ClCG01G009440 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G009440
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 13198234 .. 13198605 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGA

mRNA sequence

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGA

Coding sequence (CDS)

ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGA

Protein sequence

MSSEESKLAETFSSVPNGVGPHCQKAKKEMLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF

Homology

[Close]

BLAST of ClCG01G009440 vs. TrEMBL
Match: A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-43
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 1


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAE
Sbjct: 1   MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440 vs. TrEMBL
Match: W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 42  GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTA 101
           GGCERL++AL +CH+RLP GPAR SACRHLNRALAECLV+ ACP E EA+RSLCSS GTA
Sbjct: 15  GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCSSAGTA 74

Query: 102 LKRSQCEQAKFSLSFCLSSLQ 123
           LKRSQC+ A+ SLS CLSSLQ
Sbjct: 75  LKRSQCQDAQLSLSLCLSSLQ 95

[Close]

BLAST of ClCG01G009440 vs. TrEMBL
Match: A0A067GFF9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.8e-28
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 42  GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTA 101
           GGCERL +AL ECHKR+  GPAR S CRHLNRALAECLVA ACP E+E+VRS CSSGGTA
Sbjct: 8   GGCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESESVRSFCSSGGTA 67

Query: 102 LKRSQCEQAKFSLSFCLSS 121
           LKRSQC+QA+ +LS CLSS
Sbjct: 68  LKRSQCQQAQLALSVCLSS 86

[Close]

BLAST of ClCG01G009440 vs. TrEMBL
Match: V4W734_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017318mg PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-27
Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 42  GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTA 101
           GGC RL +AL ECHKR+  GPAR S CRHLNRALAECLVA ACP E+EAVRS CSSGGTA
Sbjct: 8   GGCGRLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESEAVRSFCSSGGTA 67

Query: 102 LKRSQCEQAKFSLSFCLSS 121
           LKRSQC+QA+ +LS CLSS
Sbjct: 68  LKRSQCQQAQLALSVCLSS 86

[Close]

BLAST of ClCG01G009440 vs. TrEMBL
Match: A0A0K9S104_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005450 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-27
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1


Query: 42  GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTA 101
           GGCERL+ AL +CH+R+P GPAR S CRHLNRA  +CLVA  CPSE EAVRSLCSSGGTA
Sbjct: 12  GGCERLQNALYDCHRRMPAGPARNSGCRHLNRAFTDCLVAVICPSEIEAVRSLCSSGGTA 71

Query: 102 LKRSQCEQAKFSLSFCLSSLQ 123
           +KRSQC++A+ SLS CLS  Q
Sbjct: 72  MKRSQCQEARLSLSVCLSQHQ 92

[Close]

BLAST of ClCG01G009440 vs. TAIR10
Match: AT1G31175.1 (AT1G31175.1 unknown protein)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-30
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 44  CERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALK 103
           C+RLE+AL +CH+R+PEGPARRS CRHLN+A AEC+VA ACP E+EAVRSLCSSGGT+LK
Sbjct: 34  CDRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEACPEESEAVRSLCSSGGTSLK 93

Query: 104 RSQCEQAKFSLSFCLSSLQ 123
           R QCE A+ SLS CLS  Q
Sbjct: 94  RKQCEYAQLSLSLCLSRHQ 112

[Close]

BLAST of ClCG01G009440 vs. NCBI nr
Match: gi|659118288|ref|XP_008459043.1| (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-43
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440 vs. NCBI nr
Match: gi|449455409|ref|XP_004145445.1| (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 4.3e-43
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 1


Query: 30  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAE 89
           MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAE
Sbjct: 1   MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 90  AVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 124
           AVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of ClCG01G009440 vs. NCBI nr
Match: gi|703150294|ref|XP_010109823.1| (hypothetical protein L484_018480 [Morus notabilis])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 42  GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTA 101
           GGCERL++AL +CH+RLP GPAR SACRHLNRALAECLV+ ACP E EA+RSLCSS GTA
Sbjct: 15  GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAACPDECEAIRSLCSSAGTA 74

Query: 102 LKRSQCEQAKFSLSFCLSSLQ 123
           LKRSQC+ A+ SLS CLSSLQ
Sbjct: 75  LKRSQCQDAQLSLSLCLSSLQ 95

[Close]

BLAST of ClCG01G009440 vs. NCBI nr
Match: gi|568828267|ref|XP_006468465.1| (PREDICTED: uncharacterized protein LOC102627503 [Citrus sinensis])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 42  GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTA 101
           GGCERL +AL ECHKR+  GPAR S CRHLNRALAECLVA ACP E+E+VRS CSSGGTA
Sbjct: 8   GGCERLHRALCECHKRVASGPARESVCRHLNRALAECLVADACPEESESVRSFCSSGGTA 67

Query: 102 LKRSQCEQAKFSLSFCLSS 121
           LKRSQC+QA+ +LS CLSS
Sbjct: 68  LKRSQCQQAQLALSVCLSS 86

[Close]

BLAST of ClCG01G009440 vs. NCBI nr
Match: gi|731371219|ref|XP_002277786.2| (PREDICTED: uncharacterized protein LOC100245750 [Vitis vinifera])

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 1


Query: 43  GCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTAL 102
           GCERL QAL ECH+R+  GPAR +ACRHLNR+LAEC+VA ACP+E+EAVRSLCSSGGTAL
Sbjct: 19  GCERLHQALCECHRRIAAGPARDAACRHLNRSLAECMVALACPAESEAVRSLCSSGGTAL 78

Query: 103 KRSQCEQAKFSLSFCLSSLQ 123
           KRSQC+QA+ SL+ CLSS Q
Sbjct: 79  KRSQCQQAQLSLAVCLSSHQ 98

The following BLAST results are available for this feature:

BLAST of ClCG01G009440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1_CUCSA	3.0e-43	91.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G702000 PE=4 SV=1	[more]
W9SE28_9ROSA	1.1e-29	77.78	Uncharacterized protein OS=Morus notabilis GN=L484_018480 PE=4 SV=1	[more]
A0A067GFF9_CITSI	7.8e-28	77.22	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034624mg PE=4 SV=1	[more]
V4W734_9ROSI	2.3e-27	77.22	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017318mg PE=4 SV=1	[more]
A0A0K9S104_SPIOL	3.0e-27	71.60	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005450 PE=4 SV=1	[more]

BLAST of ClCG01G009440 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31175.1	2.6e-30	73.42	unknown protein	[more]

BLAST of ClCG01G009440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118288\|ref\|XP_008459043.1\|	1.9e-43	91.49	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]	[more]
gi\|449455409\|ref\|XP_004145445.1\|	4.3e-43	91.49	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
gi\|703150294\|ref\|XP_010109823.1\|	1.6e-29	77.78	hypothetical protein L484_018480 [Morus notabilis]	[more]
gi\|568828267\|ref\|XP_006468465.1\|	1.1e-27	77.22	PREDICTED: uncharacterized protein LOC102627503 [Citrus sinensis]	[more]
gi\|731371219\|ref\|XP_002277786.2\|	1.5e-27	76.25	PREDICTED: uncharacterized protein LOC100245750 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013892	Cyt_c_biogenesis_Cmc1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G009440.1	ClCG01G009440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PFAM	PF08583	Cmc1	coord: 44..83 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G009440	Csa1G702000	Cucumber (Chinese Long) v2	cuwcgB023
ClCG01G009440	MELO3C021755	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G009440	Cla004619	Watermelon (97103) v1	wcgwmB157
ClCG01G009440	Cla97C01G009670	Watermelon (97103) v2	wcgwmbB089
ClCG01G009440	Bhi08G000733	Wax gourd	wcgwgoB240
ClCG01G009440	CSPI01G34480	Wild cucumber (PI 183967)	cpiwcgB026
ClCG01G009440	Cucsa.003920	Cucumber (Gy14) v1	cgywcgB039
ClCG01G009440	CmaCh18G005580	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G009440	CmoCh13G004600	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G009440	CmoCh18G005350	Cucurbita moschata (Rifu)	cmowcgB340
ClCG01G009440	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G009440	Cp4.1LG09g06840	Cucurbita pepo (Zucchini)	cpewcgB028
ClCG01G009440	Carg26145	Silver-seed gourd	carwcgB0116
ClCG01G009440	Carg27044	Silver-seed gourd	carwcgB0933
ClCG01G009440	CsaV3_1G046330	Cucumber (Chinese Long) v3	cucwcgB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G009440	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G009440	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G009440	Cucumber (Gy14) v2	cgybwcgB022
ClCG01G009440	Melon (DHL92) v3.6.1	medwcgB132