Carg26145 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26145
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	COX assembly mitochondrial protein
Location	Cucurbita_argyrosperma_scaffold_383 : 109825 .. 110013 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAGAAAAAGATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTGTTTGATTAG

mRNA sequence

GGAAAGAAAAAGATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTGTTTGATTAG

Coding sequence (CDS)

GGAAAGAAAAAGATGTTACCAACCGGCAAAGCTCCGATCGACGGTGACGGCGGCTACGAGCGGTTAGAGCAGGCTCTCCGAGAGAACCACAACCGATTGCCAGAAGGTCCGGCGCGGCGCTCGGCCTGCCGAAACCTGAACCGATCTCTTGCAGAGTGCGTGGTGGCGACGGCTTGGTTGTTTGATTAG

Protein sequence

GKKKMLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATAWLFD

Homology

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BLAST of Carg26145 vs. NCBI nr
Match: XP_004145445.1 (PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus] >KGN66875.1 hypothetical protein Csa_1G702000 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

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BLAST of Carg26145 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 58
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVAT 53

[Close]

BLAST of Carg26145 vs. NCBI nr
Match: XP_022955041.1 (uncharacterized protein LOC111457119 [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-15
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 58
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVAT 53

[Close]

BLAST of Carg26145 vs. NCBI nr
Match: XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-15
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVAT 58
          M+PTGKAPI GDGG ERLEQALR+ H RLPEGPARRS C +LNRS AEC+VAT
Sbjct: 1  MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVAT 53

[Close]

BLAST of Carg26145 vs. NCBI nr
Match: XP_008459043.1 (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GD G ERLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of Carg26145 vs. TAIR10
Match: AT1G31175.1 (unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-09
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 20 ERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          +RLE+AL + H R+PEGPARRS CR+LN++ AECVVA A
Sbjct: 35 DRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEA 73

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BLAST of Carg26145 vs. TrEMBL
Match: tr|A0A0A0LYC1|A0A0A0LYC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GDGG +RLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of Carg26145 vs. TrEMBL
Match: tr|A0A1S3C8S8|A0A1S3C8S8_CUCME (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 5  MLPTGKAPIDGDGGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          MLP G++P+ GD G ERLEQALRE H R+PEGPARRSACR+LNRSLAEC+VATA
Sbjct: 1  MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATA 54

[Close]

BLAST of Carg26145 vs. TrEMBL
Match: tr|W9SE28|W9SE28_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018480 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 17 GGYERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          GG ERL++AL + H RLP GPAR SACR+LNR+LAEC+V+ A
Sbjct: 15 GGCERLQRALGDCHRRLPPGPARESACRHLNRALAECLVSAA 56

[Close]

BLAST of Carg26145 vs. TrEMBL
Match: tr|Q9SA13|Q9SA13_ARATH (At1g31175 OS=Arabidopsis thaliana OX=3702 GN=F28K20.13 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-06
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 20 ERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          +RLE+AL + H R+PEGPARRS CR+LN++ AECVVA A
Sbjct: 35 DRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEA 73

[Close]

BLAST of Carg26145 vs. TrEMBL
Match: tr|A0A178WJ80|A0A178WJ80_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g31800 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-06
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 20 ERLEQALRENHNRLPEGPARRSACRNLNRSLAECVVATA 59
          +RLE+AL + H R+PEGPARRS CR+LN++ AECVVA A
Sbjct: 35 DRLEEALLQCHRRMPEGPARRSGCRHLNKAFAECVVAEA 73

The following BLAST results are available for this feature:

BLAST of Carg26145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145445.1	2.8e-15	77.78	PREDICTED: uncharacterized protein LOC101219184 [Cucumis sativus] >KGN66875.1 hy...	[more]
XP_023542217.1	6.3e-15	79.25	uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]	[more]
XP_022955041.1	8.2e-15	79.25	uncharacterized protein LOC111457119 [Cucurbita moschata]	[more]
XP_022994930.1	8.2e-15	79.25	uncharacterized protein LOC111490507 [Cucurbita maxima]	[more]
XP_008459043.1	1.8e-14	77.78	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]	[more]

BLAST of Carg26145 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31175.1	2.2e-09	66.67	unknown protein	[more]

BLAST of Carg26145 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26145 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYC1\|A0A0A0LYC1_CUCSA	1.9e-15	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1	[more]
tr\|A0A1S3C8S8\|A0A1S3C8S8_CUCME	1.2e-14	77.78	uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=...	[more]
tr\|W9SE28\|W9SE28_9ROSA	1.6e-06	66.67	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018480 PE=4 SV=1	[more]
tr\|Q9SA13\|Q9SA13_ARATH	7.8e-06	66.67	At1g31175 OS=Arabidopsis thaliana OX=3702 GN=F28K20.13 PE=2 SV=1	[more]
tr\|A0A178WJ80\|A0A178WJ80_ARATH	7.8e-06	66.67	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g31800 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26145-RA	Carg26145-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26145	Cla004619	Watermelon (97103) v1	carwmB0115
Carg26145	Csa1G702000	Cucumber (Chinese Long) v2	carcuB0123
Carg26145	MELO3C021755	Melon (DHL92) v3.5.1	carmeB0119
Carg26145	ClCG01G009440	Watermelon (Charleston Gray)	carwcgB0116
Carg26145	CSPI01G34480	Wild cucumber (PI 183967)	carcpiB0128
Carg26145	CmaCh18G005580	Cucurbita maxima (Rimu)	carcmaB0152
Carg26145	CmoCh18G005350	Cucurbita moschata (Rifu)	carcmoB0161
Carg26145	CmoCh13G004600	Cucurbita moschata (Rifu)	carcmoB0160
Carg26145	Lsi02G010480	Bottle gourd (USVL1VR-Ls)	carlsiB104
Carg26145	Cp4.1LG09g06840	Cucurbita pepo (Zucchini)	carcpeB0169
Carg26145	MELO3C021755.2	Melon (DHL92) v3.6.1	carmedB0122
Carg26145	CsaV3_1G046330	Cucumber (Chinese Long) v3	carcucB0132
Carg26145	Cla97C01G009670	Watermelon (97103) v2	carwmbB0121
Carg26145	Bhi08G000733	Wax gourd	carwgoB0137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None