CSPI01G34480 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G34480
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Cytochrome C oxidase biogenesis Cmc1-like protein
Location	Chr1 : 29381062 .. 29381942 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAAAGAAAAAAAATACTTCTCTTCCTCCCCAAATGGTGTGGGACACCGTTGCGACAACGGAAAGAAAGAGATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCCTTGAAATCAGTGTAGAAAGATGGGAAAGCTGTAGATTGGGGATCGCATCGGGGAAGATGGATTAATGAGTATGCCAAGATAATGGAGCACTCGTGTGTTTAAAATTTCCTTAGAACAAACAAATCTTCAAACATGATTCAAGTAGAAGGTCCGATCCTGAGAATTGAGAAAGAATGTGAGTTCATATCCCTTCTCGAGGAGAAAAACATCAAAATTGTTGAATATACTGAGTGAAATTCCTTCCGAGTCGCATAATTTTGTCATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTAATTGATATCAATTGGAATTCTCAATGTCAAACTCTGAATTTTGTTCAAATAAAGTACTCCCATCTCCGTATTCATCAATCCCATCCCTGCTAGCTTTTGCTTCTTTGATTGGAAATTGATCAGAATCATACCATTGTTGAGATATAATCTTAGAGTTGAAGCTGCCATTCCTGTTGGCTGTTGCTATTGCAAATGCTCCTGCCA

mRNA sequence

ATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGA

Coding sequence (CDS)

ATGTTACCAATGGGTGAATCTCCGTTAGGTGGTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAGTGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGA

Homology

[Close]

BLAST of CSPI01G34480 vs. TrEMBL
Match: A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of CSPI01G34480 vs. TrEMBL
Match: W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC+RL++AL +CH+R+P GPAR SACRHLNR+LAECLV+ ACP E EA+R+LCSS GTA
Sbjct: 15 GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCSSAGTA 74

Query: 73 LKRSQCEQAKFSLSFCLSSLQ 94
          LKRSQC+ A+ SLS CLSSLQ
Sbjct: 75 LKRSQCQDAQLSLSLCLSSLQ 95

[Close]

BLAST of CSPI01G34480 vs. TrEMBL
Match: V4W734_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017318mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.3e-26
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC RL +AL ECHKRV  GPAR S CRHLNR+LAECLVA ACP E+EAVR+ CSSGGTA
Sbjct: 8  GGCGRLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTA 67

Query: 73 LKRSQCEQAKFSLSFCLSS 92
          LKRSQC+QA+ +LS CLSS
Sbjct: 68 LKRSQCQQAQLALSVCLSS 86

[Close]

BLAST of CSPI01G34480 vs. TrEMBL
Match: A0A067GFF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.3e-26
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC+RL +AL ECHKRV  GPAR S CRHLNR+LAECLVA ACP E+E+VR+ CSSGGTA
Sbjct: 8  GGCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESESVRSFCSSGGTA 67

Query: 73 LKRSQCEQAKFSLSFCLSS 92
          LKRSQC+QA+ +LS CLSS
Sbjct: 68 LKRSQCQQAQLALSVCLSS 86

[Close]

BLAST of CSPI01G34480 vs. TrEMBL
Match: A0A0S3RII1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G331100 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.4e-26
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 15 CDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTALK 74
          C+R+E ALRECH+R+P GP+R SACRHLN++LA CLV++ACP E+EAVRTLCS+ GTALK
Sbjct: 7  CERMENALRECHRRIPAGPSRDSACRHLNQALALCLVSSACPEESEAVRTLCSTAGTALK 66

Query: 75 RSQCEQAKFSLSFCLSSLQ 94
          R QC+QA+FSLS CLSS Q
Sbjct: 67 RQQCQQAQFSLSLCLSSHQ 85

[Close]

BLAST of CSPI01G34480 vs. TAIR10
Match: AT1G31175.1 (AT1G31175.1 unknown protein)

HSP 1 Score: 124.0 bits (310), Expect = 4.9e-29
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 15  CDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTALK 74
           CDRLE+AL +CH+R+PEGPARRS CRHLN++ AEC+VA ACP E+EAVR+LCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 75  RSQCEQAKFSLSFCLSSLQ 94
           R QCE A+ SLS CLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

[Close]

BLAST of CSPI01G34480 vs. NCBI nr
Match: gi|449455409|ref|XP_004145445.1| (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of CSPI01G34480 vs. NCBI nr
Match: gi|659118288|ref|XP_008459043.1| (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60
          MLP+GESP+ GD GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 95
          AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of CSPI01G34480 vs. NCBI nr
Match: gi|703150294|ref|XP_010109823.1| (hypothetical protein L484_018480 [Morus notabilis])

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-27
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC+RL++AL +CH+R+P GPAR SACRHLNR+LAECLV+ ACP E EA+R+LCSS GTA
Sbjct: 15 GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCSSAGTA 74

Query: 73 LKRSQCEQAKFSLSFCLSSLQ 94
          LKRSQC+ A+ SLS CLSSLQ
Sbjct: 75 LKRSQCQDAQLSLSLCLSSLQ 95

[Close]

BLAST of CSPI01G34480 vs. NCBI nr
Match: gi|731371219|ref|XP_002277786.2| (PREDICTED: uncharacterized protein LOC100245750 [Vitis vinifera])

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-26
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 14 GCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTAL 73
          GC+RL QAL ECH+R+  GPAR +ACRHLNRSLAEC+VA ACP+E+EAVR+LCSSGGTAL
Sbjct: 19 GCERLHQALCECHRRIAAGPARDAACRHLNRSLAECMVALACPAESEAVRSLCSSGGTAL 78

Query: 74 KRSQCEQAKFSLSFCLSSLQ 94
          KRSQC+QA+ SL+ CLSS Q
Sbjct: 79 KRSQCQQAQLSLAVCLSSHQ 98

[Close]

BLAST of CSPI01G34480 vs. NCBI nr
Match: gi|567912801|ref|XP_006448714.1| (hypothetical protein CICLE_v10017318mg [Citrus clementina])

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-26
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 13 GGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTA 72
          GGC RL +AL ECHKRV  GPAR S CRHLNR+LAECLVA ACP E+EAVR+ CSSGGTA
Sbjct: 8  GGCGRLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTA 67

Query: 73 LKRSQCEQAKFSLSFCLSS 92
          LKRSQC+QA+ +LS CLSS
Sbjct: 68 LKRSQCQQAQLALSVCLSS 86

The following BLAST results are available for this feature:

BLAST of CSPI01G34480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G34480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1_CUCSA	2.9e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1	[more]
W9SE28_9ROSA	3.0e-27	72.84	Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1	[more]
V4W734_9ROSI	4.3e-26	75.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017318mg PE=4 SV=1	[more]
A0A067GFF9_CITSI	4.3e-26	74.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1	[more]
A0A0S3RII1_PHAAN	7.4e-26	72.15	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G331100 PE=...	[more]

BLAST of CSPI01G34480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31175.1	4.9e-29	72.15	unknown protein	[more]

BLAST of CSPI01G34480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455409\|ref\|XP_004145445.1\|	4.1e-46	100.00	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
gi\|659118288\|ref\|XP_008459043.1\|	1.2e-42	93.62	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]	[more]
gi\|703150294\|ref\|XP_010109823.1\|	4.3e-27	72.84	hypothetical protein L484_018480 [Morus notabilis]	[more]
gi\|731371219\|ref\|XP_002277786.2\|	2.8e-26	75.00	PREDICTED: uncharacterized protein LOC100245750 [Vitis vinifera]	[more]
gi\|567912801\|ref\|XP_006448714.1\|	6.2e-26	75.95	hypothetical protein CICLE_v10017318mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G34480.1	CSPI01G34480.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G34480	Cla004619	Watermelon (97103) v1	cpiwmB045
CSPI01G34480	Csa1G702000	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G34480	MELO3C021755	Melon (DHL92) v3.5.1	cpimeB013
CSPI01G34480	ClCG01G009440	Watermelon (Charleston Gray)	cpiwcgB026
CSPI01G34480	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	cpilsiB034
CSPI01G34480	MELO3C021755.2	Melon (DHL92) v3.6.1	cpimedB022
CSPI01G34480	CsaV3_1G046330	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G34480	Cla97C01G009670	Watermelon (97103) v2	cpiwmbB011
CSPI01G34480	Bhi08G000733	Wax gourd	cpiwgoB031
CSPI01G34480	Cucsa.003920	Cucumber (Gy14) v1	cgycpiB036
CSPI01G34480	CmaCh18G005580	Cucurbita maxima (Rimu)	cmacpiB404
CSPI01G34480	CmoCh18G005350	Cucurbita moschata (Rifu)	cmocpiB390
CSPI01G34480	CmoCh13G004600	Cucurbita moschata (Rifu)	cmocpiB196
CSPI01G34480	Cp4.1LG09g06840	Cucurbita pepo (Zucchini)	cpecpiB019
CSPI01G34480	Carg26145	Silver-seed gourd	carcpiB0128
CSPI01G34480	Carg27044	Silver-seed gourd	carcpiB0994

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G34480	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G34480	Cucurbita maxima (Rimu)	cmacpiB209
CSPI01G34480	Watermelon (97103) v1	cpiwmB053
CSPI01G34480	Cucurbita pepo (Zucchini)	cpecpiB520
CSPI01G34480	Melon (DHL92) v3.6.1	cpimedB013