Cla97C01G012930 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G012930
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	histone H2B.6-like
Location	Cla97Chr01 : 26708187 .. 26709568 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGGTAAGAACATCACTATAAATGACAAAAGGATTATAAATATTTTCTCCACATAGTTAGATGGATAGTTATTTGAAGAATTGAAATTATGAGTAAATTTAGAGTGGATTTGAAATACATTTTCAAGTGTTTAATTAAAAAAAAAAAAAAATCAATTTCAACCACCCCTACAAATAAACTTTGAAGTGAAATGTATTTTAAAGAGTTTAAATAAAAATTAACATTTTGAAGAAAAATCTCCCAAGTCGATCCTAACGGACCTTAGAACAATGGAAAGCAATGAAAATGGTATTTTATGAAAACTTTAGTTGAAAATTTTGATTGAACAGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGGTATCCTTCAATATATCCCATTATCACATAATCTAACCACGAATATAGCAAATTATTTTTATCTATAAATCAATTTTATCATTATTGTCCATCACATTTTGCATTTTCAATATTAACAATCAAATTAAAATTAGCCATTCTCCTACTTTTGTTGCGAGAAGATTTTGAAATCTATTAAATCAAGGGAATGAGAATAATTAAAAAAACTAAAATAAGTATCAACTCTCAGTTAAGTACTAATTGTATTTTAAAATTTTAAAATAATTATTTCAATAGTTATGAAGAATGAGCAGAAATTAATTAAAATTGTTTTGAGGATAATAATAATAGTTGGAATTTGGGAATATTGGTGGGTGATAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

mRNA sequence

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

Coding sequence (CDS)

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

Protein sequence

MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPKLP

Homology

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BLAST of Cla97C01G012930 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 3.7e-68
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT AET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT-AETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV--------GNE 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PEV           
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQXXXXXXXXXX 120

Query: 121 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPK 230
           RLA+EAT+LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  K
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTK 237

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BLAST of Cla97C01G012930 vs. NCBI nr
Match: KGN64870.1 (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 1.5e-66
Identity = 186/243 (76.54%), Postives = 204/243 (83.95%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD  AET  G GGEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD-MAETPDG-GGEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV----------GNE 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED  V P+ +P++             
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXX 120

Query: 121 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHR--RP 232
           RLA+EAT+LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  + 
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240

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BLAST of Cla97C01G012930 vs. NCBI nr
Match: XP_011648456.1 (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 169/233 (72.53%), Postives = 185/233 (79.40%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD  AET  G GGEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD-MAETPDG-GGEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERXXXXXXXXX 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED     K + + G            
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTED---TAKREIKEGK----------- 120

Query: 121 XXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLS 180
            XXXXXXXXXXXX      V+KVLKQVHPE+GISG+AMLILNN MNDMF+RLA+EAT+LS
Sbjct: 121 -XXXXXXXXXXXXEGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLS 180

Query: 181 KYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHR--RPKLP 232
           KYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  + KLP
Sbjct: 181 KYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP 216

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BLAST of Cla97C01G012930 vs. NCBI nr
Match: XP_022937552.1 (histone H2B.6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 4.1e-59
Identity = 165/229 (72.05%), Postives = 183/229 (79.91%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRRIVGSVVRTTT+VVEETV VAVVE ESQD+TQEP T AET GGDG  +F+RT+
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPAT-AET-GGDG--VFRRTI 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV--GNERXXXXXXX 120
           PV       E P T P   D +  R +DSTS+VTED DV  K + +   G    XXXXXX
Sbjct: 61  PV-------EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRESXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
           XXXXXXXXXXXXXX       V+KVLKQVHPE+GISG+AM+ILNNLMNDMFERLA+EAT+
Sbjct: 121 XXXXXXXXXXXXXXREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATK 180

Query: 181 LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRR 228
           LSKYTGG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSYDHRR
Sbjct: 181 LSKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 218

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BLAST of Cla97C01G012930 vs. NCBI nr
Match: XP_023537504.1 (histone H2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 2.6e-58
Identity = 164/231 (71.00%), Postives = 184/231 (79.65%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRRIVGSVVRTTT+VVEETV VAVVE ESQD+TQEP T AET GGDG  +F+R +
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPAT-AET-GGDG--VFRRNI 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGN--ERXXXXXXX 120
           PV       E P T P   D +  R +DSTS+VTED DV  K + +  N     XXXXXX
Sbjct: 61  PV-------EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGIRESXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
           XXXXXXXXXXXXXXX      V++VLKQVHPE+GISG+AM+ILNNLMNDMFERLA+EAT+
Sbjct: 121 XXXXXXXXXXXXXXXEGYKRYVFRVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATK 180

Query: 181 LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPK 230
           LSKYTGG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSYDHRR +
Sbjct: 181 LSKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTR 220

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BLAST of Cla97C01G012930 vs. TrEMBL
Match: tr|A0A1S3CH74|A0A1S3CH74_CUCME (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.4e-68
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT AET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT-AETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV--------GNE 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PEV           
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQXXXXXXXXXX 120

Query: 121 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPK 230
           RLA+EAT+LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  K
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTK 237

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BLAST of Cla97C01G012930 vs. TrEMBL
Match: tr|A0A0A0LSH9|A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.0e-66
Identity = 186/243 (76.54%), Postives = 204/243 (83.95%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD  AET  G GGEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD-MAETPDG-GGEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV----------GNE 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED  V P+ +P++             
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXX 120

Query: 121 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHR--RP 232
           RLA+EAT+LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  + 
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240

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BLAST of Cla97C01G012930 vs. TrEMBL
Match: tr|A0A1R3GJD0|A0A1R3GJD0_COCAP (Histone H2B OS=Corchorus capsularis OX=210143 GN=CCACVL1_25545 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 109/239 (45.61%), Postives = 137/239 (57.32%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQR-- 60
           M P+R  ++   VVRTT +VV+ETVQV+VV+  + D  ++ +T       D     +R  
Sbjct: 1   MAPKRRAKV---VVRTTKKVVQETVQVSVVQPPAGDNGEQLETLKTIPVEDIAHEEERII 60

Query: 61  -TVPVEG-----KTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKT-DPEVGNER 120
             +PVEG     K     Q   +PA +      A  +  +  E   V PK          
Sbjct: 61  TEIPVEGLTKDDKLQTEHQTEQVPAEEQPSDELAPKTKVEDQEPSIVTPKAXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVWKVLKQVHPEMGISGKAMLILNNLMNDMFER 180
           XXXXXXX                     V++VLKQVHP M IS KAM I+N+LMNDMFER
Sbjct: 121 XXXXXXXKEKRKRVKRKGLDGNEAYKTYVFRVLKQVHPGMAISSKAMSIINSLMNDMFER 180

Query: 181 LAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPKL 231
           +A+EAT+LSKY  G TLSSREIQGAVRLVLPGELGKHA+AEG KAV+NY S+  +R KL
Sbjct: 181 IAEEATKLSKYRDGKTLSSREIQGAVRLVLPGELGKHAVAEGNKAVTNYASHSQKRTKL 236

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BLAST of Cla97C01G012930 vs. TrEMBL
Match: tr|I1LRA5|I1LRA5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100786873 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           V++VLKQVHPEMGIS K M +LNNLMNDMFERLA EA++L  YTG MTLSSREIQGAVRL
Sbjct: 140 VYRVLKQVHPEMGISSKCMTVLNNLMNDMFERLAFEASKLKDYTGHMTLSSREIQGAVRL 199

Query: 200 VLPGELGKHAIAEGTKAVSNYVSYD 225
           VLPGELGKHAIAEG KAV+NY SYD
Sbjct: 200 VLPGELGKHAIAEGVKAVNNYTSYD 224

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BLAST of Cla97C01G012930 vs. TrEMBL
Match: tr|A0A1U8AWH0|A0A1U8AWH0_NELNU (late histone H2B.2.2-like OS=Nelumbo nucifera OX=4432 GN=LOC104604599 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.0e-29
Identity = 69/83 (83.13%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           V++VLKQVHP MGIS KAM +LN  MNDMFERLA EAT+LS+YTG MTLSSREIQGAVRL
Sbjct: 142 VFRVLKQVHPGMGISSKAMAVLNGFMNDMFERLAGEATRLSQYTGKMTLSSREIQGAVRL 201

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGELGKHAIAEGTKAV+NY+S
Sbjct: 202 VLPGELGKHAIAEGTKAVTNYMS 224

[Close]

BLAST of Cla97C01G012930 vs. Swiss-Prot
Match: sp|Q9SGE3|H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 59/88 (67.05%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           V+KV+KQVHP++GI+ KAM ++N  M DMFER+AQEA +LS YT   TLSSREI+ AVRL
Sbjct: 155 VYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRL 214

Query: 200 VLPGELGKHAIAEGTKAVSNYVSYDHRR 228
           VLPGEL +HA+AEG+KAVSN+V YD R+
Sbjct: 215 VLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of Cla97C01G012930 vs. Swiss-Prot
Match: sp|Q9ZUS0|H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRL
Sbjct: 56  IFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 115

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 116 VLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cla97C01G012930 vs. Swiss-Prot
Match: sp|Q9LFF6|H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRL
Sbjct: 55  IFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 114

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 115 VLPGELSKHAVSEGTKAVTKFTS 137

[Close]

BLAST of Cla97C01G012930 vs. Swiss-Prot
Match: sp|Q9LZ45|H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRL
Sbjct: 49  IFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 108

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 109 VLPGELAKHAVSEGTKAVTKFTS 131

[Close]

BLAST of Cla97C01G012930 vs. Swiss-Prot
Match: sp|P40283|H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 112.1 bits (279), Expect = 8.4e-24
Identity = 53/83 (63.86%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GIS KAM I+N+ +ND+FE+LAQEA++L++Y    T++SREIQ AVRL
Sbjct: 67  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRL 126

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 127 VLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of Cla97C01G012930 vs. TAIR10
Match: AT1G08170.1 (Histone superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 9.1e-29
Identity = 59/88 (67.05%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           V+KV+KQVHP++GI+ KAM ++N  M DMFER+AQEA +LS YT   TLSSREI+ AVRL
Sbjct: 155 VYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRL 214

Query: 200 VLPGELGKHAIAEGTKAVSNYVSYDHRR 228
           VLPGEL +HA+AEG+KAVSN+V YD R+
Sbjct: 215 VLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of Cla97C01G012930 vs. TAIR10
Match: AT2G37470.1 (Histone superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-25
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRL
Sbjct: 56  IFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 115

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 116 VLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cla97C01G012930 vs. TAIR10
Match: AT3G53650.1 (Histone superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-25
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRL
Sbjct: 55  IFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 114

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 115 VLPGELSKHAVSEGTKAVTKFTS 137

[Close]

BLAST of Cla97C01G012930 vs. TAIR10
Match: AT5G02570.1 (Histone superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-25
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRL
Sbjct: 49  IFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 108

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 109 VLPGELAKHAVSEGTKAVTKFTS 131

[Close]

BLAST of Cla97C01G012930 vs. TAIR10
Match: AT2G28720.1 (Histone superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 4.7e-25
Identity = 53/83 (63.86%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 140 VWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRL 199
           ++KVLKQVHP++GIS KAM I+N+ +ND+FE+LAQEA++L++Y    T++SREIQ AVRL
Sbjct: 68  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRL 127

Query: 200 VLPGELGKHAIAEGTKAVSNYVS 223
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 128 VLPGELAKHAVSEGTKAVTKFTS 150

The following BLAST results are available for this feature:

BLAST of Cla97C01G012930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462313.1	3.7e-68	79.50	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
KGN64870.1	1.5e-66	76.54	hypothetical protein Csa_1G136770 [Cucumis sativus]	[more]
XP_011648456.1	1.1e-64	72.53	PREDICTED: histone H2B [Cucumis sativus]	[more]
XP_022937552.1	4.1e-59	72.05	histone H2B.6-like isoform X1 [Cucurbita moschata]	[more]
XP_023537504.1	2.6e-58	71.00	histone H2B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C01G012930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CH74\|A0A1S3CH74_CUCME	2.4e-68	79.50	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
tr\|A0A0A0LSH9\|A0A0A0LSH9_CUCSA	1.0e-66	76.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1	[more]
tr\|A0A1R3GJD0\|A0A1R3GJD0_COCAP	2.0e-30	45.61	Histone H2B OS=Corchorus capsularis OX=210143 GN=CCACVL1_25545 PE=3 SV=1	[more]
tr\|I1LRA5\|I1LRA5_SOYBN	2.6e-30	82.35	Uncharacterized protein OS=Glycine max OX=3847 GN=100786873 PE=3 SV=1	[more]
tr\|A0A1U8AWH0\|A0A1U8AWH0_NELNU	5.0e-29	83.13	late histone H2B.2.2-like OS=Nelumbo nucifera OX=4432 GN=LOC104604599 PE=3 SV=1	[more]

BLAST of Cla97C01G012930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SGE3\|H2B2_ARATH	1.6e-27	67.05	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
sp\|Q9ZUS0\|H2B4_ARATH	3.8e-24	63.86	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
sp\|Q9LFF6\|H2B8_ARATH	3.8e-24	63.86	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]
sp\|Q9LZ45\|H2B9_ARATH	3.8e-24	63.86	Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3	[more]
sp\|P40283\|H2B11_ARATH	8.4e-24	63.86	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]

BLAST of Cla97C01G012930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08170.1	9.1e-29	67.05	Histone superfamily protein	[more]
AT2G37470.1	2.1e-25	63.86	Histone superfamily protein	[more]
AT3G53650.1	2.1e-25	63.86	Histone superfamily protein	[more]
AT5G02570.1	2.1e-25	63.86	Histone superfamily protein	[more]
AT2G28720.1	4.7e-25	63.86	Histone superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0005694	chromosome
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000788	nuclear nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G012930.1	Cla97C01G012930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 177..194 score: 45.03 coord: 194..207 score: 78.23 coord: 136..154 score: 68.17 coord: 207..220 score: 69.32 coord: 155..175 score: 54.65
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 123..222 e-value: 2.7E-46 score: 169.8
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 79..224
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 105..199 e-value: 1.1E-18 score: 67.8
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 95..223 e-value: 1.2E-48 score: 166.2
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 109..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..132
None	No IPR available	PANTHER	PTHR23428:SF50	HISTONE H2B	coord: 79..224

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G012930	Cla001053	Watermelon (97103) v1	wmwmbB242
Cla97C01G012930	Csa1G136770	Cucumber (Chinese Long) v2	cuwmbB002
Cla97C01G012930	MELO3C004846	Melon (DHL92) v3.5.1	mewmbB134
Cla97C01G012930	ClCG01G013960	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G012930	CSPI01G14070	Wild cucumber (PI 183967)	cpiwmbB002
Cla97C01G012930	Cucsa.200320	Cucumber (Gy14) v1	cgywmbB374
Cla97C01G012930	CmaCh12G008090	Cucurbita maxima (Rimu)	cmawmbB163
Cla97C01G012930	CmoCh12G008190	Cucurbita moschata (Rifu)	cmowmbB149
Cla97C01G012930	Lsi03G000660	Bottle gourd (USVL1VR-Ls)	lsiwmbB216
Cla97C01G012930	CsGy1G014050	Cucumber (Gy14) v2	cgybwmbB003
Cla97C01G012930	MELO3C004846.2	Melon (DHL92) v3.6.1	medwmbB127
Cla97C01G012930	CsaV3_1G014270	Cucumber (Chinese Long) v3	cucwmbB002
Cla97C01G012930	Bhi08G000108	Wax gourd	wgowmbB461

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G012930	Silver-seed gourd	carwmbB0173
Cla97C01G012930	Cucurbita maxima (Rimu)	cmawmbB209
Cla97C01G012930	Cucurbita moschata (Rifu)	cmowmbB193