Csa1G136770 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G136770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionHistone H2B; contains IPR000558 (Histone H2B), IPR009072 (Histone-fold)
LocationChr1 : 9540100 .. 9541226 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGTTAGAGACTTAAGAGTATTGATATAATTTAACATGGTATTATTATAATTAAATCAATTTTTGACAATGAATTTGTTAAGTGACATCAATTTGAACTCTTTTAACTTTCGGCCCACTAATTTTCTAACAAACAACAATTTTTCACTCATTGATGCATGTAGTTTCATATTGTATATGTTTTATAATTAATTGAACACATAAAGGTGTAGCAAACATACCATCATGTCCAAATATATAGAACGACGAATTTGCAGATATAATTGTGTTTGAGTTGAATGAATAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTACATACATACATACATATATATANNNNNNNNNNNNNNNNNNNNATATATATATTCAAATTATTATACAATCATTTTTATTATTATTTTATTAATATTATAATAAATTAATTGATAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Protein sequence

MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP*
Homology
[Close]
BLAST of Csa1G136770 vs. Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.6e-36
Identity = 98/257 (38.13%), Postives = 145/257 (56.42%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEK-------------ESQDLTQEPDMAET- 60
           M PR+ + V    V    +VVEET++V V E+             E+QDLT    + E  
Sbjct: 1   MAPRKPKVVS---VTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  ---------PDGGGEMFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAV 120
                    PD       R++PV E     + P+      D    +  ++  ++ ++ + 
Sbjct: 61  TTVEIPVEVPD------ERSLPVGENVTTVKIPVD---DRDESSPQPPETPVEVRDEPSP 120

Query: 121 TPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHP 180
            P   P  +   +G  ++  K EKK+E K+ K++ K+    G  + Y+RYV+KV+KQVHP
Sbjct: 121 QPPETPASKS--EGTLKKTDKVEKKQENKKKKKKKKRDDLAG--DEYRRYVYKVMKQVHP 180

Query: 181 EVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHA 235
           ++GI+ +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRLVLPGEL +HA
Sbjct: 181 DLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHA 240

[Close]
BLAST of Csa1G136770 vs. Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 4.3e-31
Identity = 71/146 (48.63%), Postives = 98/146 (67.12%), Query Frame = 1 

Query: 89  SQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKEKKREI----KEGKRRSKKSGGGGGREGY 148
           SQ  E   V  E +PK  K  K + ++   K+  +E     ++G ++SKK       E Y
Sbjct: 11  SQAAEAPEVKAEAKPKAVKAPKKKEKKAPAKKVAKEPSAGGEDGDKKSKKKAKVAKSETY 70

Query: 149 KRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGA 208
           K Y++KVLKQVHP+ GIS +AM I+N+F+ND+F+++A EA+KLS+Y    T++SREIQ A
Sbjct: 71  KLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTA 130

Query: 209 VRLVLPGELGKHAIAEGTKAVSNYVS 231
           VRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 131 VRLVLPGELAKHAVSEGTKAVTKFTS 156

[Close]
BLAST of Csa1G136770 vs. Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.6e-31
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 1 

Query: 100 EMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRS---KKSGGGGGR---EGYKRYVFKVLK 159
           E EP   K +K    +K K EK+    +G++ S   KK+G   G+   E YK Y+FKVLK
Sbjct: 16  EEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLK 75

Query: 160 QVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGEL 219
           QVHP++GIS +AM I+N+F+ND+F++LA EA KL++Y    T++SREIQ AVRLVLPGEL
Sbjct: 76  QVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGEL 135

Query: 220 GKHAIAEGTKAVSNYVS 231
            KHA++EGTKAV+ + S
Sbjct: 136 AKHAVSEGTKAVTKFTS 152

[Close]
BLAST of Csa1G136770 vs. Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = 1 

Query: 87  STSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKR 146
           +T++   +     E +PK  K  K  ++   KK  K    +G+++ KK       E YK 
Sbjct: 10  ATAEAGAEAPAKAEAKPKAEKAAKKAKKEPSKKAAKEPKGDGEKKDKKKKKSAV-ETYKL 69

Query: 147 YVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVR 206
           Y++KVLKQVHP+ GIS +AM I+N+F+ND+F+++A EA+KLS+Y    T++SREIQ AVR
Sbjct: 70  YIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVR 129

Query: 207 LVLPGELGKHAIAEGTKAVSNYVS 231
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 130 LVLPGELAKHAVSEGTKAVTKFTS 152

[Close]
BLAST of Csa1G136770 vs. Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-30
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 1 

Query: 87  STSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKR 146
           +T +   +     E +PK  K  K  ++   KK  K    +G+++ KK       E YK 
Sbjct: 14  ATQEAGVEATAKAEAKPKAEKAAKKAKKEPAKKAAKEPKGDGEKKDKKKKSAV--ETYKL 73

Query: 147 YVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVR 206
           Y++KVLKQVHP+ GIS +AM I+N+F+ND+F+++A EA+KLS+Y    T++SREIQ AVR
Sbjct: 74  YIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVR 133

Query: 207 LVLPGELGKHAIAEGTKAVSNYVS 231
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 134 LVLPGELAKHAVSEGTKAVTKFTS 155

[Close]
BLAST of Csa1G136770 vs. TrEMBL
Match: A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 7.4e-131
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240

Query: 241 P 242
           P
Sbjct: 241 P 241

[Close]
BLAST of Csa1G136770 vs. TrEMBL
Match: A0A067L694_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05414 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.1e-47
Identity = 119/260 (45.77%), Postives = 162/260 (62.31%), Query Frame = 1 

Query: 1   MPPRRS----RRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPD--GGGEMF 60
           M P+RS    ++V+G+V+R+T R+++ETV+V+V+E + Q+ TQE    ET +     E F
Sbjct: 1   MAPKRSGKKKKKVIGTVLRSTRRIIKETVEVSVIEGDPQESTQEYQSQETEEIAANKEPF 60

Query: 61  RRTVPVEE------IKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKG 120
            RT+PVEE       K + ++ I     ED  LR   D + + +       E E    K 
Sbjct: 61  IRTIPVEEGVHERDDKENEEEAIEIS-EEDISLRDQEDFSKKGSASKENLQEQEDLSTKD 120

Query: 121 KKGRRR--------RKKKKEKKREIKEGKRRSKKSGGGGGRE--GYKRYVFKVLKQVHPE 180
             G           +K++KEK ++ K  +R+ K+ G G GRE  GYKRYVFKVLKQVHPE
Sbjct: 121 TTGEENVQEQERPIKKEEKEKTQQEKGQERKKKRKGRGVGREREGYKRYVFKVLKQVHPE 180

Query: 181 VGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAI 239
           + IS  AM I+NN M DMF+R+  EA KLS Y    TLSSREIQ AV+LVLPGELG+HAI
Sbjct: 181 LKISSMAMSIINNLMKDMFERIVYEAAKLSDYIHRTTLSSREIQDAVKLVLPGELGRHAI 240

[Close]
BLAST of Csa1G136770 vs. TrEMBL
Match: A0A072VBE2_MEDTR (Core histone H2A/H2B/H3/H4 OS=Medicago truncatula GN=MTR_2g084480 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 110/235 (46.81%), Postives = 147/235 (62.55%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           M P+ +++VV   VR+T +VV+E+VQV+VV    +         E     G   ++    
Sbjct: 1   MAPKSAKKVV---VRSTRKVVQESVQVSVVSSHKRSTRGNNKDVEIDKDAGNATQQ---- 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDS-TSQLTEDTAVTPE---MEPKIRKGKKGRRRRK 120
           E ++  P Q ++    ED      T + TS+ T +   TP    MEPK     K + ++ 
Sbjct: 61  EHVRIIPVQEVTSQTKEDTNTNTNTTTVTSEDTTNQENTPNDATMEPKTPLSNKEQEKKV 120

Query: 121 KKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDM 180
           + KE   +   GK + KK  G    EGY+RYV++VLKQVHP++GIS QAM ILNN MNDM
Sbjct: 121 RTKEGGND---GKGKRKKKRGRRMGEGYQRYVYRVLKQVHPQMGISSQAMTILNNLMNDM 180

Query: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY 232
           F++LA+EA KL+ YT  MTL+SREIQGAV+LVLPGELGKHAIAEG KAV+NYVSY
Sbjct: 181 FEKLADEAAKLTAYTKHMTLTSREIQGAVKLVLPGELGKHAIAEGAKAVTNYVSY 225

[Close]
BLAST of Csa1G136770 vs. TrEMBL
Match: A0A0S3SC84_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G174200 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42
Identity = 112/232 (48.28%), Postives = 146/232 (62.93%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           M P+R  ++V   VR+T +VVE +VQV+VV   S+  T+     E  +GG E     +PV
Sbjct: 1   MAPKRGEKLV---VRSTKKVVESSVQVSVVSTGSRRQTRGNKETEEAEGGKEHVM-VIPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           EE+  +P+       S   E  +   + +   ED  V  ++E K  K +    + +K+KE
Sbjct: 61  EEV--NPEARKDSSTSAITEGNKGEKNNTG--EDGGV--QIEEKENKVENEGEKDEKEKE 120

Query: 121 KKREIKEGKRRSK-KSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQR 180
           K +    GK R K K  G    EGY+RYV++VLKQVHPE+GIS + M +LNN MNDMF+R
Sbjct: 121 KAKIPSNGKERKKGKKKGRKSVEGYQRYVYRVLKQVHPEMGISAKCMTVLNNLMNDMFER 180

Query: 181 LAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY 232
           LA EA KL  YTG MTLSSREIQGAV+LVLPGELGKHAIAEG KAV+ + SY
Sbjct: 181 LAGEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNKFTSY 222

[Close]
BLAST of Csa1G136770 vs. TrEMBL
Match: A0A0L9V6L0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g145000 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.7e-42
Identity = 112/232 (48.28%), Postives = 146/232 (62.93%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           M P+R  ++V   VR+T +VVE +VQV+VV   S+  T+     E  +GG E     +PV
Sbjct: 1   MAPKRGEKLV---VRSTKKVVESSVQVSVVSTGSRRQTRGNKETEEAEGGKEHVM-VIPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           EE+  +P+       S   E  +   + +   ED  V  ++E K  K +    + +K+KE
Sbjct: 61  EEV--NPEARKDSSTSAITEGNKGEKNNTG--EDGGV--QIEEKENKVENEGEKDEKEKE 120

Query: 121 KKREIKEGKRRSK-KSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQR 180
           K +    GK R K K  G    EGY+RYV++VLKQVHPE+GIS + M +LNN MNDMF+R
Sbjct: 121 KAKIPSNGKERKKGKKKGRKSVEGYQRYVYRVLKQVHPEMGISAKCMTVLNNLMNDMFER 180

Query: 181 LAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY 232
           LA EA KL  YTG MTLSSREIQGAV+LVLPGELGKHAIAEG KAV+ + SY
Sbjct: 181 LAGEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNKFTSY 222

[Close]
BLAST of Csa1G136770 vs. TAIR10
Match: AT1G08170.1 (AT1G08170.1 Histone superfamily protein)

HSP 1 Score: 152.1 bits (383), Expect = 4.3e-37
Identity = 98/257 (38.13%), Postives = 145/257 (56.42%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEK-------------ESQDLTQEPDMAET- 60
           M PR+ + V    V    +VVEET++V V E+             E+QDLT    + E  
Sbjct: 1   MAPRKPKVVS---VTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  ---------PDGGGEMFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAV 120
                    PD       R++PV E     + P+      D    +  ++  ++ ++ + 
Sbjct: 61  TTVEIPVEVPD------ERSLPVGENVTTVKIPVD---DRDESSPQPPETPVEVRDEPSP 120

Query: 121 TPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHP 180
            P   P  +   +G  ++  K EKK+E K+ K++ K+    G  + Y+RYV+KV+KQVHP
Sbjct: 121 QPPETPASKS--EGTLKKTDKVEKKQENKKKKKKKKRDDLAG--DEYRRYVYKVMKQVHP 180

Query: 181 EVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHA 235
           ++GI+ +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRLVLPGEL +HA
Sbjct: 181 DLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHA 240

[Close]
BLAST of Csa1G136770 vs. TAIR10
Match: AT3G53650.1 (AT3G53650.1 Histone superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-31
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 1 

Query: 100 EMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEV 159
           E +P  +K  +     K  K +K+  KEG    KK       E YK Y+FKVLKQVHP++
Sbjct: 7   EKKPAGKKPAEKAPAEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVHPDI 66

Query: 160 GISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 219
           GISG+AM I+N+F+ND+F++LA+E+++L++Y    T++SREIQ AVRLVLPGEL KHA++
Sbjct: 67  GISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVS 126

Query: 220 EGTKAVSNYVS 231
           EGTKAV+ + S
Sbjct: 127 EGTKAVTKFTS 137

[Close]
BLAST of Csa1G136770 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-31
Identity = 69/140 (49.29%), Postives = 98/140 (70.00%), Query Frame = 1 

Query: 100 EMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGR---------EGYKRYVFK 159
           E +P   K  + + + +K   +K+  K GK+  K++G GG +         E YK Y+FK
Sbjct: 11  EKKPASEKPVEEKSKAEKAPAEKKP-KAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFK 70

Query: 160 VLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLP 219
           VLKQVHP++GIS +AM I+N+F+ND+F++LA+EA+KL++Y    T++SREIQ AVRLVLP
Sbjct: 71  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 130

Query: 220 GELGKHAIAEGTKAVSNYVS 231
           GEL KHA++EGTKAV+ + S
Sbjct: 131 GELAKHAVSEGTKAVTKFTS 149

[Close]
BLAST of Csa1G136770 vs. TAIR10
Match: AT5G22880.1 (AT5G22880.1 histone B2)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-31
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 1 

Query: 98  TPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHP 157
           TP  EP     KK +  +K  KE      + K+RSKK+      E YK Y+FKVLKQVHP
Sbjct: 17  TPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNV-----ETYKIYIFKVLKQVHP 76

Query: 158 EVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHA 217
           ++GIS +AM I+N+F+ND+F++LA E++KL++Y    T++SREIQ AVRLVLPGEL KHA
Sbjct: 77  DIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHA 136

Query: 218 IAEGTKAVSNYVS 231
           ++EGTKAV+ + S
Sbjct: 137 VSEGTKAVTKFTS 144

[Close]
BLAST of Csa1G136770 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-31
Identity = 72/144 (50.00%), Postives = 98/144 (68.06%), Query Frame = 1 

Query: 101 MEPKIRK--GKKGRRRRKKKKEK---KREIKEGKRRSKKSGGGGGR---------EGYKR 160
           M PK  K   +K     K K EK   +++ K GK+  K++G GG +         E YK 
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 161 YVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVR 220
           Y+FKVLKQVHP++GIS +AM I+N+F+ND+F++LA E++KL++Y    T++SREIQ AVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 221 LVLPGELGKHAIAEGTKAVSNYVS 231
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTS 144

[Close]
BLAST of Csa1G136770 vs. NCBI nr
Match: gi|700209774|gb|KGN64870.1| (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-130
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240

Query: 241 P 242
           P
Sbjct: 241 P 241

[Close]
BLAST of Csa1G136770 vs. NCBI nr
Match: gi|659071869|ref|XP_008462313.1| (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 420.6 bits (1080), Expect = 1.8e-114
Identity = 220/242 (90.91%), Postives = 229/242 (94.63%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKAH--PQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP+++KGKKG RR KKK
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGGRR-KKK 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           KEKKREIKEGKRRSK S G  GREGYKRYVFKVLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 KEKKREIKEGKRRSKNSSGS-GREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 240

[Close]
BLAST of Csa1G136770 vs. NCBI nr
Match: gi|778664983|ref|XP_011648456.1| (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.4e-111
Identity = 216/241 (89.63%), Postives = 216/241 (89.63%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTA                        
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTA------------------------ 120

Query: 121 KKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
            KREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 -KREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 216

Query: 241 P 242
           P
Sbjct: 241 P 216

[Close]
BLAST of Csa1G136770 vs. NCBI nr
Match: gi|720036366|ref|XP_010267330.1| (PREDICTED: late histone H2B.2.2-like [Nelumbo nucifera])

HSP 1 Score: 196.8 bits (499), Expect = 4.3e-47
Identity = 121/245 (49.39%), Postives = 167/245 (68.16%), Query Frame = 1 

Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVE-KESQDLTQEPDMAETPDGGGEMFRRTVP 60
           M P+RS++VVG++V+TT   + ETV+VAVV+ K+++  T++  + E+     E  R  V 
Sbjct: 1   MAPKRSKKVVGTIVKTTR--IRETVRVAVVDGKKAEGETEKETIVESTK---EPIR--VA 60

Query: 61  VEEIKAHPQQPISHPVSEDFELRRATDSTSQLTED--TAVTPEMEPKIRKGKKGRRRRKK 120
           +E+++A   Q +        E RR         ED   AV+PE   + ++ K  +  +++
Sbjct: 61  IEDVRAPEDQLVQK------EPRRVMVDDKVQEEDGAVAVSPETRERGQQEKINQEGKEE 120

Query: 121 KK-EKKREIKEGKRRSKKSGGGGGREG---YKRYVFKVLKQVHPEVGISGQAMLILNNFM 180
           KK E+K E K+ K+R ++ GG   +EG   YKRYVF+VLKQVHP +GIS +AM +LN FM
Sbjct: 121 KKTEQKGEDKKKKKRERRKGGRRRKEGGEEYKRYVFRVLKQVHPGMGISSKAMAVLNGFM 180

Query: 181 NDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGN 239
           NDMF+RLA EAT+LS+YTG MTLSSREIQGAVRLVLPGELGKHAIAEGTKAV+NY+S   
Sbjct: 181 NDMFERLAGEATRLSQYTGKMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVTNYMSNKT 232

[Close]
BLAST of Csa1G136770 vs. NCBI nr
Match: gi|802554801|ref|XP_012065091.1| (PREDICTED: histone H2B.2 [Jatropha curcas])

HSP 1 Score: 196.1 bits (497), Expect = 7.3e-47
Identity = 119/260 (45.77%), Postives = 162/260 (62.31%), Query Frame = 1 

Query: 1   MPPRRS----RRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPD--GGGEMF 60
           M P+RS    ++V+G+V+R+T R+++ETV+V+V+E + Q+ TQE    ET +     E F
Sbjct: 1   MAPKRSGKKKKKVIGTVLRSTRRIIKETVEVSVIEGDPQESTQEYQSQETEEIAANKEPF 60

Query: 61  RRTVPVEE------IKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKG 120
            RT+PVEE       K + ++ I     ED  LR   D + + +       E E    K 
Sbjct: 61  IRTIPVEEGVHERDDKENEEEAIEIS-EEDISLRDQEDFSKKGSASKENLQEQEDLSTKD 120

Query: 121 KKGRRR--------RKKKKEKKREIKEGKRRSKKSGGGGGRE--GYKRYVFKVLKQVHPE 180
             G           +K++KEK ++ K  +R+ K+ G G GRE  GYKRYVFKVLKQVHPE
Sbjct: 121 TTGEENVQEQERPIKKEEKEKTQQEKGQERKKKRKGRGVGREREGYKRYVFKVLKQVHPE 180

Query: 181 VGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAI 239
           + IS  AM I+NN M DMF+R+  EA KLS Y    TLSSREIQ AV+LVLPGELG+HAI
Sbjct: 181 LKISSMAMSIINNLMKDMFERIVYEAAKLSDYIHRTTLSSREIQDAVKLVLPGELGRHAI 240

The following BLAST results are available for this feature:
BLAST of Csa1G136770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2B2_ARATH7.6e-3638.13Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1[more]
H2B3_VOLCA4.3e-3148.63Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B6_ORYSJ5.6e-3152.55Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1[more]
H2B4_CHLRE1.3e-3047.22Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3[more]
H2B2_CHLRE1.6e-3047.22Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3[more]
BLAST of Csa1G136770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSH9_CUCSA7.4e-131100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1[more]
A0A067L694_JATCU5.1e-4745.77Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05414 PE=3 SV=1[more]
A0A072VBE2_MEDTR1.5e-4346.81Core histone H2A/H2B/H3/H4 OS=Medicago truncatula GN=MTR_2g084480 PE=3 SV=1[more]
A0A0S3SC84_PHAAN1.7e-4248.28Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G174200 PE=... [more]
A0A0L9V6L0_PHAAN1.7e-4248.28Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g145000 PE=3 SV=1[more]
BLAST of Csa1G136770 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08170.14.3e-3738.13 Histone superfamily protein[more]
AT3G53650.11.6e-3151.15 Histone superfamily protein[more]
AT5G59910.12.1e-3149.29 Histone superfamily protein[more]
AT5G22880.13.5e-3152.63 histone B2[more]
AT3G46030.13.5e-3150.00 Histone superfamily protein[more]
BLAST of Csa1G136770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209774|gb|KGN64870.1|1.1e-130100.00hypothetical protein Csa_1G136770 [Cucumis sativus][more]
gi|659071869|ref|XP_008462313.1|1.8e-11490.91PREDICTED: histone H2B type 1-A-like [Cucumis melo][more]
gi|778664983|ref|XP_011648456.1|1.4e-11189.63PREDICTED: histone H2B [Cucumis sativus][more]
gi|720036366|ref|XP_010267330.1|4.3e-4749.39PREDICTED: late histone H2B.2.2-like [Nelumbo nucifera][more]
gi|802554801|ref|XP_012065091.1|7.3e-4745.77PREDICTED: histone H2B.2 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G136770.1Csa1G136770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 185..202
score: 4.2E-34coord: 144..162
score: 4.2E-34coord: 163..183
score: 4.2E-34coord: 202..215
score: 4.2E-34coord: 215..228
score: 4.2
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 142..228
score: 4.1E-68coord: 108..116
score: 4.1
IPR000558Histone H2BSMARTSM00427h2b3coord: 129..230
score: 7.6
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 84..207
score: 2.2
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 111..230
score: 1.3
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 115..230
score: 2.72