Cucsa.200320 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.200320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Histone H2B
Location	scaffold01365 : 770677 .. 772143 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGTTAGAGACTTAAGAGTATTGATATAATTTAACATGGTATTATTATAATTAAATCAATTTTTGACAATGAATTTGTTAAGTGACATCAATTTGAACTCTTTTAACTTTCGGCCCACTAATTTTCTAACAAACAACAATTTTTCACTCATTGATGCATGTAGTTTCATATTGTATATGTTTTATAATTAATTGAACACATAAAGGTGTAGCAAACATACCATCATGTCCAAATATATAGAACGACGAATTTGCAGATATAATTGTGTTTGAGTTGAATGAATAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAAACTCTCCAAATATACAGGTACATACATACATACATATATATATATATATATATATATATATATATATATAATTATATACATATATTTATTATTATTTATTATATATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATTCAAATTATTATACAATCATTTTTATTATTATTTTATTAATATTATAATAAATTAATTGATAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAAACTCTCCAaatatacagGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAAACTCTCCAAATATACAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Protein sequence

MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQIYREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP*

Homology

[Close]

BLAST of Cucsa.200320 vs. Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 62/135 (45.93%), Postives = 87/135 (64.44%), Query Frame = 1


Query: 41  PDMAETPDGGGE-MFRRTVPVEEI-------KAHPQQPISHPGYKRYVFKVLKQVHPEVG 100
           P   ETP    E   ++T  VE+        K   +  ++   Y+RYV+KV+KQVHP++G
Sbjct: 108 PQPPETPASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDLG 167

Query: 101 ISGQAMLILNNFMNDMFQRLAEEATKTLQIY--------REIQGAVRLVLPGELGKHAIA 160
           I+ +AM ++N FM DMF+R+A+EA + L  Y        REI+ AVRLVLPGEL +HA+A
Sbjct: 168 ITSKAMTVVNMFMGDMFERIAQEAAR-LSDYTKRRTLSSREIEAAVRLVLPGELSRHAVA 227

[Close]

BLAST of Cucsa.200320 vs. Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-22
Identity = 58/130 (44.62%), Postives = 84/130 (64.62%), Query Frame = 1


Query: 33  ESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPGYKRYVFKVLKQVHPEVG 92
           E + + ++    + P  G ++ +  V     K   +   S   YK Y+FKVLKQVHP++G
Sbjct: 21  EEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIG 80

Query: 93  ISGQAMLILNNFMNDMFQRLAEEATKTLQ-------IYREIQGAVRLVLPGELGKHAIAE 152
           IS +AM I+N+F+ND+F++LA+EA+K  +         REIQ AVRLVLPGEL KHA++E
Sbjct: 81  ISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSE 140

Query: 153 GTKAVSNYVS 156
           GTKAV+ + S
Sbjct: 141 GTKAVTKFTS 150

[Close]

BLAST of Cucsa.200320 vs. Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-22
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 1


Query: 76  YKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQ-------IYREIQG 135
           YK Y+FKVLKQVHP+VGISG+AM I+N+F+ND+F++LA+E++K  +         REIQ 
Sbjct: 52  YKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 111

Query: 136 AVRLVLPGELGKHAIAEGTKAVSNYVS 156
           AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 112 AVRLVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cucsa.200320 vs. Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-22
Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = 1


Query: 39  QEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPGYKRYVFKVLKQVHPEVGISGQAM 98
           +E    +TP  G ++ + +      K   +   S   YK Y+FKVLKQVHP++GIS ++M
Sbjct: 16  EEKKAEKTPKAGKKLPKESGSSGADKKKKKSKKSIETYKIYIFKVLKQVHPDIGISSKSM 75

Query: 99  LILNNFMNDMFQRLAEEATKTLQI-------YREIQGAVRLVLPGELGKHAIAEGTKAVS 156
            I+N+F+ND+F++LA+E+++  +I        REIQ AVRLVLPGEL KHA++EGTKAV+
Sbjct: 76  GIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 135

[Close]

BLAST of Cucsa.200320 vs. Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-22
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 31  EKESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPGYKRYVFKVLKQVHPE 90
           EK+  +   + D   T +GG E  ++T    E             YK Y+FKVLKQVHP+
Sbjct: 6   EKKPSEKAPKADKKITKEGGSERKKKTKKSTET------------YKIYLFKVLKQVHPD 65

Query: 91  VGISGQAMLILNNFMNDMFQRLAEEATKTLQ-------IYREIQGAVRLVLPGELGKHAI 150
           +GISG+AM I+N+F+ND F+++A E+++  +         REIQ AVRLVLPGEL KHA+
Sbjct: 66  IGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 125

Query: 151 AEGTKAVSNYVS 156
           +EGTKAV+ + S
Sbjct: 126 SEGTKAVTKFTS 125

[Close]

BLAST of Cucsa.200320 vs. TrEMBL
Match: A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.7e-38
Identity = 87/99 (87.88%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 75  GYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQI-------YREIQ 134
           GYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATK  +         REIQ
Sbjct: 143 GYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQ 202

Query: 135 GAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP 167
           GAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP
Sbjct: 203 GAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP 241

[Close]

BLAST of Cucsa.200320 vs. TrEMBL
Match: A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
          MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61 EEIKAHPQQPISHP 75
          EEIKAHPQQPISHP
Sbjct: 61 EEIKAHPQQPISHP 74

HSP 2 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 85/195 (43.59%), Postives = 123/195 (63.08%), Query Frame = 1


Query: 1   MPPRRS--RRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEM----- 60
           M P++S  ++ VG+VV+TTT+V++ETVQV+V++ + +   + P      +G  ++     
Sbjct: 1   MAPKKSPKKKAVGAVVKTTTKVIQETVQVSVIQTKPKPQQETPQTENNKNGPKDIEIQDV 60

Query: 61  ---------FRRTVPVEEIK----------AHPQQPISHPGYKRYVFKVLKQVHPEVGIS 120
                      +T+P ++            A  ++  S  GYKRYV+KVLKQVHP++GIS
Sbjct: 61  TTPTPTPKKATKTIPTQDTAKKTKKDSAQGATKKRKRSVEGYKRYVYKVLKQVHPDIGIS 120

Query: 121 GQAMLILNNFMNDMFQRLAEEA------TKTLQI-YREIQGAVRLVLPGELGKHAIAEGT 163
            +AM I+NN M DMF+RLA+EA      TK + +  REIQGAV+LVLPGELGKHA+AEG 
Sbjct: 121 SKAMTIVNNLMTDMFERLADEAARLTKYTKKMTLSSREIQGAVKLVLPGELGKHAVAEGA 180

[Close]

BLAST of Cucsa.200320 vs. TrEMBL
Match: A0A0D2SV40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G103900 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 87/220 (39.55%), Postives = 117/220 (53.18%), Query Frame = 1


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQD-----------------------L 60
           M P+R  +VV   VR+T ++V+ETVQVAV++K   D                       +
Sbjct: 1   MAPKRRAKVV---VRSTKKIVKETVQVAVIDKTEGDNNGDQQQLDTVPLEDIEEAGERVI 60

Query: 61  TQEPDMAETPD----------GGGEMFR-----RTVPVEEI-------------KAHPQQ 120
           T+ P    T D            G+  R     +T PV E              +   ++
Sbjct: 61  TEIPIQGSTEDKAEKEPRKVEAPGQKNRVQGEEKTEPVHEEEEPRKEEKKGKRKRGKKKE 120

Query: 121 PISHPGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQI------- 163
            + H GYK YVF+VLKQVHP + IS +AM ++N+ MNDMF+++  EATK  Q        
Sbjct: 121 LVGHEGYKTYVFRVLKQVHPGMAISSKAMSVINSLMNDMFEKITNEATKLSQYTDRKTLS 180

[Close]

BLAST of Cucsa.200320 vs. TrEMBL
Match: A0A124SBI2_CYNCS (Histone core OS=Cynara cardunculus var. scolymus GN=Ccrd_007259 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 87/229 (37.99%), Postives = 118/229 (51.53%), Query Frame = 1


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEK---------------------------- 60
           M P++S     +VV+TT + ++E+VQV+VV++                            
Sbjct: 1   MAPKKS-----TVVKTTKKTIQESVQVSVVDQTTKKPVTRGGGATVSSKEKIEVFTVKTP 60

Query: 61  -----------ESQDLTQEPDM----------------AETP----DGGGEMFRRTVPVE 120
                      E  D TQ+ D+                A TP    DGGG   R+    +
Sbjct: 61  QQEEEEEEETLEDDDDTQQEDIVNDGIGRERREIKVQDASTPGTTRDGGGGRRRKAASGD 120

Query: 121 EIKAHPQQPI------SHPGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEE 158
            +K   ++           GYKRYV++V+KQVHP++GIS +AM I+NN M DMF+RLAEE
Sbjct: 121 PVKKKKKRRKVGEIGGGGEGYKRYVYRVMKQVHPDLGISSKAMTIINNLMTDMFERLAEE 180

[Close]

BLAST of Cucsa.200320 vs. TrEMBL
Match: A0A0B2QLK8_GLYSO (Histone H2B.2 OS=Glycine soja GN=glysoja_006568 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.8e-26
Identity = 71/134 (52.99%), Postives = 92/134 (68.66%), Query Frame = 1


Query: 31  EKESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPGYKRYVFKVLKQVHPE 90
           E+E +++ ++ + A+TP G           E+ +   +   S  GY+RYV++VLKQVHPE
Sbjct: 98  EEEHEEVKEKKNKAKTPKGKNGK-------EKKRGRKKGRRSVEGYQRYVYRVLKQVHPE 157

Query: 91  VGISGQAMLILNNFMNDMFQRLAEEATKTLQIY--------REIQGAVRLVLPGELGKHA 150
           +GIS + M +LNN MNDMF+RLA EA+K L+ Y        REIQGAVRLVLPGELGKHA
Sbjct: 158 MGISSKCMTVLNNLMNDMFERLAFEASK-LKDYTGHMTLSSREIQGAVRLVLPGELGKHA 217

Query: 151 IAEGTKAVSNYVSY 157
           IAEG KAV+NY SY
Sbjct: 218 IAEGVKAVNNYTSY 223

[Close]

BLAST of Cucsa.200320 vs. TAIR10
Match: AT1G08170.1 (AT1G08170.1 Histone superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-24
Identity = 62/135 (45.93%), Postives = 87/135 (64.44%), Query Frame = 1


Query: 41  PDMAETPDGGGE-MFRRTVPVEEI-------KAHPQQPISHPGYKRYVFKVLKQVHPEVG 100
           P   ETP    E   ++T  VE+        K   +  ++   Y+RYV+KV+KQVHP++G
Sbjct: 108 PQPPETPASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDLG 167

Query: 101 ISGQAMLILNNFMNDMFQRLAEEATKTLQIY--------REIQGAVRLVLPGELGKHAIA 160
           I+ +AM ++N FM DMF+R+A+EA + L  Y        REI+ AVRLVLPGEL +HA+A
Sbjct: 168 ITSKAMTVVNMFMGDMFERIAQEAAR-LSDYTKRRTLSSREIEAAVRLVLPGELSRHAVA 227

[Close]

BLAST of Cucsa.200320 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 58/130 (44.62%), Postives = 84/130 (64.62%), Query Frame = 1


Query: 33  ESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPGYKRYVFKVLKQVHPEVG 92
           E + + ++    + P  G ++ +  V     K   +   S   YK Y+FKVLKQVHP++G
Sbjct: 21  EEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIG 80

Query: 93  ISGQAMLILNNFMNDMFQRLAEEATKTLQ-------IYREIQGAVRLVLPGELGKHAIAE 152
           IS +AM I+N+F+ND+F++LA+EA+K  +         REIQ AVRLVLPGEL KHA++E
Sbjct: 81  ISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSE 140

Query: 153 GTKAVSNYVS 156
           GTKAV+ + S
Sbjct: 141 GTKAVTKFTS 150

[Close]

BLAST of Cucsa.200320 vs. TAIR10
Match: AT2G37470.1 (AT2G37470.1 Histone superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-23
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 1


Query: 76  YKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQ-------IYREIQG 135
           YK Y+FKVLKQVHP+VGISG+AM I+N+F+ND+F++LA+E++K  +         REIQ 
Sbjct: 52  YKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 111

Query: 136 AVRLVLPGELGKHAIAEGTKAVSNYVS 156
           AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 112 AVRLVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cucsa.200320 vs. TAIR10
Match: AT5G02570.1 (AT5G02570.1 Histone superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 61  EEIKAHPQQPISHPGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTL 120
           E +K   +   S   YK Y+FKVLKQVHP++GISG+AM I+N+F+ND+F++LA+E+++  
Sbjct: 30  EIVKKKKKTKKSTETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLA 89

Query: 121 Q-------IYREIQGAVRLVLPGELGKHAIAEGTKAVSNYVS 156
           +         REIQ AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 90  RYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 131

[Close]

BLAST of Cucsa.200320 vs. TAIR10
Match: AT3G09480.1 (AT3G09480.1 Histone superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 31  EKESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPGYKRYVFKVLKQVHPE 90
           EK+  +   + D   T +GG E  ++T    E             YK Y+FKVLKQVHP+
Sbjct: 6   EKKPSEKAPKADKKITKEGGSERKKKTKKSTET------------YKIYLFKVLKQVHPD 65

Query: 91  VGISGQAMLILNNFMNDMFQRLAEEATKTLQ-------IYREIQGAVRLVLPGELGKHAI 150
           +GISG+AM I+N+F+ND F+++A E+++  +         REIQ AVRLVLPGEL KHA+
Sbjct: 66  IGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 125

Query: 151 AEGTKAVSNYVS 156
           +EGTKAV+ + S
Sbjct: 126 SEGTKAVTKFTS 125

[Close]

BLAST of Cucsa.200320 vs. NCBI nr
Match: gi|778664983|ref|XP_011648456.1| (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 6.0e-48
Identity = 125/216 (57.87%), Postives = 135/216 (62.50%), Query Frame = 1


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVE----------------------------- 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVE                             
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  KESQDLTQEP---------DMAETPDGGGEMFRRTVPVEEIKAHPQQPIS-----HPGYK 120
           +E +   Q+P         ++    D   ++   T   E  +   +   S       GYK
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAKREIKEGKRRSKKSGGGGGREGYK 120

Query: 121 RYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQI-------YREIQGAV 167
           RYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATK  +         REIQGAV
Sbjct: 121 RYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAV 180

[Close]

BLAST of Cucsa.200320 vs. NCBI nr
Match: gi|700209774|gb|KGN64870.1| (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 9.5e-38
Identity = 87/99 (87.88%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 75  GYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQI-------YREIQ 134
           GYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATK  +         REIQ
Sbjct: 143 GYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQ 202

Query: 135 GAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP 167
           GAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP
Sbjct: 203 GAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP 241

[Close]

BLAST of Cucsa.200320 vs. NCBI nr
Match: gi|700209774|gb|KGN64870.1| (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
          MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61 EEIKAHPQQPISHP 75
          EEIKAHPQQPISHP
Sbjct: 61 EEIKAHPQQPISHP 74

HSP 2 Score: 163.3 bits (412), Expect = 3.6e-37
Identity = 99/169 (58.58%), Postives = 110/169 (65.09%), Query Frame = 1


Query: 18  TRVVEETVQVAVVEKESQDLTQEPDMAETPD---------GGGEMFRRTVPVEEIKAHPQ 77
           T  V E  +V      +  LT+  D A TP+          GG   ++     EIK   +
Sbjct: 74  THPVSENFEVRRATDSTSQLTE--DTAVTPEMEPEVQKGKKGGRRKKKKEKKREIKEGKR 133

Query: 78  QPIS-----HPGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKTLQI- 137
           +  +       GYKRYVFKVLKQVHPE+GISGQAMLILNNFMNDMFQRLAEEATK  +  
Sbjct: 134 RSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRLAEEATKLSKYT 193

Query: 138 ------YREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 166
                  REIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKSKL
Sbjct: 194 GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKSKL 240

[Close]

BLAST of Cucsa.200320 vs. NCBI nr
Match: gi|659071869|ref|XP_008462313.1| (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-27
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 1  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
          MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1  MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61 EEIKA--HPQQPISHP 75
          EEIK+   P+QPI+HP
Sbjct: 61 EEIKSPDPPEQPITHP 76

HSP 2 Score: 147.5 bits (371), Expect = 2.1e-32
Identity = 85/195 (43.59%), Postives = 123/195 (63.08%), Query Frame = 1


Query: 1   MPPRRS--RRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEM----- 60
           M P++S  ++ VG+VV+TTT+V++ETVQV+V++ + +   + P      +G  ++     
Sbjct: 1   MAPKKSPKKKAVGAVVKTTTKVIQETVQVSVIQTKPKPQQETPQTENNKNGPKDIEIQDV 60

Query: 61  ---------FRRTVPVEEIK----------AHPQQPISHPGYKRYVFKVLKQVHPEVGIS 120
                      +T+P ++            A  ++  S  GYKRYV+KVLKQVHP++GIS
Sbjct: 61  TTPTPTPKKATKTIPTQDTAKKTKKDSAQGATKKRKRSVEGYKRYVYKVLKQVHPDIGIS 120

Query: 121 GQAMLILNNFMNDMFQRLAEEA------TKTLQI-YREIQGAVRLVLPGELGKHAIAEGT 163
            +AM I+NN M DMF+RLA+EA      TK + +  REIQGAV+LVLPGELGKHA+AEG 
Sbjct: 121 SKAMTIVNNLMTDMFERLADEAARLTKYTKKMTLSSREIQGAVKLVLPGELGKHAVAEGA 180

[Close]

BLAST of Cucsa.200320 vs. NCBI nr
Match: gi|672115262|ref|XP_008780187.1| (PREDICTED: histone H2B.1, embryonic-like [Phoenix dactylifera])

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-28
Identity = 87/194 (44.85%), Postives = 113/194 (58.25%), Query Frame = 1


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKES---QDLTQEPDMAET----------- 60
           M P+  RRVVG+ V+TT ++VEET+QV+V   E    Q+ ++EP + ET           
Sbjct: 1   MAPKGQRRVVGTFVKTTRKLVEETLQVSVEGGEGSGEQNHSKEPKVVETALEEKKAQESQ 60

Query: 61  ----PDGGGEMFRRTVPVEEIKAHPQQPISHP--------------GYKRYVFKVLKQVH 120
               P+   E ++   P E  +  PQ+                   GYKRYVF+VLKQVH
Sbjct: 61  TSVHPNKRQEEYKEA-PKEGAEEPPQRDEKQGKEGYGGGGVDGVGGGYKRYVFRVLKQVH 120

Query: 121 PEVGISGQAMLILNNFMNDMFQRLAEEAT-------KTLQIYREIQGAVRLVLPGELGKH 156
           P +G+S +AM +L+  M DMF+RLA+EA        K     REIQ AVRLVLPGELGKH
Sbjct: 121 PGMGVSSRAMAVLDGMMADMFERLADEAARLSRYSGKATLSSREIQDAVRLVLPGELGKH 180

The following BLAST results are available for this feature:

BLAST of Cucsa.200320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B2_ARATH	5.1e-23	45.93	Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1	[more]
H2B3_ARATH	1.9e-22	44.62	Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3	[more]
H2B4_ARATH	3.3e-22	60.92	Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3	[more]
H2B2_SOLLC	5.6e-22	45.16	Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2	[more]
H2B5_ARATH	5.6e-22	44.70	Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3	[more]

BLAST of Cucsa.200320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSH9_CUCSA	6.7e-38	87.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1	[more]
A0A0A0LSH9_CUCSA	2.2e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1	[more]
A0A0D2SV40_GOSRA	1.1e-27	39.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G103900 PE=3 SV=1	[more]
A0A124SBI2_CYNCS	2.6e-26	37.99	Histone core OS=Cynara cardunculus var. scolymus GN=Ccrd_007259 PE=3 SV=1	[more]
A0A0B2QLK8_GLYSO	5.8e-26	52.99	Histone H2B.2 OS=Glycine soja GN=glysoja_006568 PE=3 SV=1	[more]

BLAST of Cucsa.200320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08170.1	2.9e-24	45.93	Histone superfamily protein	[more]
AT2G28720.1	1.1e-23	44.62	Histone superfamily protein	[more]
AT2G37470.1	1.9e-23	60.92	Histone superfamily protein	[more]
AT5G02570.1	3.2e-23	52.94	Histone superfamily protein	[more]
AT3G09480.1	3.2e-23	44.70	Histone superfamily protein	[more]

BLAST of Cucsa.200320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664983\|ref\|XP_011648456.1\|	6.0e-48	57.87	PREDICTED: histone H2B [Cucumis sativus]	[more]
gi\|700209774\|gb\|KGN64870.1\|	9.5e-38	87.88	hypothetical protein Csa_1G136770 [Cucumis sativus]	[more]
gi\|700209774\|gb\|KGN64870.1\|	3.2e-33	100.00	hypothetical protein Csa_1G136770 [Cucumis sativus]	[more]
gi\|659071869\|ref\|XP_008462313.1\|	3.4e-27	88.16	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
gi\|672115262\|ref\|XP_008780187.1\|	2.4e-28	44.85	PREDICTED: histone H2B.1, embryonic-like [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.200320.1	Cucsa.200320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 95..115 score: 1.4E-13coord: 76..94 score: 1.4
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 76..153 score: 2.1
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 66..155 score: 8.6
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 64..118 score: 8.
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 73..155 score: 4.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 66..155 score: 4.19

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.200320	Cla001053	Watermelon (97103) v1	cgywmB394
Cucsa.200320	Csa1G136770	Cucumber (Chinese Long) v2	cgycuB305
Cucsa.200320	MELO3C004846	Melon (DHL92) v3.5.1	cgymeB365
Cucsa.200320	ClCG01G013960	Watermelon (Charleston Gray)	cgywcgB371
Cucsa.200320	CSPI01G14070	Wild cucumber (PI 183967)	cgycpiB318
Cucsa.200320	CmaCh12G008090	Cucurbita maxima (Rimu)	cgycmaB0593
Cucsa.200320	Lsi03G000660	Bottle gourd (USVL1VR-Ls)	cgylsiB343
Cucsa.200320	Cp4.1LG07g06730	Cucurbita pepo (Zucchini)	cgycpeB0566
Cucsa.200320	MELO3C004846.2	Melon (DHL92) v3.6.1	cgymedB361
Cucsa.200320	CsaV3_1G014270	Cucumber (Chinese Long) v3	cgycucB322
Cucsa.200320	Cla97C01G012930	Watermelon (97103) v2	cgywmbB374
Cucsa.200320	Bhi08G000108	Wax gourd	cgywgoB422

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.200320	Cucurbita maxima (Rimu)	cgycmaB0594
Cucsa.200320	Cucurbita moschata (Rifu)	cgycmoB0593
Cucsa.200320	Cucurbita moschata (Rifu)	cgycmoB0594
Cucsa.200320	Watermelon (97103) v1	cgywmB391
Cucsa.200320	Cucurbita pepo (Zucchini)	cgycpeB0565
Cucsa.200320	Silver-seed gourd	carcgyB0205