Carg27044 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27044
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	COX assembly mitochondrial protein
Location	Cucurbita_argyrosperma_scaffold_288 : 275875 .. 276159 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGAAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGGAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

mRNA sequence

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGAAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGGAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Coding sequence (CDS)

ATGGTACCAACCGGCAAAGCTCCGATCGGCGGTGACGGCGGCTGCGAGCGGCTGGAGAAGGCTCTCCGAGATTGCCACAAGCGACTACCAGAAGGTCCGGCGCGGCGGTCGGGCTGCTGGCACCTGAACCGATCTTTTGCGGAGTGCTTGGTGGCGACGGTGTGCCCTAACGAGGCGGAGGCGGTGCGAACTCTCTGCTCCAGCGGCGGAACCGCTCTGAAGAGATCGCAATGCGAGGAAGCTAAGTTTTCGTTCTCTTTATGTCTCTCTTCTCTCCAATTGTGA

Protein sequence

MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL

Homology

[Close]

BLAST of Carg27044 vs. NCBI nr
Match: XP_022955041.1 (uncharacterized protein LOC111457119 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-47
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLE+ALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 95
          AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 94

[Close]

BLAST of Carg27044 vs. NCBI nr
Match: XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 3.2e-47
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLE+ALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 95
          AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

[Close]

BLAST of Carg27044 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 1.0e-45
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          MVPTGKAPIGGDGGCERLE+ALRDCHKRLPEGPARRSGC HLNRSFAECLVATVCPNEAE
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 95
          AVRTLCSSGGTALKRSQCE+AKFSFSLCLSSLQL
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQL 94

[Close]

BLAST of Carg27044 vs. NCBI nr
Match: XP_004145445.1 (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus] >KGN66875.1 hypothetical protein Csa_1G702000 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-38
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLE+ALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCE+AKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Carg27044 vs. NCBI nr
Match: XP_022142592.1 (uncharacterized protein LOC111012670 [Momordica charantia])

HSP 1 Score: 162.2 bits (409), Expect = 8.8e-37
Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1   MVPTGKAPI--GGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNE 60
           M+PTG+API  GG GGCERLE+ALRDCH+R+P+GPARRS C HLNRS AECLVAT CPNE
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 61  AEAVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 95
           AEAVRTLCS+ GTALKRSQC++AKFS S CLSSLQL
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQL 109

[Close]

BLAST of Carg27044 vs. TAIR10
Match: AT1G31175.1 (unknown protein)

HSP 1 Score: 124.4 bits (311), Expect = 3.7e-29
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 15  CERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTALK 74
           C+RLE+AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 75  RSQCEEAKFSFSLCLSSLQ 94
           R QCE A+ S SLCLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

[Close]

BLAST of Carg27044 vs. TrEMBL
Match: tr|A0A0A0LYC1|A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-38
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          M+P G++P+GGDGGC+RLE+ALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCE+AKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Carg27044 vs. TrEMBL
Match: tr|A0A1S3C8S8|A0A1S3C8S8_CUCME (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MVPTGKAPIGGDGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60
          M+P G++P+ GD GCERLE+ALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+E E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 61 AVRTLCSSGGTALKRSQCEEAKFSFSLCLSSLQ 94
          AVRTLCSSGGTALKRSQCE+AKFS S CLSSLQ
Sbjct: 61 AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 93

[Close]

BLAST of Carg27044 vs. TrEMBL
Match: tr|W9SE28|W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.5e-28
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 4  TGKAPIGGD-GGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAV 63
          TG    G + GGCERL++AL DCH+RLP GPAR S C HLNR+ AECLV+  CP+E EA+
Sbjct: 5  TGIGGAGSEIGGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAI 64

Query: 64 RTLCSSGGTALKRSQCEEAKFSFSLCLSSLQL 95
          R+LCSS GTALKRSQC++A+ S SLCLSSLQL
Sbjct: 65 RSLCSSAGTALKRSQCQDAQLSLSLCLSSLQL 96

[Close]

BLAST of Carg27044 vs. TrEMBL
Match: tr|A0A0K9S104|A0A0K9S104_SPIOL (COX assembly mitochondrial protein OS=Spinacia oleracea OX=3562 GN=SOVF_005450 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.5e-27
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 13 GGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGTA 72
          GGCERL+ AL DCH+R+P GPAR SGC HLNR+F +CLVA +CP+E EAVR+LCSSGGTA
Sbjct: 12 GGCERLQNALYDCHRRMPAGPARNSGCRHLNRAFTDCLVAVICPSEIEAVRSLCSSGGTA 71

Query: 73 LKRSQCEEAKFSFSLCLSSLQ 94
          +KRSQC+EA+ S S+CLS  Q
Sbjct: 72 MKRSQCQEARLSLSVCLSQHQ 92

[Close]

BLAST of Carg27044 vs. TrEMBL
Match: tr|D7KKA0|D7KKA0_ARALL (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_313968 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.9e-26
Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 12  DGGCERLEKALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAEAVRTLCSSGGT 71
           D  C+RL++AL  CH+R+PEGPARRSGC HLN++FAEC+VA  CP E+EAVR+LCSSGGT
Sbjct: 21  DISCDRLQEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGT 80

Query: 72  ALKRSQCEEAKFSFSLCLSSLQ 94
           +LKR QCE+A+ S SLCLS  Q
Sbjct: 81  SLKRKQCEDAQLSLSLCLSRHQ 102

The following BLAST results are available for this feature:

BLAST of Carg27044 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955041.1	1.5e-47	98.94	uncharacterized protein LOC111457119 [Cucurbita moschata]	[more]
XP_022994930.1	3.2e-47	97.87	uncharacterized protein LOC111490507 [Cucurbita maxima]	[more]
XP_023542217.1	1.0e-45	96.81	uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]	[more]
XP_004145445.1	2.7e-38	81.72	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus] >KGN66875.1 hy...	[more]
XP_022142592.1	8.8e-37	80.21	uncharacterized protein LOC111012670 [Momordica charantia]	[more]

BLAST of Carg27044 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31175.1	3.7e-29	70.89	unknown protein	[more]

BLAST of Carg27044 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27044 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYC1\|A0A0A0LYC1_CUCSA	1.8e-38	81.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1	[more]
tr\|A0A1S3C8S8\|A0A1S3C8S8_CUCME	2.2e-36	79.57	uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=...	[more]
tr\|W9SE28\|W9SE28_9ROSA	8.5e-28	67.39	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018480 PE=4 SV=1	[more]
tr\|A0A0K9S104\|A0A0K9S104_SPIOL	2.5e-27	70.37	COX assembly mitochondrial protein OS=Spinacia oleracea OX=3562 GN=SOVF_005450 P...	[more]
tr\|D7KKA0\|D7KKA0_ARALL	7.9e-26	68.29	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27044-RA	Carg27044-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27044	Cla004619	Watermelon (97103) v1	carwmB0958
Carg27044	Csa1G702000	Cucumber (Chinese Long) v2	carcuB0973
Carg27044	ClCG01G009440	Watermelon (Charleston Gray)	carwcgB0933
Carg27044	CSPI01G34480	Wild cucumber (PI 183967)	carcpiB0994
Carg27044	CmaCh18G005580	Cucurbita maxima (Rimu)	carcmaB1314
Carg27044	CmoCh18G005350	Cucurbita moschata (Rifu)	carcmoB1283
Carg27044	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	carlsiB874
Carg27044	CsaV3_1G046330	Cucumber (Chinese Long) v3	carcucB1000
Carg27044	Cla97C01G009670	Watermelon (97103) v2	carwmbB1007
Carg27044	Bhi08G000733	Wax gourd	carwgoB1112

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None