CsGy1G014050 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G014050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	histone H2B type 1-A-like
Location	Chr1 : 9684043 .. 9685570 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTTTTCACAAACTAAAACCAAATGCAAAGCATCAGGATTAAATGGTTAAGTTTTTCAAACTTAAGGATAGAATGGAAATAACTTCAAAATGTAATTTATTTTAATAGATAAATATCTATTTACCGCATGAACAACCATTTTCTTGTTCACTTTGGTTTTACCTTCCACGTGGCTAAAAATCACAAGCAAGGCGGCAACGTGTCATCCACGTGTCTTCTCCCCCGATTCGTGTAATTTTCTCTTAACAATATAGGTTTTATAATTAAATGAGCATTTAAATTAAAATCACCCGCCTATTCTTTCAAACCGGGCGTACTAAAAACGACGTGTCGTCATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGTTAGAGACTTAAGAGTATTGATATAATTTAACATGGTATTATTATAATTAAATCAATTTTTGACAATGAATTTGTTAAGTGACATCAATTTGAACTCTTTTAACTTTCGGCCCACTAATTTTCTAACAAACAACAATTTTTCACTCATTGATGCATGTAGTTTCATATTGTATATGTTTTATAATTAATTGAACACATAAAGGTGTAGCAAACATACCATCATGTCCAAATATATAGAACGACGAATTTGCAGATATAATTGTGTTTGAGTTGAATGAATAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTACATACATACATACATATATATATATATATATATATATATATATATATTCAAATTATTATACAATCATTTTTATTATTATTTTATTAATATTATAATAAATTAATTGATAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAATTAGTTACCTTTATAATCACTCTTCCTTTTTTTTTTTTTTCTTCTTTGTATATTTTGTAAATGTGGTTT

mRNA sequence

CAAGTTTTCACAAACTAAAACCAAATGCAAAGCATCAGGATTAAATGGTTAAGTTTTTCAAACTTAAGGATAGAATGGAAATAACTTCAAAATGTAATTTATTTTAATAGATAAATATCTATTTACCGCATGAACAACCATTTTCTTGTTCACTTTGGTTTTACCTTCCACGTGGCTAAAAATCACAAGCAAGGCGGCAACGTGTCATCCACGTGTCTTCTCCCCCGATTCGTGTAATTTTCTCTTAACAATATAGGTTTTATAATTAAATGAGCATTTAAATTAAAATCACCCGCCTATTCTTTCAAACCGGGCGTACTAAAAACGACGTGTCGTCATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAATTAGTTACCTTTATAATCACTCTTCCTTTTTTTTTTTTTTCTTCTTTGTATATTTTGTAAATGTGGTTT

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGAAACCCCCGACGGTGGCGGTGAAATGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGATCCGGAAAGGAAAAAAAGGTAGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Protein sequence

MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP

Homology

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BLAST of CsGy1G014050 vs. NCBI nr
Match: KGN64870.1 (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 3.6e-98
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240

Query: 241 P 242
           P
Sbjct: 241 P 241

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BLAST of CsGy1G014050 vs. NCBI nr
Match: XP_011648456.1 (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 204/241 (84.65%), Postives = 204/241 (84.65%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTA     E K                
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAKREIKEGK---------------- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
                    XXXXXXXXXXXX      VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 ---------XXXXXXXXXXXXEGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 216

Query: 241 P 242
           P
Sbjct: 241 P 216

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BLAST of CsGy1G014050 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 224/242 (92.56%), Postives = 233/242 (96.28%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXX 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP+++  XXXXXXXXXX
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQ--XXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 240

[Close]

BLAST of CsGy1G014050 vs. NCBI nr
Match: XP_022937552.1 (histone H2B.6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 243.4 bits (620), Expect = 7.7e-61
Identity = 165/237 (69.62%), Postives = 182/237 (76.79%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRRT+PV
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX 120
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R              
Sbjct: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR--------DGVRES 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           XXXXXXXXXXXXXXXXXXXX       VFKVLKQVHPEVGISGQAM+ILNN MNDMF+RL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 238
           AEEATKLSKYTGG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 AEEATKLSKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 220

[Close]

BLAST of CsGy1G014050 vs. NCBI nr
Match: XP_023537504.1 (histone H2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 5.0e-60
Identity = 164/237 (69.20%), Postives = 182/237 (76.79%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRR +PV
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRNIPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX 120
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R              
Sbjct: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR--------NGIRES 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           XXXXXXXXXXXXXXXXXXXXX      VF+VLKQVHPEVGISGQAM+ILNN MNDMF+RL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXEGYKRYVFRVLKQVHPEVGISGQAMVILNNLMNDMFERL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 238
           AEEATKLSKYTGG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 AEEATKLSKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTR 220

[Close]

BLAST of CsGy1G014050 vs. TAIR10
Match: AT1G08170.1 (Histone superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           V+KV+KQVHP++GI+ +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRL
Sbjct: 155 VYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRL 214

Query: 208 VLPGELGKHAIAEGTKAVSNYVSYGNR 235
           VLPGEL +HA+AEG+KAVSN+V Y +R
Sbjct: 215 VLPGELSRHAVAEGSKAVSNFVGYDSR 241

[Close]

BLAST of CsGy1G014050 vs. TAIR10
Match: AT2G37470.1 (Histone superfamily protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-26
Identity = 54/83 (65.06%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP+VGISG+AM I+N+F+ND+F++LA+E++KL++Y    T++SREIQ AVRL
Sbjct: 56  IFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 115

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 116 VLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of CsGy1G014050 vs. TAIR10
Match: AT2G28720.1 (Histone superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 7.5e-26
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP++GIS +AM I+N+F+ND+F++LA+EA+KL++Y    T++SREIQ AVRL
Sbjct: 68  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRL 127

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 128 VLPGELAKHAVSEGTKAVTKFTS 150

[Close]

BLAST of CsGy1G014050 vs. TAIR10
Match: AT3G53650.1 (Histone superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 7.5e-26
Identity = 52/83 (62.65%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP++GISG+AM I+N+F+ND+F++LA+E+++L++Y    T++SREIQ AVRL
Sbjct: 55  IFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 114

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 115 VLPGELSKHAVSEGTKAVTKFTS 137

[Close]

BLAST of CsGy1G014050 vs. TAIR10
Match: AT5G02570.1 (Histone superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 7.5e-26
Identity = 52/83 (62.65%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP++GISG+AM I+N+F+ND+F++LA+E+++L++Y    T++SREIQ AVRL
Sbjct: 49  IFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 108

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 109 VLPGELAKHAVSEGTKAVTKFTS 131

[Close]

BLAST of CsGy1G014050 vs. Swiss-Prot
Match: sp|Q9SGE3|H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-26
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           V+KV+KQVHP++GI+ +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRL
Sbjct: 155 VYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRL 214

Query: 208 VLPGELGKHAIAEGTKAVSNYVSYGNR 235
           VLPGEL +HA+AEG+KAVSN+V Y +R
Sbjct: 215 VLPGELSRHAVAEGSKAVSNFVGYDSR 241

[Close]

BLAST of CsGy1G014050 vs. Swiss-Prot
Match: sp|Q9ZUS0|H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-25
Identity = 54/83 (65.06%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP+VGISG+AM I+N+F+ND+F++LA+E++KL++Y    T++SREIQ AVRL
Sbjct: 56  IFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 115

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 116 VLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of CsGy1G014050 vs. Swiss-Prot
Match: sp|P40283|H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP++GIS +AM I+N+F+ND+F++LA+EA+KL++Y    T++SREIQ AVRL
Sbjct: 67  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRL 126

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 127 VLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of CsGy1G014050 vs. Swiss-Prot
Match: sp|Q9SI96|H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 53/83 (63.86%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP++GIS +AM I+N+F+ND+F++LA+EA+KL++Y    T++SREIQ AVRL
Sbjct: 68  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRL 127

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 128 VLPGELAKHAVSEGTKAVTKFTS 150

[Close]

BLAST of CsGy1G014050 vs. Swiss-Prot
Match: sp|Q9LFF6|H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 52/83 (62.65%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           +FKVLKQVHP++GISG+AM I+N+F+ND+F++LA+E+++L++Y    T++SREIQ AVRL
Sbjct: 55  IFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 114

Query: 208 VLPGELGKHAIAEGTKAVSNYVS 231
           VLPGEL KHA++EGTKAV+ + S
Sbjct: 115 VLPGELSKHAVSEGTKAVTKFTS 137

[Close]

BLAST of CsGy1G014050 vs. TrEMBL
Match: tr|A0A0A0LSH9|A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.4e-98
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX 120
           EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRL 180

Query: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240
           AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL
Sbjct: 181 AEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKL 240

Query: 241 P 242
           P
Sbjct: 241 P 241

[Close]

BLAST of CsGy1G014050 vs. TrEMBL
Match: tr|A0A1S3CH74|A0A1S3CH74_CUCME (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.1e-87
Identity = 224/242 (92.56%), Postives = 233/242 (96.28%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD AET DGGGEMFRR VPV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  EEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRXXXXXXXXXXXX 120
           EEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP+++  XXXXXXXXXX
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQ--XXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPE+GISGQAMLILNNFMNDMFQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR TKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTKS 240

[Close]

BLAST of CsGy1G014050 vs. TrEMBL
Match: tr|A0A1R3GJD0|A0A1R3GJD0_COCAP (Histone H2B OS=Corchorus capsularis OX=210143 GN=CCACVL1_25545 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.1e-30
Identity = 118/250 (47.20%), Postives = 149/250 (59.60%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60
           M P+R  +V   VVRTT +VV+ETVQV+VV+  + D     +  ET         +T+PV
Sbjct: 1   MAPKRRAKV---VVRTTKKVVQETVQVSVVQPPAGD---NGEQLET--------LKTIPV 60

Query: 61  EEIKAHPQQPISHPV-----SEDFELRR--------ATDSTSQLTEDTAVTPEMEPKIRX 120
           E+I AH ++ I   +     ++D +L+         A +  S          + EP I  
Sbjct: 61  EDI-AHEEERIITEIPVEGLTKDDKLQTEHQTEQVPAEEQPSDELAPKTKVEDQEPSIVT 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFKVLKQVHPEVGISGQAML 180
              XXXXXXXXXXXXXXXX                     VF+VLKQVHP + IS +AM 
Sbjct: 121 PKAXXXXXXXXXXXXXXXXKEKRKRVKRKGLDGNEAYKTYVFRVLKQVHPGMAISSKAMS 180

Query: 181 ILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSN 238
           I+N+ MNDMF+R+AEEATKLSKY  G TLSSREIQGAVRLVLPGELGKHA+AEG KAV+N
Sbjct: 181 IINSLMNDMFERIAEEATKLSKYRDGKTLSSREIQGAVRLVLPGELGKHAVAEGNKAVTN 235

[Close]

BLAST of CsGy1G014050 vs. TrEMBL
Match: tr|A0A2I0LDQ3|A0A2I0LDQ3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000866 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.2e-29
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           VFKVLKQVHP + ISGQAM +LN +MNDMF+RLA+EA KLS+YTG +TLSSREIQGAVRL
Sbjct: 229 VFKVLKQVHPGMRISGQAMTVLNGYMNDMFERLADEAAKLSRYTGRLTLSSREIQGAVRL 288

Query: 208 VLPGELGKHAIAEGTKAVSNYVSY 232
           VLPGELG+HAIAEG KAVSNY+S+
Sbjct: 289 VLPGELGRHAIAEGAKAVSNYMSH 312

HSP 2 Score: 42.0 bits (97), Expect = 2.3e+00
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 2  PPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGE 53
          P R+ ++VVG VVRTT +VV+ETVQVAVV+ ++ +   +P     PD  GE
Sbjct: 3  PKRKGKKVVG-VVRTTRKVVQETVQVAVVDNDTNNGNTQPSQISLPDFEGE 52

[Close]

BLAST of CsGy1G014050 vs. TrEMBL
Match: tr|A0A218WA44|A0A218WA44_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025129 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.2e-29
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 148 VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRL 207
           VFKVLKQVHP + ISGQAM +LN +MNDMF+RLA+EA KLS+YTG +TLSSREIQGAVRL
Sbjct: 229 VFKVLKQVHPGMRISGQAMTVLNGYMNDMFERLADEAAKLSRYTGRLTLSSREIQGAVRL 288

Query: 208 VLPGELGKHAIAEGTKAVSNYVSY 232
           VLPGELG+HAIAEG KAVSNY+S+
Sbjct: 289 VLPGELGRHAIAEGAKAVSNYMSH 312

HSP 2 Score: 42.4 bits (98), Expect = 1.7e+00
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2  PPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGE 53
          P R+ ++VVG VVRTT +VV+ETVQVAVV+ ++ +   +P+    PD  GE
Sbjct: 3  PKRKGKKVVG-VVRTTRKVVQETVQVAVVDNDTNNGNTQPNQISLPDFEGE 52

The following BLAST results are available for this feature:

BLAST of CsGy1G014050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64870.1	3.6e-98	100.00	hypothetical protein Csa_1G136770 [Cucumis sativus]	[more]
XP_011648456.1	1.2e-90	84.65	PREDICTED: histone H2B [Cucumis sativus]	[more]
XP_008462313.1	1.7e-87	92.56	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
XP_022937552.1	7.7e-61	69.62	histone H2B.6-like isoform X1 [Cucurbita moschata]	[more]
XP_023537504.1	5.0e-60	69.20	histone H2B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G014050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08170.1	1.4e-27	64.37	Histone superfamily protein	[more]
AT2G37470.1	2.6e-26	65.06	Histone superfamily protein	[more]
AT2G28720.1	7.5e-26	63.86	Histone superfamily protein	[more]
AT3G53650.1	7.5e-26	62.65	Histone superfamily protein	[more]
AT5G02570.1	7.5e-26	62.65	Histone superfamily protein	[more]

BLAST of CsGy1G014050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SGE3\|H2B2_ARATH	2.5e-26	64.37	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
sp\|Q9ZUS0\|H2B4_ARATH	4.7e-25	65.06	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
sp\|P40283\|H2B11_ARATH	1.4e-24	63.86	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
sp\|Q9SI96\|H2B3_ARATH	1.4e-24	63.86	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]
sp\|Q9LFF6\|H2B8_ARATH	1.4e-24	62.65	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]

BLAST of CsGy1G014050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSH9\|A0A0A0LSH9_CUCSA	2.4e-98	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1	[more]
tr\|A0A1S3CH74\|A0A1S3CH74_CUCME	1.1e-87	92.56	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
tr\|A0A1R3GJD0\|A0A1R3GJD0_COCAP	6.1e-30	47.20	Histone H2B OS=Corchorus capsularis OX=210143 GN=CCACVL1_25545 PE=3 SV=1	[more]
tr\|A0A2I0LDQ3\|A0A2I0LDQ3_PUNGR	5.2e-29	79.76	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000866 PE=3 SV=1	[more]
tr\|A0A218WA44\|A0A218WA44_PUNGR	5.2e-29	79.76	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025129 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G014050.1	CsGy1G014050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 185..202 score: 46.4 coord: 144..162 score: 69.17 coord: 163..183 score: 50.75 coord: 202..215 score: 78.23 coord: 215..228 score: 69.32
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 129..230 e-value: 7.6E-46 score: 168.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 76..231
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 84..207 e-value: 6.1E-18 score: 65.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 96..231 e-value: 1.4E-48 score: 166.0
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 115..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..141
None	No IPR available	PANTHER	PTHR23428:SF50	HISTONE H2B	coord: 76..231

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G014050	Cla001053	Watermelon (97103) v1	cgybwmB047
CsGy1G014050	Csa1G136770	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G014050	MELO3C004846	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G014050	ClCG01G013960	Watermelon (Charleston Gray)	cgybwcgB014
CsGy1G014050	CSPI01G14070	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G014050	CmaCh12G008090	Cucurbita maxima (Rimu)	cgybcmaB058
CsGy1G014050	CmoCh12G008190	Cucurbita moschata (Rifu)	cgybcmoB054
CsGy1G014050	Lsi03G000660	Bottle gourd (USVL1VR-Ls)	cgyblsiB041
CsGy1G014050	Cp4.1LG07g06810	Cucurbita pepo (Zucchini)	cgybcpeB142
CsGy1G014050	MELO3C004846.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G014050	CsaV3_1G014270	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G014050	Cla97C01G012930	Watermelon (97103) v2	cgybwmbB003
CsGy1G014050	Bhi08G000108	Wax gourd	cgybwgoB046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G014050	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G014050	Cucurbita maxima (Rimu)	cgybcmaB123
CsGy1G014050	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G014050	Cucurbita moschata (Rifu)	cgybcmoB113
CsGy1G014050	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G014050	Watermelon (Charleston Gray)	cgybwcgB027
CsGy1G014050	Watermelon (97103) v1	cgybwmB067
CsGy1G014050	Silver-seed gourd	carcgybB0180
CsGy1G014050	Watermelon (97103) v2	cgybwmbB026