CmoCh18G005350 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G005350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytochrome C oxidase biogenesis Cmc1-like protein
Location	Cmo_Chr18 : 4010695 .. 4010979 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGTCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGGAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

mRNA sequence

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGTCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGGAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Coding sequence (CDS)

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGATTGTCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGGAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Homology

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BLAST of CmoCh18G005350 vs. TrEMBL
Match: A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-39
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCE+AKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of CmoCh18G005350 vs. TrEMBL
Match: W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-28
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 4  TGKAPIGGD-GGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAV 63
          TG    G + GGCERL++AL DCH+RLP GPAR S C HLNR+ AECLV+  CP+E EA+
Sbjct: 5  TGIGGAGSEIGGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAI 64

Query: 64 RTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 95
          R+LCSS GTALKRSQC++A+ S SLCLSSLQL
Sbjct: 65 RSLCSSAGTALKRSQCQDAQLSLSLCLSSLQL 96

[Close]

BLAST of CmoCh18G005350 vs. TrEMBL
Match: A0A0K9S104_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005450 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 13 GGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTA 72
          GGCERL+ AL DCH+R+P GPAR SGC HLNR+F +CLVA +CP+E EAVR+LCSSGGTA
Sbjct: 12 GGCERLQNALYDCHRRMPAGPARNSGCRHLNRAFTDCLVAVICPSEIEAVRSLCSSGGTA 71

Query: 73 LKRSQCEEAKFSFSLCLSSLQ 94
          +KRSQC+EA+ S S+CLS  Q
Sbjct: 72 MKRSQCQEARLSLSVCLSQHQ 92

[Close]

BLAST of CmoCh18G005350 vs. TrEMBL
Match: D7KKA0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_313968 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-26
Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = 1


Query: 12  DGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGT 71
           D  C+RL++AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT
Sbjct: 21  DISCDRLQEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGT 80

Query: 72  ALKRSQCEEAKFSFSLCLSSLQ 94
           +LKR QCE+A+ S SLCLS  Q
Sbjct: 81  SLKRKQCEDAQLSLSLCLSRHQ 102

[Close]

BLAST of CmoCh18G005350 vs. TrEMBL
Match: R0IFX4_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010767mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.3e-26
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 15 CERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
          C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+V   CP E+EAVR+LCSSGGT+LK
Sbjct: 4  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVGEACPEESEAVRSLCSSGGTSLK 63

Query: 75 RSQCEEAKFSFSLCLSSLQ 94
          R QCE+A+ S SLCLS  Q
Sbjct: 64 RKQCEDAQLSLSLCLSRHQ 82

[Close]

BLAST of CmoCh18G005350 vs. TAIR10
Match: AT1G31175.1 (AT1G31175.1 unknown protein)

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-29
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 15  CERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
           C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 75  RSQCEEAKFSFSLCLSSLQ 94
           R QCE A+ S SLCLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

[Close]

BLAST of CmoCh18G005350 vs. NCBI nr
Match: gi|449455409|ref|XP_004145445.1| (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-39
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCE+AKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of CmoCh18G005350 vs. NCBI nr
Match: gi|659118288|ref|XP_008459043.1| (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 5.9e-37
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          M+P G++P+ GD GCERLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCE+AKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of CmoCh18G005350 vs. NCBI nr
Match: gi|703150294|ref|XP_010109823.1| (hypothetical protein L484_018480 [Morus notabilis])

HSP 1 Score: 131.7 bits (330), Expect = 6.6e-28
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 4  TGKAPIGGD-GGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAV 63
          TG    G + GGCERL++AL DCH+RLP GPAR S C HLNR+ AECLV+  CP+E EA+
Sbjct: 5  TGIGGAGSEIGGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAI 64

Query: 64 RTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 95
          R+LCSS GTALKRSQC++A+ S SLCLSSLQL
Sbjct: 65 RSLCSSAGTALKRSQCQDAQLSLSLCLSSLQL 96

[Close]

BLAST of CmoCh18G005350 vs. NCBI nr
Match: gi|902239071|gb|KNA25431.1| (hypothetical protein SOVF_005450 [Spinacia oleracea])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 13 GGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTA 72
          GGCERL+ AL DCH+R+P GPAR SGC HLNR+F +CLVA +CP+E EAVR+LCSSGGTA
Sbjct: 12 GGCERLQNALYDCHRRMPAGPARNSGCRHLNRAFTDCLVAVICPSEIEAVRSLCSSGGTA 71

Query: 73 LKRSQCEEAKFSFSLCLSSLQ 94
          +KRSQC+EA+ S S+CLS  Q
Sbjct: 72 MKRSQCQEARLSLSVCLSQHQ 92

[Close]

BLAST of CmoCh18G005350 vs. NCBI nr
Match: gi|727620078|ref|XP_010480796.1| (PREDICTED: uncharacterized protein LOC104759584 [Camelina sativa])

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-26
Identity = 56/79 (70.89%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 15  CERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
           C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP+E+EAVR+LCSSGGT+LK
Sbjct: 28  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPDESEAVRSLCSSGGTSLK 87

Query: 75  RSQCEEAKFSFSLCLSSLQ 94
           R QCE+A+ S SLCLS  Q
Sbjct: 88  RKQCEDAQLSLSLCLSRHQ 106

The following BLAST results are available for this feature:

BLAST of CmoCh18G005350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh18G005350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1_CUCSA	3.4e-39	82.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1	[more]
W9SE28_9ROSA	4.6e-28	67.39	Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1	[more]
A0A0K9S104_SPIOL	1.3e-27	70.37	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005450 PE=4 SV=1	[more]
D7KKA0_ARALL	2.5e-26	68.29	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
R0IFX4_9BRAS	4.3e-26	69.62	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010767mg PE=4 SV=1	[more]

BLAST of CmoCh18G005350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31175.1	2.2e-29	70.89	unknown protein	[more]

BLAST of CmoCh18G005350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455409\|ref\|XP_004145445.1\|	4.9e-39	82.80	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
gi\|659118288\|ref\|XP_008459043.1\|	5.9e-37	80.65	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]	[more]
gi\|703150294\|ref\|XP_010109823.1\|	6.6e-28	67.39	hypothetical protein L484_018480 [Morus notabilis]	[more]
gi\|902239071\|gb\|KNA25431.1\|	1.9e-27	70.37	hypothetical protein SOVF_005450 [Spinacia oleracea]	[more]
gi\|727620078\|ref\|XP_010480796.1\|	1.6e-26	70.89	PREDICTED: uncharacterized protein LOC104759584 [Camelina sativa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G005350.1	CmoCh18G005350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G005350	Cucsa.003920	Cucumber (Gy14) v1	cgycmoB0054
CmoCh18G005350	CmaCh18G005580	Cucurbita maxima (Rimu)	cmacmoB407
CmoCh18G005350	Cla004619	Watermelon (97103) v1	cmowmB377
CmoCh18G005350	Csa1G702000	Cucumber (Chinese Long) v2	cmocuB387
CmoCh18G005350	ClCG01G009440	Watermelon (Charleston Gray)	cmowcgB340
CmoCh18G005350	CSPI01G34480	Wild cucumber (PI 183967)	cmocpiB390
CmoCh18G005350	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G005350	Cp4.1LG09g06840	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G005350	CsaV3_1G046330	Cucumber (Chinese Long) v3	cmocucB0465
CmoCh18G005350	Cla97C01G009670	Watermelon (97103) v2	cmowmbB377
CmoCh18G005350	Bhi08G000733	Wax gourd	cmowgoB0530
CmoCh18G005350	Carg26145	Silver-seed gourd	carcmoB0161
CmoCh18G005350	Carg27044	Silver-seed gourd	carcmoB1283

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G005350	CmoCh13G004600	Cucurbita moschata (Rifu)	cmocmoB170

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G005350	Melon (DHL92) v3.6.1	cmomedB409
CmoCh18G005350	Cucurbita maxima (Rimu)	cmacmoB223
CmoCh18G005350	Melon (DHL92) v3.5.1	cmomeB357
CmoCh18G005350	Watermelon (97103) v1	cmowmB373
CmoCh18G005350	Cucurbita pepo (Zucchini)	cmocpeB403
CmoCh18G005350	Cucumber (Gy14) v2	cgybcmoB090