQ 102

[Close]

BLAST of Cp4.1LG09g06840 vs. TAIR10
Match: AT1G31175.1 (AT1G31175.1 unknown protein)

HSP 1 Score: 124.8 bits (312), Expect = 2.8e-29
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 15  CERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
           C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 75  RSQCEQAKFSFSLCLSSLQ 94
           R QCE A+ S SLCLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

[Close]

BLAST of Cp4.1LG09g06840 vs. NCBI nr
Match: gi|449455409|ref|XP_004145445.1| (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Cp4.1LG09g06840 vs. NCBI nr
Match: gi|659118288|ref|XP_008459043.1| (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-37
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60
          M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Cp4.1LG09g06840 vs. NCBI nr
Match: gi|703150294|ref|XP_010109823.1| (hypothetical protein L484_018480 [Morus notabilis])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1


Query: 4  TGKAPIGGD-GGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAV 63
          TG    G + GGCERL++AL DCH+RLP GPAR S C HLNR+ AECLV+  CP+E EA+
Sbjct: 5  TGIGGAGSEIGGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAI 64

Query: 64 RTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 95
          R+LCSS GTALKRSQC+ A+ S SLCLSSLQL
Sbjct: 65 RSLCSSAGTALKRSQCQDAQLSLSLCLSSLQL 96

[Close]

BLAST of Cp4.1LG09g06840 vs. NCBI nr
Match: gi|902239071|gb|KNA25431.1| (hypothetical protein SOVF_005450 [Spinacia oleracea])

HSP 1 Score: 128.6 bits (322), Expect = 5.6e-27
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 13 GGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTA 72
          GGCERL+ AL DCH+R+P GPAR SGC HLNR+F +CLVA +CP+E EAVR+LCSSGGTA
Sbjct: 12 GGCERLQNALYDCHRRMPAGPARNSGCRHLNRAFTDCLVAVICPSEIEAVRSLCSSGGTA 71

Query: 73 LKRSQCEQAKFSFSLCLSSLQ 94
          +KRSQC++A+ S S+CLS  Q
Sbjct: 72 MKRSQCQEARLSLSVCLSQHQ 92

[Close]

BLAST of Cp4.1LG09g06840 vs. NCBI nr
Match: gi|727620078|ref|XP_010480796.1| (PREDICTED: uncharacterized protein LOC104759584 [Camelina sativa])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-26
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 15  CERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
           C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP+E+EAVR+LCSSGGT+LK
Sbjct: 28  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPDESEAVRSLCSSGGTSLK 87

Query: 75  RSQCEQAKFSFSLCLSSLQ 94
           R QCE A+ S SLCLS  Q
Sbjct: 88  RKQCEDAQLSLSLCLSRHQ 106

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g06840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1_CUCSA	2.0e-39	83.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1	[more]
W9SE28_9ROSA	1.0e-27	67.39	Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1	[more]
A0A0K9S104_SPIOL	3.9e-27	69.14	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005450 PE=4 SV=1	[more]
Q9SA13_ARATH	5.6e-26	70.89	At1g31175 OS=Arabidopsis thaliana GN=F28K20.13 PE=2 SV=1	[more]
D7KKA0_ARALL	7.3e-26	68.29	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Cp4.1LG09g06840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31175.1	2.8e-29	70.89	unknown protein	[more]

BLAST of Cp4.1LG09g06840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455409\|ref\|XP_004145445.1\|	2.8e-39	83.87	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
gi\|659118288\|ref\|XP_008459043.1\|	3.5e-37	81.72	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]	[more]
gi\|703150294\|ref\|XP_010109823.1\|	1.5e-27	67.39	hypothetical protein L484_018480 [Morus notabilis]	[more]
gi\|902239071\|gb\|KNA25431.1\|	5.6e-27	69.14	hypothetical protein SOVF_005450 [Spinacia oleracea]	[more]
gi\|727620078\|ref\|XP_010480796.1\|	4.7e-26	70.89	PREDICTED: uncharacterized protein LOC104759584 [Camelina sativa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g06840.1	Cp4.1LG09g06840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g06840	Cucsa.003920	Cucumber (Gy14) v1	cgycpeB0054
Cp4.1LG09g06840	CmaCh18G005580	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g06840	CmoCh18G005350	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g06840	CmoCh13G004600	Cucurbita moschata (Rifu)	cmocpeB182
Cp4.1LG09g06840	Cla004619	Watermelon (97103) v1	cpewmB034
Cp4.1LG09g06840	Csa1G702000	Cucumber (Chinese Long) v2	cpecuB021
Cp4.1LG09g06840	MELO3C021755	Melon (DHL92) v3.5.1	cpemeB027
Cp4.1LG09g06840	ClCG01G009440	Watermelon (Charleston Gray)	cpewcgB028
Cp4.1LG09g06840	CSPI01G34480	Wild cucumber (PI 183967)	cpecpiB019
Cp4.1LG09g06840	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g06840	MELO3C021755.2	Melon (DHL92) v3.6.1	cpemedB032
Cp4.1LG09g06840	CsaV3_1G046330	Cucumber (Chinese Long) v3	cpecucB0022
Cp4.1LG09g06840	Bhi08G000733	Wax gourd	cpewgoB0040
Cp4.1LG09g06840	Carg26145	Silver-seed gourd	carcpeB0169

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g06840	Cucurbita pepo (Zucchini)	cpecpeB048
Cp4.1LG09g06840	Cucurbita maxima (Rimu)	cmacpeB212
Cp4.1LG09g06840	Cucumber (Gy14) v2	cgybcpeB008