Cla004619 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004619
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 25497827 .. 25498207 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGAAACCCTAGATCCTTGA

mRNA sequence

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGAAACCCTAGATCCTTGA

Coding sequence (CDS)

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGAAACCCTAGATCCTTGA

Protein sequence

MSSEESKLAETFSSVPNGVGPHCQKAKKEMLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSKPLSRDRSASKLSFRSLSVSHLSNFETLDP

Homology

[Close]

BLAST of Cla004619 vs. TrEMBL
Match: A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 30 MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
          MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 90 AVRSLCS 97
          AVR+LCS
Sbjct: 61 AVRTLCS 67

[Close]

BLAST of Cla004619 vs. TrEMBL
Match: W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-18
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 42 GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCS 97
          GGCERL++AL +CH+RLP GPAR SACRHLNRALAECLV+ ACP E EA+RSLCS
Sbjct: 15 GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCS 69

[Close]

BLAST of Cla004619 vs. TrEMBL
Match: Q9SA13_ARATH (At1g31175 OS=Arabidopsis thaliana GN=F28K20.13 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 44 CERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCS 97
          C+RLE+AL +CH+R+PEGPARRS CRHLN+A AEC+VA ACP E+EAVRSLCS
Sbjct: 34 CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCS 86

[Close]

BLAST of Cla004619 vs. TrEMBL
Match: D7KKA0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_313968 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 41 DGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCS 97
          D  C+RL++AL +CH+R+PEGPARRS CRHLN+A AEC+VA ACP E+EAVRSLCS
Sbjct: 21 DISCDRLQEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCS 76

[Close]

BLAST of Cla004619 vs. TrEMBL
Match: A0A067GFF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 42 GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCS 97
          GGCERL +AL ECHKR+  GPAR S CRHLNRALAECLVA ACP E+E+VRS CS
Sbjct: 8  GGCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESESVRSFCS 62

[Close]

BLAST of Cla004619 vs. NCBI nr
Match: gi|659118288|ref|XP_008459043.1| (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 30 MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
          MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE E
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 90 AVRSLCS 97
          AVR+LCS
Sbjct: 61 AVRTLCS 67

[Close]

BLAST of Cla004619 vs. NCBI nr
Match: gi|449455409|ref|XP_004145445.1| (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-27
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 30 MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
          MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAE
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 90 AVRSLCS 97
          AVR+LCS
Sbjct: 61 AVRTLCS 67

[Close]

BLAST of Cla004619 vs. NCBI nr
Match: gi|703150294|ref|XP_010109823.1| (hypothetical protein L484_018480 [Morus notabilis])

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-18
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 42 GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCS 97
          GGCERL++AL +CH+RLP GPAR SACRHLNRALAECLV+ ACP E EA+RSLCS
Sbjct: 15 GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCS 69

[Close]

BLAST of Cla004619 vs. NCBI nr
Match: gi|1009114438|ref|XP_015873688.1| (PREDICTED: uncharacterized protein LOC107410731 [Ziziphus jujuba])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 43  GCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSKP-LSR 102
           GCERL++AL ECH+R+P GPAR SACRHLNRA A+CLV+ ACP E EAVRSLCS    + 
Sbjct: 17  GCERLQRALIECHRRMPVGPARESACRHLNRATAQCLVSVACPEECEAVRSLCSSSGTAL 76

Query: 103 DRSASKLSFRSLSVSHLSNFETLDP 127
            RS  + +  SLSV  LS+ +  +P
Sbjct: 77  KRSQCQAAQVSLSVC-LSSCQLSNP 100

[Close]

BLAST of Cla004619 vs. NCBI nr
Match: gi|30692343|ref|NP_683340.2| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 44 CERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCS 97
          C+RLE+AL +CH+R+PEGPARRS CRHLN+A AEC+VA ACP E+EAVRSLCS
Sbjct: 34 CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCS 86

The following BLAST results are available for this feature:

BLAST of Cla004619 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1_CUCSA	1.8e-27	88.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1	[more]
W9SE28_9ROSA	4.4e-18	78.18	Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1	[more]
Q9SA13_ARATH	1.1e-16	75.47	At1g31175 OS=Arabidopsis thaliana GN=F28K20.13 PE=2 SV=1	[more]
D7KKA0_ARALL	1.4e-16	71.43	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A067GFF9_CITSI	1.9e-16	76.36	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1	[more]

BLAST of Cla004619 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118288\|ref\|XP_008459043.1\|	1.2e-27	88.06	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]	[more]
gi\|449455409\|ref\|XP_004145445.1\|	2.6e-27	88.06	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
gi\|703150294\|ref\|XP_010109823.1\|	6.3e-18	78.18	hypothetical protein L484_018480 [Morus notabilis]	[more]
gi\|1009114438\|ref\|XP_015873688.1\|	1.2e-16	58.82	PREDICTED: uncharacterized protein LOC107410731 [Ziziphus jujuba]	[more]
gi\|30692343\|ref\|NP_683340.2\|	1.6e-16	75.47	uncharacterized protein [Arabidopsis thaliana]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU04998	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU09809	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004619	Cla004619.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU09809	WMU09809	transcribed_cluster
WMU04998	WMU04998	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004619	Cla97C01G009670	Watermelon (97103) v2	wmwmbB247
Cla004619	Csa1G702000	Cucumber (Chinese Long) v2	cuwmB044
Cla004619	MELO3C021755	Melon (DHL92) v3.5.1	mewmB156
Cla004619	ClCG01G009440	Watermelon (Charleston Gray)	wcgwmB157
Cla004619	CSPI01G34480	Wild cucumber (PI 183967)	cpiwmB045
Cla004619	Cucsa.003920	Cucumber (Gy14) v1	cgywmB037
Cla004619	CmaCh18G005580	Cucurbita maxima (Rimu)	cmawmB385
Cla004619	CmoCh13G004600	Cucurbita moschata (Rifu)	cmowmB182
Cla004619	CmoCh18G005350	Cucurbita moschata (Rifu)	cmowmB377
Cla004619	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	lsiwmB206
Cla004619	Cp4.1LG09g06840	Cucurbita pepo (Zucchini)	cpewmB034
Cla004619	MELO3C021755.2	Melon (DHL92) v3.6.1	medwmB160
Cla004619	Carg26145	Silver-seed gourd	carwmB0115
Cla004619	Carg27044	Silver-seed gourd	carwmB0958
Cla004619	CsaV3_1G046330	Cucumber (Chinese Long) v3	cucwmB051
Cla004619	Bhi08G000733	Wax gourd	wgowmB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004619	Cucumber (Chinese Long) v2	cuwmB050
Cla004619	Cucurbita pepo (Zucchini)	cpewmB519
Cla004619	Cucumber (Gy14) v2	cgybwmB050
Cla004619	Cucumber (Gy14) v2	cgybwmB045
Cla004619	Melon (DHL92) v3.6.1	medwmB151
Cla004619	Cucurbita maxima (Rimu)	cmawmB195